View source for CCA:Atlases:Florins 2010 Hierarchy

=body=
==head==
===soft tissue of the head===
*skin of head
*muscles of head
**masticatory muscles
***temporal muscle
***masseter muscle
***lateral pterygoid muscle
***medial pterygoid muscle
**facial muscles
***frontal muscle
***corrugator muscle
***orbicularis occulis muscle
***levator angulis oris muscle
***orbicularis oris muscle
***risorius muscle
***nasalis muscle
***mentalis muscle
***depressor labii inferioris muscle
***depressor angulis oris muscle
***buccinator muscle
***occipitalis muscle
*salivary glands
**parotid glands
**sublingual glands
**submandibular glands
*lips
*nose
**nasal septum
**nostrils
*tongue
*soft palate
*tonsils
*external ear
*middle ear
*internal ear
*eyes
*extraocular muscles

===skull===

*frontal bone
*parietal bone
*temporal bone
**stapes
**incus
**malleus
*sphenoid bone
*ethmoid bone
*occipital bone
*maxilla
*zygomatic bone
*lacrimal bone
*vomer bone
*palatine bone
*mandible

===teeth===
===central nervous system===
====meninges====

*dura mater
*arachnoid
*pia mater

====brain====
*CSF spaces
**ventricles
***right lateral ventricle
***left lateral ventricle
***third ventricle
***cerebral aqueduct
***fourth ventricle
**subarachnoid space

*brain parenchyma
**gray matter of brain
***telencephalon
**** cerebral cortex
*****frontal lobe
******superior frontal gyrus
******middle frontal gyrus
******inferior frontal gyrus
******orbital gyri
******straight gyrus
******precentral gyrus
******paracentral lobule
******frontal pole
*****temporal lobe
******superior temporal gyrus
******middle temporal gyrus
******inferior temporal gyrus
******hippocampus
******parahippocampal gyrus
******temporal part of medial occipitotemporal gyrus
******temporal part of lateral occipitotemporal gyrus
******uncus
******temporal pole
*****parietal lobe
******postcentral gyrus
******superior parietal lobule
******inferior parietal lobule
******precuneus
*****occipital lobe
******superior occipital gyri
******inferior occipital gyri
******gyrus descendens
******lingual gyrus
******occipital part of medial occipitotemporal gyrus
******occipital part of lateral occipitotemporal gyrus
******cuneus
******occipital pole
*****insular lobe
******limen of insula
******long insular gyrus
******short insular gyri
*****limbic lobe
******cingulate gyrus
******paraterminal gyrus
******indusium griseum
******olfactory bulb
******olfactory tract
****subcortical gray matter of telencephalon
*****striatum
******nucleus accumbens
******caudate nucleus
******putamen
*****pallidum
******globus pallidus pars externa
******globus pallidus pars interna
*****septal nuclei
*****amygdaloid complex
*****claustrum
***diencephalon
****thalamus
*****thalamic nuclei
****subthalamus
*****subthalamic nucleus
****hypothalamus
*****hypothalamic nuclei
*****mamillary bodies
*****substantia perforata
******anterior substantia perforata
******posterior substantia perforata
*****pituitary infundibulum
****epithalamus
*****habenula
******habenular nuclei
*****pineal body
****gray matter of mesencephalon
*****red nucleus
*****substantia nigra
******substantia nigra pars compacta
******substantia nigra pars reticularis
*****superior colliculus
*****inferior colliculus
*****occulomotor nerve nucleus (CN III)
*****trochlear nerve nucleus (CN IV)
*****mesencephalic nucleus of the trigeminal nerve (CN V)
*****periaqueductal gray matter
****gray matter of metencephalon
*****gray matter of pons
******principal sensory nucleus of trigeminal nerve (CN V)
******motor nucleus of the trigeminal nerve (CN V)
******abducent nerve nucleus
******facial nerve nucleus
*****cerebellar gray matter
******cerebellar cortex
******subcortical cerebellar gray matter
*******dentate nucleus
*******emboliform nucleus
*******globose nucleus
*******fastigial nucleus
*****gray matter of myelencephalon (medulla oblongata)
******spinal nucleus of the trigeminal nerve (CN V)
******cochlear nuclei (CN VIII)
******vestibular nuclei (CN VIII)
******superior salivatory nucleus
******inferior salivatory nucleus
******nucleus ambiguus
******dorsal nucleus of vagus nerve (CN X)
******solitary tract nucleus
******hipoglossal nerve nucleus
**cerebral white matter
***association white matter tracts
****U-fibers
****superior longitudinal fasciculus
****inferior longitudinal fasciculus
****arcuate fasciculus
****uncinate fasciculus
****cingulum
***projection fibers
****corticospinal tract
****corticomesencephalic tract
****corticopontine tract
****corticobulbar tract
****optic radiation
****radiation of thalamus
****medial lemniscus
****lateral lemniscus
****superior cerebellar peduncles
****middle cerebellar peduncles
****inferior cerebellar peduncles
****optic nerves, optic chiasm, optic tracts
****fornix
****mammillothalamic tract
****mamillotegmental tract
****thalamic fasciculus
*****ansa lenticularis
*****lenticular fasciculus
***commissural fibers
****corpus callosum
****anterior commissure
****posterior commissure
**cerebellar white matter
====spinal cord====
*gray matter of spinal cord
**anterior horn
**posterior horn
**intermediate horn
*white matter of spinal cord
**anterior column
**lateral column
**posterior column
====endocrine system of brain====
*pituitary gland
**adenohypophysis
**neurohypophysis

