Documentation/4.0/Modules/DicomToNrrdConverter - Revision history

UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

2013-06-14T07:28:38Z

Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

JChris.FillionR at 11:25, 2 February 2012

2012-02-02T11:25:01Z

Kikinis at 12:49, 22 November 2011

2011-11-22T12:49:31Z

Kedar p at 21:50, 21 November 2011

2011-11-21T21:50:27Z

Kedar p at 21:04, 21 November 2011

2011-11-21T21:04:19Z

Kedar p at 20:59, 21 November 2011

2011-11-21T20:59:37Z

Kedar p at 20:57, 21 November 2011

2011-11-21T20:57:27Z

Marianna at 20:19, 11 November 2011

2011-11-11T20:19:48Z

Marianna: Created page with ' {{documentation/{{documentation/version}}/module-header}} {{doc…'

2011-11-03T19:18:57Z

Created page with ' {{documentation/{{documentation/version}}/module-header}}   {{doc…'

New page

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}} }}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
Author: Xiaodong Tao, GE<br>
Contributor1: Vince Magnotta<br>
Contributor2:Hans Johnson
Contact: Xiaodong Tao, <email>taox@research.ge.com </email>
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:Logo-namicnew2.jpg|NA-MIC
|Image:GE-logo.png|GE
}}
{{documentation/{{documentation/version}}/module-introduction-end}}

{{documentation/{{documentation/version}}/module-section|Module Description}}
{{documentation/{{documentation/version}}/module-description|xmlurl={{documentation/{{documentation/version}}/module-cli-xmlurl|{{documentation/modulename}}|15308}} }}

{{documentation/{{documentation/version}}/module-section|Use Cases}}
Most frequently used for these scenarios:

{{documentation/{{documentation/version}}/module-section|Tutorials}}
Links to tutorials that use this module

{{documentation/{{documentation/version}}/module-section|Panels}}
{{documentation/{{documentation/version}}/module-parametersdescription|xmlurl={{documentation/{{documentation/version}}/module-cli-xmlurl|{{documentation/modulename}}|15308}} }}
{|
|[[Image:DWIDicomToNrrdGUI.png|thumb|280px|Screenshot of the UI]]
|}

{{documentation/{{documentation/version}}/module-section|Similar Modules}}
* Point to other modules that have similar functionality


{{documentation/{{documentation/version}}/module-section|References}}
Publications related to this module go here. Links to pdfs would be useful.
For extensions: link to the source code repository and additional documentation


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo|{{documentation/modulename}}|type=CLI|category=
{{documentation/{{documentation/version}}/module-category|xmlurl=
{{documentation/{{documentation/version}}/module-cli-xmlurl|{{documentation/modulename}}|15308}}
}}
}}


{{documentation/{{documentation/version}}/module-footer|category=
{{documentation/{{documentation/version}}/module-category|xmlurl=
{{documentation/{{documentation/version}}/module-cli-xmlurl|{{documentation/modulename}}|15308}}
}}
}}

← Older revision		Revision as of 07:28, 14 June 2013
Line 1:		Line 1:
		+	<noinclude>{{documentation/versioncheck}}</noinclude>
	<!-- ---------------------------- -->		<!-- ---------------------------- -->
	{{documentation/{{documentation/version}}/module-header}}		{{documentation/{{documentation/version}}/module-header}}

@@ Line 22: / Line 22: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Use Cases}}
-This module is typically used as the first step in diffusion weighted image analysis and tractography to convert diffusion weighted images in Dicom format into Nrrd format, which is recognized by Slicer3 as a legitimate diffusion weighted volume.
+This module is typically used as the first step in diffusion weighted image analysis and tractography to convert diffusion weighted images in Dicom format into Nrrd format, which is recognized by Slicer4 as a legitimate diffusion weighted volume.
 In the recent development, it is extended to act as a dicom series to nrrd file converted for non-diffusion-weighted images as well.

