https://www.slicer.org/w/api.php?action=feedcontributions&feedformat=atom&user=Xiaojun Slicer Wiki - User contributions [en] 2026-06-08T07:41:47Z User contributions MediaWiki 1.33.0 https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/ModelClip&diff=55124 Documentation/Nightly/Extensions/ModelClip 2017-10-17T09:57:00Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jun Lin and Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/Ting-Jia/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |[[Image:ModelClipScreenShot.png|thumb|650px|The screenshot of the ModelClip module]]<br /> |}<br /> <br /> {|<br /> |[[Image:ModelClipAnimatedGif.gif|The animated GIF of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=File:Add3DText.png&diff=45525 File:Add3DText.png 2016-05-20T07:37:32Z <p>Xiaojun: Xiaojun uploaded a new version of File:Add3DText.png</p> <hr /> <div>This is an icon for the module Add3DText.</div> Xiaojun https://www.slicer.org/w/index.php?title=File:Add3DText_ScreenShot.png&diff=45524 File:Add3DText ScreenShot.png 2016-05-20T07:36:51Z <p>Xiaojun: Xiaojun uploaded a new version of File:Add3DText ScreenShot.png</p> <hr /> <div>Screen shot of the module Add3DText.</div> Xiaojun https://www.slicer.org/w/index.php?title=File:Add3DText_2.png&diff=45523 File:Add3DText 2.png 2016-05-20T07:35:47Z <p>Xiaojun: Xiaojun uploaded a new version of File:Add3DText 2.png</p> <hr /> <div></div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/4.5/Extensions/PorousScaffoldsExtension&diff=45522 Documentation/4.5/Extensions/PorousScaffoldsExtension 2016-05-20T03:31:53Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> <br /> Extension: [[Documentation/{{documentation/version}}/Extensions/PorousScaffoldsExtension|Porous Scaffolds]]&lt;br&gt;&lt;br&gt;<br /> <br /> Acknowledgements:<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> <br /> <br /> Get this extension: [https://github.com/f-tang/PorousScaffolds Code Resource] &lt;br&gt;&lt;br&gt;<br /> <br /> Author: Fenghe Tang, Xiaojun Chen (Shanghai Jiao Tong University) &lt;br&gt;<br /> Contact1: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Contact2: Fenghe Tang, &lt;email&gt;miketfh@sjtu.edu.cn&lt;/email&gt;&lt;br&gt;<br /> <br /> {|<br /> |[[Image:SJTU_Logo.png|thumb|Shanghai Jiao Tong University]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Module Description}}<br /> <br /> Porous Scaffolds is a Slicer Loadable module to generate pourous scaffold model based on the shape of a chosen model(.stl format). &lt;br&gt;&lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Use Cases}}<br /> <br /> {|<br /> |[[Image:PorousScaffolds_ScreenShot.png|thumb|720px|Screen shot]]<br /> |}<br /> <br /> {|<br /> |[[Image:PorousScaffolds_3.png|thumb|320px|original model]]<br /> |[[Image:PorousScaffolds.png|thumb|320px|scaffold of cube-shaped pores]]<br /> |[[Image:PorousScaffolds_2.png|thumb|320px|scaffold of tetrahedron-shaped pores]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> <br /> *Panels:<br /> <br /> {|<br /> |[[Image:PorousScaffolds_panels.png|thumb|400px|Module UI]]<br /> |}<br /> <br /> *1. MRMLViewTree: To hide/display/delete/rename a model node.<br /> *2. &quot;Select a Model&quot; combo box: Select a model to generate a porous scaffold.<br /> *3. &quot;Select pores shape&quot; combo box: Select the shape of pores. &quot;Cube&quot; and &quot;Tetrahedron&quot; are available.<br /> *4. &quot;Pores size&quot; slider: Drag to adjust the pore size.<br /> *5. &quot;OK&quot; button: Start generating the porous scaffold model. <br /> **It will create a NEW model instead of modifying the original one. <br /> *6. &quot;Cancel&quot; button: Cancel your operation.<br /> *7. Processing bar.<br /> <br /> <br /> *Before you use this module, please copy the folder &quot;pores&quot; in this module source to your Slicer.exe root path.<br /> *If you try to use a model too complcated or too large in this module, it may cause crash of Slicer. It is an existing problem. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|References}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Information for Developers}}<br /> For technical questions or problems, please use contacts in the introduction. &lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-footer}}<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/PorousScaffoldsExtension&diff=45521 Documentation/Nightly/Extensions/PorousScaffoldsExtension 2016-05-20T03:30:12Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> <br /> Extension: [[Documentation/{{documentation/version}}/Extensions/PorousScaffoldsExtension|Porous Scaffolds]]&lt;br&gt;&lt;br&gt;<br /> <br /> Acknowledgements:<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> <br /> <br /> Get this extension: [https://github.com/f-tang/PorousScaffolds Code Resource] &lt;br&gt;&lt;br&gt;<br /> <br /> Author: Fenghe Tang, Xiaojun Chen (Shanghai Jiao Tong University) &lt;br&gt;<br /> Contact1: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Contact2: Fenghe Tang, &lt;email&gt;miketfh@sjtu.edu.cn&lt;/email&gt;&lt;br&gt;<br /> <br /> {|<br /> |[[Image:SJTU_Logo.png|thumb|Shanghai Jiao Tong University]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Module Description}}<br /> <br /> Porous Scaffolds is a Slicer Loadable module to generate pourous scaffold model based on the shape of a chosen model(.stl format). &lt;br&gt;&lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Use Cases}}<br /> <br /> {|<br /> |[[Image:PorousScaffolds_ScreenShot.png|thumb|720px|Screen shot]]<br /> |}<br /> <br /> {|<br /> |[[Image:PorousScaffolds_3.png|thumb|320px|original model]]<br /> |[[Image:PorousScaffolds.png|thumb|320px|scaffold of cube-shaped pores]]<br /> |[[Image:PorousScaffolds_2.png|thumb|320px|scaffold of tetrahedron-shaped pores]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> <br /> *Panels:<br /> <br /> {|<br /> |[[Image:PorousScaffolds_panels.png|thumb|400px|Module UI]]<br /> |}<br /> <br /> *1. MRMLViewTree: To hide/display/delete/rename a model node.<br /> *2. &quot;Select a Model&quot; combo box: Select a model to generate a porous scaffold.<br /> *3. &quot;Select pores shape&quot; combo box: Select the shape of pores. &quot;Cube&quot; and &quot;Tetrahedron&quot; are available.<br /> *4. &quot;Pores size&quot; slider: Drag to adjust the pore size.<br /> *5. &quot;OK&quot; button: Start generating the porous scaffold model. <br /> **It will create a NEW model instead of modifying the original one. <br /> *6. &quot;Cancel&quot; button: Cancel your operation.<br /> *7. Processing bar.<br /> <br /> <br /> *Before you use this module, please copy the folder &quot;pores&quot; in this module source to your Slicer.exe root path.<br /> *If you try to use a model too complcated or too large in this module, it may cause crash of Slicer. It is an existing problem. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|References}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Information for Developers}}<br /> For technical questions or problems, please use contacts in the introduction. &lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-footer}}<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}</div> Xiaojun https://www.slicer.org/w/index.php?title=File:PorousScaffolds_3.png&diff=45520 File:PorousScaffolds 3.png 2016-05-20T03:28:43Z <p>Xiaojun: </p> <hr /> <div></div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/4.5/Extensions/PorousScaffoldsExtension&diff=45519 Documentation/4.5/Extensions/PorousScaffoldsExtension 2016-05-20T03:19:42Z <p>Xiaojun: Created page with &quot;&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt; &lt;!-- ---------------------------- --&gt; {{documentation/{{documentation/version}}/module-header}} &lt;!-- --------------------...