==neck==

===soft tissue of neck===
====skin of neck====
====muscles of neck====
====pharynx====
====larynx====
*thyroid cartilage
*cricoid cartilage
*epiglottic cartilage
*arytenoid cartilages
*vocal cords
====thyroid gland====
====parathyroid glands====
===skeleton of neck===
*hyoid bone
*cervical spinal column
**cervical vertebrae
***first cervical vertebra
***second cervical vertebra
***third cervical vertebra
***fourth cervical vertebra
***fifth cervical vertebra
***sixth cervical vertebra
***seventh cervical vertebra

==thorax==
===soft tissue of thorax===
====soft tissue of thoracic wall====
=====Skin of thoracic wall=====
=====muscles of thoracic wall=====
====contents of thoracic cavity====
=====trachea=====
=====bronchi=====
*right main bronchus
*left main bronchus
=====right lung=====
*superior lobe of right lung
*middle lobe of right lung
*inferior lobe of right lung
=====left lung=====
*superior lobe of left lung
*inferior lobe of left lung
=====pleura=====
*parietal pleura
*visceral pleura
*pleural cavity
=====heart=====
*right atrium
*left atrium
*atrial septum
*ventricular septum
*right ventricle of heart
**papillary muscles of right ventricle of heart
**chordae tendineae of right ventricle of heart
*left ventricle of heart
**papillary muscles of left ventricle of heart
**chordae tendineae of left ventricle of heart
*mitral valve
*tricuspid valve
*aortic valve
*pulmonary valve
=====pericardium=====
*pericardial cavity
=====esophagus=====
=====thymus=====
=====mediastinum=====
===skeleton of thorax===
*thoracic vertebral column
**thoracic vertebrae
***first thoracic vertebra
***second thoracic vertebra
***third thoracic vertebra
***fourth thoracic vertebra
***fifth thoracic vertebra
***sixth thoracic vertebra
***seventh thoracic vertebra
***eighth thoracic vertebra
***ninth thoracic vertebra
***tenth thoracic vertebra
***eleventh thoracic vertebra
***twelfth thoracic vertebra

*ribs
**right first rib
**right second rib
**right third rib
**right fourth rib
**right fifth rib
**right sixth rib
**right seventh rib
**right eighth rib
**right ninth rib
**right tenth rib
**right eleventh rib
**right twelfth rib

**left first rib
**left second rib
**left third rib
**left fourth rib
**left fifth rib
**left sixth rib
**left seventh rib
**left eighth rib
**left ninth rib
**left tenth rib
**left eleventh rib
**left twelfth rib

*sternum
**manubrium
**body of sternum
**xyphoid process
*clavicles
==abdomen==
===soft tissue of abdomen===
====soft tissue of abdominal wall====
=====skin of abdominal wall=====
=====muscles of abdominal wall=====
====contents of abdominal cavity====
*peritoneum
**parietal peritoneum
**visceral peritoneum
**omentum
**peritoneal cavity
***bursa omentalis
***Douglas' recess
**falciform ligament of liver
**mesentery
**mesocolon
***transverse mesocolon
***sigmoid mesocolon
**broad ligament of uterus
***mesometrium
***mesosalpinx
***mesovarium
*retroperitoneal space
*stomach
**cardia
**fundus of stomach
**body of stomach
**pylorus
*duodenum
**duodenal ampulla
*small bowel
**jejunum
**ileum
*colon
**cecum
***ileocecal valve
***appendix
**ascending colon
**transverse colon
**sigmoid colon
**rectum
**anus
*liver
**capsule of liver
**right lobe of liver
**left lobe of liver
**caudate lobe of liver
**quadrate lobe of liver
**ligamentum teres of liver
*biliary tree
**right hepatic duct
**left hepatic duct
**common hepatic duct
**common bile duct
**cystic duct
**gallbladder
*pancreas
**head of pancreas
**body of pancreas
**tail of pancreas
**pancreatic duct
**islets of Langerhans
*spleen
*right kidney
**parenchyma of right kidney
***cortex of right kidney
***medulla of right kidney
*right renal pelvis
*left kidney
**parenchyma of left kidney
***cortex of left kidney
***medulla of left kidney
*left renal pelvis
*right ureter
*left ureter
*urinary bladder
*uretra
*suprarenal glands
**corticosuprarenal glands
**medullosuprarenal glands
*female internal genitalia
**uterus
***fundus of uterus
***body of uterus
***cervix
***round ligaments
***uterosacral ligaments
***pubocervical ligament
**fallopian tubes
**ovaries
**vagina
*male internal genitalia
**prostate
**seminal vesicles
**deferent ducts