@@ Line 46: / Line 46: @@
 **DVMR 20.0M4
 **DVMR 20.1
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels}}

@@ Line 25: / Line 25: @@
 In the recent development, it is extended to act as a dicom series to nrrd file converted for non-diffusion-weighted images as well.
-<!-- ---------------------------- -->
-{{documentation/{{documentation/version}}/module-section|Supported DWI formats}}
+Supported DWI formats:
 *Philips scanner/software version combinations:
@@ Line 47: / Line 47: @@
 **DVMR 20.1
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels}}
@@ Line 56: / Line 53: @@
 |[[Image:DWIDicomToNrrdGUI.png|thumb|280px|Screenshot of the UI]]
 |}
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Similar Modules}}

@@ Line 17: / Line 17: @@
 }}
 {{documentation/{{documentation/version}}/module-introduction-end}}
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Module Description}}
-{{documentation/{{documentation/version}}/module-description|xmlurl={{documentation/{{documentation/version}}/module-cli-xmlurl|{{documentation/modulename}}|15308}} }}
+{{documentation/{{documentation/version}}/module-description}}
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Use Cases}}
@@ Line 46: / Line 48: @@
 **DVMR 20.0M4
 **DVMR 20.1
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Usage}}
@@ Line 56: / Line 59: @@
 '''For Siemens data:''' In event of incorrect metadata for diffusion gradient vector coordinates in the DICOM header public element tags, please set the '''useBMatrixGradientDirections''' flag. When the useBMatrixGradientDirections flag is set, gradient direction coordinates and b values are derived from the '''bMatrix''' DICOM header private element tag for each gradient. In Siemens DWI data, the b matrix elements are the product of the b value and unit gradient direction vector (column vector) multiplied by the transpose of the unit gradient direction vector. Therefore, for a given gradient direction, the unit gradient direction vector coordinates are the first column of the 3x3 unitary matrix from a singular value decomposition of its b matrix, while the b value is the trace of its b matrix.
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Panels}}
 {|
 |[[Image:DWIDicomToNrrdGUI.png|thumb|280px|Screenshot of the UI]]
 |}
@@ Line 65: / Line 69: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Tutorials}}
-Links to tutorials that use this module
+N/A
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Similar Modules}}
-* Point to other modules that have similar functionality
+N/A
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|References}}
-Publications related to this module go here. Links to pdfs would be useful.
+N/A
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Information for Developers}}
-{{documentation/{{documentation/version}}/module-developerinfo|{{documentation/modulename}}|type=CLI|category=
+{{documentation/{{documentation/version}}/module-developerinfo}}
-  {{documentation/{{documentation/version}}/module-category|xmlurl=
 <!-- ---------------------------- -->
-{{documentation/{{documentation/version}}/module-footer|category=
+{{documentation/{{documentation/version}}/module-footer}}
 <!-- ---------------------------- -->

@@ Line 12: / Line 12: @@
 {{documentation/{{documentation/version}}/module-introduction-row}}
 {{documentation/{{documentation/version}}/module-introduction-logo-gallery
 |Image:GE-logo.png|GE
 |Image:Itk-logo.jpg|Itk
 }}
 {{documentation/{{documentation/version}}/module-introduction-end}}

@@ Line 5: / Line 5: @@
 <!-- ---------------------------- -->
 {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
-{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}} }}
+{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
 {{documentation/{{documentation/version}}/module-introduction-row}}
 This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
-Author: Xiaodong Tao, GE<br>
+Author: Jim Miller, GE<br>
-Contributor1: Vince Magnotta<br>
+Contact: Jim Miller <email>millerjv@ge.com</email><br>
 {{documentation/{{documentation/version}}/module-introduction-row}}
 {{documentation/{{documentation/version}}/module-introduction-logo-gallery
-|Image:Logo-namicnew2.jpg|NA-MIC
+|Image:GE-logo.png|GE
-|Image:GE-logo.png|GE
+|Image:Itk-logo.jpg|Itk
 }}
 {{documentation/{{documentation/version}}/module-introduction-end}}