&quot;</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> <br /> Extension: [[Documentation/{{documentation/version}}/Extensions/PorousScaffoldsExtension|Porous Scaffolds]]&lt;br&gt;&lt;br&gt;<br /> <br /> Acknowledgements:<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> <br /> <br /> Get this extension: [https://github.com/f-tang/PorousScaffolds Code Resource] &lt;br&gt;&lt;br&gt;<br /> <br /> Author: Fenghe Tang, Xiaojun Chen (Shanghai Jiao Tong University) &lt;br&gt;<br /> Contact1: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Contact2: Fenghe Tang, &lt;email&gt;miketfh@sjtu.edu.cn&lt;/email&gt;&lt;br&gt;<br /> <br /> {|<br /> |[[Image:SJTU_Logo.png|thumb|Shanghai Jiao Tong University]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Module Description}}<br /> <br /> Porous Scaffolds is a Slicer Loadable module to generate pourous scaffold model based on the shape of a chosen model(.stl format). &lt;br&gt;&lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Use Cases}}<br /> <br /> {|<br /> |[[Image:PorousScaffolds_ScreenShot.png|thumb|720px|Screen shot]]<br /> |}<br /> <br /> {|<br /> |[[Image:PorousScaffolds.png|thumb|360px|scaffold of cube-shaped pores]]<br /> |[[Image:PorousScaffolds_2.png|thumb|360px|scaffold of tetrahedron-shaped pores]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> <br /> *Panels:<br /> <br /> {|<br /> |[[Image:PorousScaffolds_panels.png|thumb|400px|Module UI]]<br /> |}<br /> <br /> *1. MRMLViewTree: To hide/display/delete/rename a model node.<br /> *2. &quot;Select a Model&quot; combo box: Select a model to generate a porous scaffold.<br /> *3. &quot;Select pores shape&quot; combo box: Select the shape of pores. &quot;Cube&quot; and &quot;Tetrahedron&quot; are available.<br /> *4. &quot;Pores size&quot; slider: Drag to adjust the pore size.<br /> *5. &quot;OK&quot; button: Start generating the porous scaffold model. <br /> **It will create a NEW model instead of modifying the original one. <br /> *6. &quot;Cancel&quot; button: Cancel your operation.<br /> *7. Processing bar.<br /> <br /> <br /> *Before you use this module, please copy the folder &quot;pores&quot; in this module source to your Slicer.exe root path.<br /> *If you try to use a model too complcated or too large in this module, it may cause crash of Slicer. It is an existing problem. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|References}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Information for Developers}}<br /> For technical questions or problems, please use contacts in the introduction. &lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-footer}}<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/4.5/ModuleExtensionListing/Extensions_by_category&diff=45518 Documentation/4.5/ModuleExtensionListing/Extensions by category 2016-05-20T03:18:44Z <p>Xiaojun: </p> <hr /> <div>__NOTOC__<br /> * [[#Extensions_by_category|Extensions by category]]<br /> = Extensions by category =<br /> 24 categories:<br /> * [[#Extensions_by_category_Cardiac|Cardiac]]<br /> * [[#Extensions_by_category_Cardiac_MRI_toolkit|Cardiac MRI toolkit]]<br /> * [[#Extensions_by_category_Chest_Imaging_Platform|Chest Imaging Platform]]<br /> * [[#Extensions_by_category_Converters|Converters]]<br /> * [[#Extensions_by_category_Developer_Tools|Developer Tools]]<br /> * [[#Extensions_by_category_Diffusion|Diffusion]]<br /> * [[#Extensions_by_category_Editor_Effects|Editor Effects]]<br /> * [[#Extensions_by_category_Exporter|Exporter]]<br /> * [[#Extensions_by_category_IGT|IGT]]<br /> * [[#Extensions_by_category_Informatics|Informatics]]<br /> * [[#Extensions_by_category_Mesh_Generation|Mesh Generation]]<br /> * [[#Extensions_by_category_Microscopy|Microscopy]]<br /> * [[#Extensions_by_category_Nuclear_Medicine|Nuclear Medicine]]<br /> * [[#Extensions_by_category_Quantification|Quantification]]<br /> * [[#Extensions_by_category_Radiotherapy|Radiotherapy]]<br /> * [[#Extensions_by_category_Registration|Registration]]<br /> * [[#Extensions_by_category_Scoliosis|Scoliosis]]<br /> * [[#Extensions_by_category_Segmentation|Segmentation]]<br /> * [[#Extensions_by_category_Sequences|Sequences]]<br /> * [[#Extensions_by_category_Shape_Analysis|Shape Analysis]]<br /> * [[#Extensions_by_category_Surface_Model|Surface Model]]<br /> * [[#Extensions_by_category_Tractography|Tractography]]<br /> * [[#Extensions_by_category_Training|Training]]<br /> * [[#Extensions_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]<br /> * [[#Extensions_by_category_Wizards|Wizards]]<br /> &lt;span id='Extensions_by_category_Cardiac'&gt;&lt;/span&gt;<br /> == Cardiac ==<br /> * [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]]<br /> * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]<br /> &lt;span id='Extensions_by_category_Cardiac_MRI_toolkit'&gt;&lt;/span&gt;<br /> == Cardiac MRI toolkit ==<br /> * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]<br /> &lt;span id='Extensions_by_category_Chest_Imaging_Platform'&gt;&lt;/span&gt;<br /> == Chest Imaging Platform ==<br /> * [http://www.chestimagingplatform.org Chest Imaging Platform]<br /> &lt;span id='Extensions_by_category_Converters'&gt;&lt;/span&gt;<br /> == Converters ==<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]<br /> &lt;span id='Extensions_by_category_Developer_Tools'&gt;&lt;/span&gt;<br /> == Developer Tools ==<br /> * [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]]<br /> * [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]]<br /> * [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]]<br /> * [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]]<br /> &lt;span id='Extensions_by_category_Diffusion'&gt;&lt;/span&gt;<br /> == Diffusion ==<br /> * [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|Resample DTIlog Euclidean]]<br /> &lt;span id='Extensions_by_category_Editor_Effects'&gt;&lt;/span&gt;<br /> == Editor Effects ==<br /> * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]<br /> &lt;span id='Extensions_by_category_Exporter'&gt;&lt;/span&gt;<br /> == Exporter ==<br /> * [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]<br /> &lt;span id='Extensions_by_category_IGT'&gt;&lt;/span&gt;<br /> == IGT ==<br /> * [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]<br /> * [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]<br /> * [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]]<br /> * [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]]<br /> * [https://github.com/SlicerIGT/LumpNav Lump Nav]<br /> * [[Documentation/Nightly/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]<br /> * [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]]<br /> * [[Documentation/Nightly/Extensions/iGyne|i Gyne]]<br /> * [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]]<br /> &lt;span id='Extensions_by_category_Informatics'&gt;&lt;/span&gt;<br /> == Informatics ==<br /> * [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]<br /> * [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]<br /> * [[Documentation/Nightly/Extensions/Reporting|Reporting]]<br /> * [[Documentation/Nightly/Extensions/mpReview|mp Review]]<br /> * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]<br /> * [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]]<br /> &lt;span id='Extensions_by_category_Mesh_Generation'&gt;&lt;/span&gt;<br /> == Mesh Generation ==<br /> * [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]<br /> * [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]]<br /> * [[Documentation/Nightly/Extensions/Add3DTextExtension|Add3DText Extension]]<br /> * [[Documentation/Nightly/Extensions/PorousScaffoldsExtension|Porous Scaffolds Extension]]<br /> &lt;span id='Extensions_by_category_Microscopy'&gt;&lt;/span&gt;<br /> <br /> == Microscopy ==<br /> * [[Documentation/Nightly/Extensions/IASEM|IASEM]]<br /> &lt;span id='Extensions_by_category_Nuclear_Medicine'&gt;&lt;/span&gt;<br /> == Nuclear Medicine ==<br /> * [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis]<br /> &lt;span id='Extensions_by_category_Quantification'&gt;&lt;/span&gt;<br /> == Quantification ==<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension]<br /> * [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis]<br /> * [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension]<br /> * [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]]<br /> * [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension]<br /> * [[Documentation/Nightly/Extensions/Q3DC|Q3DC]]<br /> * [[Documentation/Nightly/Extensions/ShapePopulationViewer|Shape Population Viewer]]<br /> * [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]]<br /> &lt;span id='Extensions_by_category_Radiotherapy'&gt;&lt;/span&gt;<br /> == Radiotherapy ==<br /> * [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]]<br /> * [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]<br /> &lt;span id='Extensions_by_category_Registration'&gt;&lt;/span&gt;<br /> == Registration ==<br /> * [[Documentation/Nightly/Extensions/CMFreg|CMFreg]]<br /> * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]<br /> &lt;span id='Extensions_by_category_Scoliosis'&gt;&lt;/span&gt;<br /> == Scoliosis ==<br /> * [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]]<br /> &lt;span id='Extensions_by_category_Segmentation'&gt;&lt;/span&gt;<br /> == Segmentation ==<br /> * [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Segment]<br /> * [http://www.nitrc.org/projects/abc ABC]<br /> * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]<br /> * [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]]<br /> * [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]<br /> * [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]]<br /> * [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]]<br /> * [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]]<br /> * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]<br /> * [https://github.com/Tomnl/Slicer-Wasp Wasp]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation]<br /> * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]<br /> * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]]<br /> &lt;span id='Extensions_by_category_Sequences'&gt;&lt;/span&gt;<br /> == Sequences ==<br /> * [[Documentation/Nightly/Extensions/Sequences|Sequences]]<br /> &lt;span id='Extensions_by_category_Shape_Analysis'&gt;&lt;/span&gt;<br /> == Shape Analysis ==<br /> * [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]]<br /> &lt;span id='Extensions_by_category_Surface_Model'&gt;&lt;/span&gt;<br /> == Surface Model ==<br /> * [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]]<br /> * [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]<br /> &lt;span id='Extensions_by_category_Tractography'&gt;&lt;/span&gt;<br /> == Tractography ==<br /> * [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]]<br /> * [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]]<br /> &lt;span id='Extensions_by_category_Training'&gt;&lt;/span&gt;<br /> == Training ==<br /> * [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]]<br /> &lt;span id='Extensions_by_category_Vascular_Modeling_Toolkit'&gt;&lt;/span&gt;<br /> == Vascular Modeling Toolkit ==<br /> * [http://slicer.vmtk.org/ VMTK]<br /> &lt;span id='Extensions_by_category_Wizards'&gt;&lt;/span&gt;<br /> == Wizards ==<br /> * [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]]<br /> __NOTOC__</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/PorousScaffoldsExtension&diff=45517 Documentation/Nightly/Extensions/PorousScaffoldsExtension 2016-05-20T03:17:15Z <p>Xiaojun: Create PorousScaffolds Module</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> <br /> Extension: [[Documentation/{{documentation/version}}/Extensions/PorousScaffoldsExtension|Porous Scaffolds]]&lt;br&gt;&lt;br&gt;<br /> <br /> Acknowledgements:<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> <br /> <br /> Get this extension: [https://github.com/f-tang/PorousScaffolds Code Resource] &lt;br&gt;&lt;br&gt;<br /> <br /> Author: Fenghe Tang, Xiaojun Chen (Shanghai Jiao Tong University) &lt;br&gt;<br /> Contact1: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Contact2: Fenghe Tang, &lt;email&gt;miketfh@sjtu.edu.cn&lt;/email&gt;&lt;br&gt;<br /> <br /> {|<br /> |[[Image:SJTU_Logo.png|thumb|Shanghai Jiao Tong University]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Module Description}}<br /> <br /> Porous Scaffolds is a Slicer Loadable module to generate pourous scaffold model based on the shape of a chosen model(.stl format). &lt;br&gt;&lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Use Cases}}<br /> <br /> {|<br /> |[[Image:PorousScaffolds_ScreenShot.png|thumb|720px|Screen shot]]<br /> |}<br /> <br /> {|<br /> |[[Image:PorousScaffolds.png|thumb|360px|scaffold of cube-shaped pores]]<br /> |[[Image:PorousScaffolds_2.png|thumb|360px|scaffold of tetrahedron-shaped pores]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> <br /> *Panels:<br /> <br /> {|<br /> |[[Image:PorousScaffolds_panels.png|thumb|400px|Module UI]]<br /> |}<br /> <br /> *1. MRMLViewTree: To hide/display/delete/rename a model node.<br /> *2. &quot;Select a Model&quot; combo box: Select a model to generate a porous scaffold.<br /> *3. &quot;Select pores shape&quot; combo box: Select the shape of pores. &quot;Cube&quot; and &quot;Tetrahedron&quot; are available.<br /> *4. &quot;Pores size&quot; slider: Drag to adjust the pore size.<br /> *5. &quot;OK&quot; button: Start generating the porous scaffold model. <br /> **It will create a NEW model instead of modifying the original one. <br /> *6. &quot;Cancel&quot; button: Cancel your operation.<br /> *7. Processing bar.<br /> <br /> <br /> *Before you use this module, please copy the folder &quot;pores&quot; in this module source to your Slicer.exe root path.<br /> *If you try to use a model too complcated or too large in this module, it may cause crash of Slicer. It is an existing problem. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|References}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Information for Developers}}<br /> For technical questions or problems, please use contacts in the introduction. &lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-footer}}<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}</div> Xiaojun https://www.slicer.org/w/index.php?title=File:PorousScaffolds_panels.png&diff=45516 File:PorousScaffolds panels.png 2016-05-20T02:50:07Z <p>Xiaojun: </p> <hr /> <div></div> Xiaojun https://www.slicer.org/w/index.php?title=File:PorousScaffolds_2.png&diff=45515 File:PorousScaffolds 2.png 2016-05-20T02:49:45Z <p>Xiaojun: </p> <hr /> <div></div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/ModuleExtensionListing/Extensions_by_category&diff=45514 Documentation/Nightly/ModuleExtensionListing/Extensions by category 2016-05-20T02:27:37Z <p>Xiaojun: Publish the PorousScaffolds Extension</p> <hr /> <div>__NOTOC__<br /> * [[#Extensions_by_category|Extensions by category]]<br /> = Extensions by category =<br /> 24 categories:<br /> * [[#Extensions_by_category_Cardiac|Cardiac]]<br /> * [[#Extensions_by_category_Cardiac_MRI_toolkit|Cardiac MRI toolkit]]<br /> * [[#Extensions_by_category_Chest_Imaging_Platform|Chest Imaging Platform]]<br /> * [[#Extensions_by_category_Converters|Converters]]<br /> * [[#Extensions_by_category_Developer_Tools|Developer Tools]]<br /> * [[#Extensions_by_category_Diffusion|Diffusion]]<br /> * [[#Extensions_by_category_Editor_Effects|Editor Effects]]<br /> * [[#Extensions_by_category_Examples|Examples]]<br /> * [[#Extensions_by_category_Exporter|Exporter]]<br /> * [[#Extensions_by_category_Filtering|Filtering]]<br /> * [[#Extensions_by_category_IGT|IGT]]<br /> * [[#Extensions_by_category_Informatics|Informatics]]<br /> * [[#Extensions_by_category_Libraries|Libraries]]<br /> * [[#Extensions_by_category_Mesh_Generation|Mesh Generation]]<br /> * [[#Extensions_by_category_Microscopy|Microscopy]]<br /> * [[#Extensions_by_category_Nuclear_Medicine|Nuclear Medicine]]<br /> * [[#Extensions_by_category_Quantification|Quantification]]<br /> * [[#Extensions_by_category_Radiotherapy|Radiotherapy]]<br /> * [[#Extensions_by_category_Registration|Registration]]<br /> * [[#Extensions_by_category_Scoliosis|Scoliosis]]<br /> * [[#Extensions_by_category_Segmentation|Segmentation]]<br /> * [[#Extensions_by_category_Sequences|Sequences]]<br /> * [[#Extensions_by_category_Shape_Analysis|Shape Analysis]]<br /> * [[#Extensions_by_category_Tractography|Tractography]]<br /> * [[#Extensions_by_category_Training|Training]]<br /> * [[#Extensions_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]<br /> * [[#Extensions_by_category_Wizards|Wizards]]<br /> &lt;span id='Extensions_by_category_Cardiac'&gt;&lt;/span&gt;<br /> == Cardiac ==<br /> * [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]]<br /> * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]<br /> &lt;span id='Extensions_by_category_Cardiac_MRI_toolkit'&gt;&lt;/span&gt;<br /> == Cardiac MRI toolkit ==<br /> * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]<br /> &lt;span id='Extensions_by_category_Chest_Imaging_Platform'&gt;&lt;/span&gt;<br /> == Chest Imaging Platform ==<br /> * [http://www.chestimagingplatform.org Chest Imaging Platform]<br /> &lt;span id='Extensions_by_category_Converters'&gt;&lt;/span&gt;<br /> == Converters ==<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]<br /> &lt;span id='Extensions_by_category_Developer_Tools'&gt;&lt;/span&gt;<br /> == Developer Tools ==<br /> * [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]]<br /> * [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]]<br /> * [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]]<br /> * [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]]<br /> &lt;span id='Extensions_by_category_Diffusion'&gt;&lt;/span&gt;<br /> == Diffusion ==<br /> * [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|Resample DTIlog Euclidean]]<br /> &lt;span id='Extensions_by_category_Editor_Effects'&gt;&lt;/span&gt;<br /> == Editor Effects ==<br /> * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]<br /> &lt;span id='Extensions_by_category_Exporter'&gt;&lt;/span&gt;<br /> == Examples ==<br /> * [[Documentation/Nightly/Extensions/OpenCVExample|OpenCV Example]]<br /> &lt;span id='Extensions_by_category_Examples'&gt;&lt;/span&gt;<br /> == Exporter ==<br /> * [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]<br /> &lt;span id='Extensions_by_category_IGT'&gt;&lt;/span&gt;<br /> == Filtering ==<br /> * [[Documentation/Nightly/Extensions/pyLARSlicerExtension|pyLAR Slicer Extension]]<br /> &lt;span id='Extensions_by_category_Filtering'&gt;&lt;/span&gt;<br /> == IGT ==<br /> * [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]<br /> * [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]]<br /> * [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]]<br /> * [https://github.com/SlicerIGT/LumpNav Lump Nav]<br /> * [[Documentation/Nightly/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]<br /> * [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]]<br /> * [[Documentation/Nightly/Extensions/iGyne|i Gyne]]<br /> * [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]]<br /> &lt;span id='Extensions_by_category_Informatics'&gt;&lt;/span&gt;<br /> == Informatics ==<br /> * [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]<br /> * [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]<br /> * [[Documentation/Nightly/Extensions/Reporting|Reporting]]<br /> * [[Documentation/Nightly/Extensions/mpReview|mp Review]]<br /> * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]<br /> * [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]]<br /> &lt;span id='Extensions_by_category_Mesh_Generation'&gt;&lt;/span&gt;<br /> == Libraries ==<br /> * [[Documentation/Nightly/Extensions/SlicerOpenCV|SlicerOpenCV]]<br /> &lt;span id='Extensions_by_category_Libraries'&gt;&lt;/span&gt;<br /> == Mesh Generation ==<br /> * [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]<br /> * [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]]<br /> * [[Documentation/Nightly/Extensions/Add3DTextExtension|Add3DText Extension]]<br /> * [[Documentation/Nightly/Extensions/PorousScaffoldsExtension|Porous