===skeleton of abdomen===

====lumbar spine====
*lumbar vertebrae
**first lumbar vertebra
**second lumbar vertebra
**third lumbar vertebra
**fourth lumbar vertebra
**fifth lumbar vertebra
====sacrum====
====coccis====
====coxal bones====

==female external genitalia==
===vulva===
*vulval vestibule
*hymen
*major labia
*minor labia
*praeputium
*clitoris
**glans of clitoris
**body of clitoris
***corpus cavernosum of clitoris
**prepuce of clitoris
*Bartolin's glands

==male external genitalia==
===penis===
*glans of penis
**meatus
*shaft
**corpus cavernosum of penis
**spongious body
*prepuce of penis
===scrotum===
*skin of scrotum
*dartos layer
*cremaster muscle
*testicles
** epididymis
**spermatic cord

==upper extremity==

===arm and shoulder===
====soft tissue of arm and shoulder====
*skin of arm and shoulder
*muscles and tendons of arm and shoulder
====skeleton of arm and shoulder====
*scapula
*humerus

===forearm===
====soft tissue of forearm====
*skin of forearm
*muscles and tendons of forearm

====skeleton of forearm====
*radius
*ulna

===hand===

====soft tissue of hand====
*skin of hand
*muscles and tendons of hand

====skeleton of hand====
*carpus
**scaphoid
**lunate 
**triquetrum
**pisiform
**trapezium
**trapezoid
**capitate
**hamate
*metacarpus
**metacarpal bones
***right first metacarpal bone
***right second metacarpal bone
***right third metacarpal bone
***right fouth metacarpal bone
***right fifth metacarpal bone
***left first metacarpal bone
***left second metacarpal bone
***left third metacarpal bone
***left fouth metacarpal bone
***left fifth metacarpal bone
*phalanges of hand

==lower extremity==

===hip and thigh===

====soft tissue of hip and thigh====
*skin of hip and thigh
*muscles and tendons of hip and thigh

====skeleton of hip and thigh====
*femur

===leg===

====soft tissue of leg====

*skin of leg
*muscles and tendons of leg

====skeleton of leg ====
*tibia
*peroneus

===foot===

====soft tissue of foot====
*skin of foot
*muscles and tendons of foot

====skeleton of foot====

*tarsus
**talus
**calcaneus
**navicular
**first cuneiform
**second cuneiform
**third cuneiform
**cuboid
*metatarsus
**metatarsals
***right first metatarsal bone
***right second metatarsal bone
***right third metatarsal bone
***right fouth metatarsal bone
***right fifth metatarsal bone
***left first metatarsal bone
***left second metatarsal bone
***left third metatarsal bone
***left fouth metatarsal bone
***left fifth metatarsal bone
*phalanges of foot

