Documentation/4.0/Modules/BRAINSFit - Revision history

UpdateBot: Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

2013-06-14T07:29:26Z

Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887

JChris.FillionR at 10:01, 2 February 2012

2012-02-02T10:01:46Z

Mscully at 21:11, 22 November 2011

2011-11-22T21:11:53Z

Mscully: Removed example panels.

2011-11-21T21:23:49Z

Removed example panels.

Mscully: Added contributors

2011-11-21T21:16:29Z

Added contributors

Mscully: /* Use Cases, Examples */ Changed data source to Midas

2011-11-21T21:09:21Z

Use Cases, Examples: Changed data source to Midas

Mscully: Added use cases from 3.6 documentation.

2011-11-21T20:45:57Z

Added use cases from 3.6 documentation.

Show changes

Mscully: Added parameters description xml line.

2011-11-21T18:10:20Z

Added parameters description xml line.

Mscully: Updated other urls to BRAINSFit.xml so they point to github.

2011-11-21T17:19:03Z

Updated other urls to BRAINSFit.xml so they point to github.

Mscully: Updated module description url to point to BRANSFit.xml in github.

2011-11-21T16:51:51Z

Updated module description url to point to BRANSFit.xml in github.

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 Most frequently used for these scenarios:
 * '''''Use Case 1: Same Subject: Longitudinal'''''

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 This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
 Author: Hans Johnson, UIOWA<br>
-Contributor1: FIRSTNAME LASTNAME, AFFILIATION<br>
+Contributor1: Kent Williams, UIOWA<br>
-Contributor2: FIRSTNAME LASTNAME, AFFILIATION<br>
+Contributor2: Vincent Magnotta, UIOWA<br>
 Contact: Hans Johnson, <email>(hans-johnson@uiowa.edu</email><br>
 {{documentation/{{documentation/version}}/module-introduction-row}}

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 * '''''Use Case 1: Same Subject: Longitudinal'''''
-For this use case we're registering a baseline T1 scan with a follow-up T1 scan on the same subject a year later.  The two images are again available in the Slicer3/Applications/CLI/BRAINSTools/BRAINSCommonLib/TestData directory as testT1.nii.gz and testT1Longitudinal.nii.gz
+For this use case we're registering a baseline T1 scan with a follow-up T1 scan on the same subject a year later.  The two images are again available on [http://midas.kitware.com/item/view/483 Midas] as testT1.nii.gz and testT1Longitudinal.nii.gz
 First we set the fixed and moving volumes as well as the output transform and output volume names.
@@ Line 90: / Line 90: @@
 * '''''Use Case 2: Same Subject: MultiModal'''''
-For this use case we're registering a T1 scan with a T2 scan collected in the same sesson.  The two images are again available in the Slicer3/Applications/CLI/BRAINSTools/BRAINSCommonLib/TestData directory as testT1.nii.gz and testT2.nii.gz
+For this use case we're registering a T1 scan with a T2 scan collected in the same session.  The two images are again available on [http://midas.kitware.com/item/view/483 Midas] as testT1.nii.gz and testT2.nii.gz
 First we set the fixed and moving volumes as well as the output transform and output volume names.
@@ Line 142: / Line 142: @@
 * '''''Use Case 3: Mouse Registration'''''
-Here we'll register brains from two different mice together.  The fixed and moving mouse brains used in this example are available in the Slicer3/Applications/CLI/BRAINSTools/BRAINSCommonLib/TestData directory.
+Here we'll register brains from two different mice together.  The fixed and moving mouse brains used in this example are available on [http://midas.kitware.com/item/view/483 Midas].
 First we set the fixed and moving volumes as well as the output transform and output volume names.

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