==peripheral nervous system==

===cranial nerves===
*right olfactory nerve (CN I)
*right optic nerve (CN II)
*right oculomotor nerve (CN III)
*right trochlear nerve (CN IV)
*right trigeminal nerve (CN V)
*right abducent nerve (CN VI)
*right facial nerve (CN VII)
*right intermediate nerve (CN VII b)
*right vestibulocochlear nerve (CN VIII)
*right glossopharyngeal nerve (CN IX)
*right vagal nerve (CN X)
*right accessory nerve (CN XI)
*right hypoglossal nerve (CN XII)
*left olfactory nerve (CN I)
*left optic nerve (CN II)
*left oculomotor nerve (CN III)
*left trochlear nerve (CN IV)
*left trigeminal nerve (CN V)
*left abducent nerve (CN VI)
*left facial nerve (CN VII)
*left intermediate nerve (CN VII b)
*left vestibulocochlear nerve (CN VIII)
*left glossopharyngeal nerve (CN IX)
*left vagal nerve (CN X)
*left accessory nerve (CN XI)
*left hypoglossal nerve (CN XII)
===spinal nerves===
====nervous plexi and intercostal nerves====
*cervical plexus
**lesser occipital nerve
**greater auricular nerve
**transverse cervical nerve
**supraclavicular nerve
**ansa cervicalis
**phrenic nerve
**segmental nerve branches
***right first cervical nerve
***right second cervical nerve
***right third cervical nerve
***right fourth cervical nerve
***left first cervical nerve
***left second cervical nerve
***left third cervical nerve
***left fourth cervical nerve
*brachial plexus
**dorsal scapular nerve
**suprascapular nerve
**nerve to subclavius
**lateral pectoral nerve
**musculocutaneus nerve
**axillary nerve
**median nerve
**ulnar nerve
**radial nerve
**medial cutaneous nerve of the arm
**medial cutaneous nerve of the forearm
**lower subscapular nerve
**thoracodorsal nerve
**medial pectoral nerve
**upper subscapular nerve
**long thoracic nerve
*intercostal nerves
**right first intercostal nerve
**right second intercostal nerve
**right third intercostal nerve
**right fourth intercostal nerve
**right fifth intercostal nerve
**right sixth intercostal nerve
**right seventh intercostal nerve
**right eighth intercostal nerve
**right ninth intercostal nerve
**right tenth intercostal nerve
**right eleventh intercostal nerve
**left first intercostal nerve
**left second intercostal nerve
**left third intercostal nerve
**left fourth intercostal nerve
**left fifth intercostal nerve
**left sixth intercostal nerve
**left seventh intercostal nerve
**left eighth intercostal nerve
**left ninth intercostal nerve
**left tenth intercostal nerve
**left eleventh intercostal nerve
*lumbosacral plexus
**iliohypogastric nerve
**ilioinguinal nerve
**genitofemoral nerve
**lateral cutaneous femoral nerve
**femoral nerve
**obturator nerve
**accessory obturator nerve
**sciatic nerve
***common fibular nerve
***tibial nerve
**perforating cutaneous nerve
**pudendal nerve
**anococcigeal nerves

==circulatory system==

===systemic arterial system===
*aorta
**right coronary artery
**left coronary artery
**aortic arch
***right brachiocephalic trunc
****right subclavian artery
*****right vertebral artery
******anterior spinal artery
******posterior inferior cerebellar artery
******basilar artery
*******anterior inferior cerebellar artery
*******pontine arteries
*******superior cerebellar artery
*******posterior cerebellar artery
*****internal thoracic artery
*****thyrocervical trunk
*****costocervical trunk
*****dorsal scapular artery
*****axillary artery
******brachial artery
****right common carotid artery
*****right external carotid artery
*****right internal carotid artery
******right opthalmic artery
******right anterior cerebral artery
*******anterior communicating artery
*****right middle cerebral artery
*****right posterior communicating artery
***left common carotid artery
****left external carotid artery
****left internal carotid artery
*****see right internal carotid artery
***left subclavian artery
****see right subclavian artery
**descending thoracic aorta
***bronchial arteries
***esophageal arteries
***posterior intercostal arteries
**abdominal aorta
***inferior phrenic artery
***celiac trunk
***superior mesenteric artery
***middle suprarenal artery
***renal artery
***gonadal artery
***lumbar arteries
***inferior mesenteric artery
***median sacral artery
***right common iliac artery
****right external iliac artery
*****inferior epigastric artery
*****deep circumflex iliac artery
*****femoral artery
****right internal iliac artery
*****right iliolumbar artery
*****right lateral sacral arteries
*****right superior gluteal artery
*****right obturator artery
*****right inferior gluteal artery
*****right umbilical artery
*****right uterine/deferential artery
*****right inferior vesical artery
*****right middle rectal artery
*****right internal pudendal artery
***left common iliac artery
****left external iliac artery
****left internal iliac artery
==systemic venous system==
*superior vena cava
*inferior vena cava
*azygos vein
*hemyazygos vein
*portal vein

==pulmonary arterial system==
*right pulmonary artery
*left pulmonary artery

==pulmonary venous system==
*right superior pulmonary vein
*right inferior pulmonary vein
*left superior pulmonary vein
*left inferior pulmonary vein

==lymphatic system==
===lymphatic ducts===
*right lymphatic duct
*thoracic duct

===lymph node groups===
*cervical lymph nodes
*supraclavicular lymph nodes
*occipital lymph nodes
*pre-auricular lymph nodes
*infraclavicular lymph nodes
*axillary lymph nodes
*pectoral lymph nodes
*epitrochlear/brachial lymph nodes
*mediastinal lymph nodes
*mesenteric lymph nodes
*para-aortal lymph nodes
*iliac lymph nodes
*inguinal lymph nodes
*femoral lymph nodes
*popliteal lymph nodes

=material=
*air
*liquid
==biological material==
*blood
*cerebro-spinal fluid
===tissue===
*gray matter
*white matter
*bone
*cartilage
*fat
*connective tissue

=pathology=
*tumor
*edema
*bleeding
*necrosis
*clot
*embolism

=foreign objects=
*surgical needle

=segmentation regions=
*background
*unsegmented region

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*user defined regions
**region 1
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**region 8
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**region 16