Scaffolds Extension]]<br /> &lt;span id='Extensions_by_category_Microscopy'&gt;&lt;/span&gt;<br /> <br /> == Microscopy ==<br /> * [[Documentation/Nightly/Extensions/IASEM|IASEM]]<br /> &lt;span id='Extensions_by_category_Nuclear_Medicine'&gt;&lt;/span&gt;<br /> == Nuclear Medicine ==<br /> * [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis]<br /> &lt;span id='Extensions_by_category_Quantification'&gt;&lt;/span&gt;<br /> == Quantification ==<br /> * [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis]<br /> * [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]]<br /> * [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]]<br /> * [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]]<br /> * [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]]<br /> &lt;span id='Extensions_by_category_Radiotherapy'&gt;&lt;/span&gt;<br /> == Radiotherapy ==<br /> * [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]]<br /> * [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]<br /> &lt;span id='Extensions_by_category_Registration'&gt;&lt;/span&gt;<br /> == Registration ==<br /> * [[Documentation/Nightly/Extensions/CMFreg|CMFreg]]<br /> * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]<br /> &lt;span id='Extensions_by_category_Scoliosis'&gt;&lt;/span&gt;<br /> == Scoliosis ==<br /> * [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]]<br /> &lt;span id='Extensions_by_category_Segmentation'&gt;&lt;/span&gt;<br /> == Segmentation ==<br /> * [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Segment]<br /> * [http://www.nitrc.org/projects/abc ABC]<br /> * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]<br /> * [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]]<br /> * [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]<br /> * [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]]<br /> * [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]]<br /> * [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]]<br /> * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]<br /> * [https://github.com/Tomnl/Slicer-Wasp Wasp]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation]<br /> * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]<br /> * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]]<br /> &lt;span id='Extensions_by_category_Sequences'&gt;&lt;/span&gt;<br /> == Sequences ==<br /> * [[Documentation/Nightly/Extensions/Sequences|Sequences]]<br /> &lt;span id='Extensions_by_category_Shape_Analysis'&gt;&lt;/span&gt;<br /> == Shape Analysis ==<br /> * [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]<br /> * [[Documentation/Nightly/Extensions/Q3DC|Q3DC]]<br /> * [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]]<br /> * [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension]<br /> &lt;span id='Extensions_by_category_Tractography'&gt;&lt;/span&gt;<br /> == Tractography ==<br /> * [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]]<br /> * [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]]<br /> &lt;span id='Extensions_by_category_Training'&gt;&lt;/span&gt;<br /> == Training ==<br /> * [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]]<br /> &lt;span id='Extensions_by_category_Vascular_Modeling_Toolkit'&gt;&lt;/span&gt;<br /> == Vascular Modeling Toolkit ==<br /> * [http://slicer.vmtk.org/ VMTK]<br /> &lt;span id='Extensions_by_category_Wizards'&gt;&lt;/span&gt;<br /> == Wizards ==<br /> * [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]]<br /> __NOTOC__</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/Add3DTextExtension&diff=45507 Documentation/Nightly/Extensions/Add3DTextExtension 2016-05-19T08:21:47Z <p>Xiaojun: Update on 2016-05-19</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> <br /> Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|Add3DText]]&lt;br&gt;&lt;br&gt;<br /> <br /> Acknowledgements:<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> <br /> <br /> Get this extension: [https://github.com/f-tang/Add3DText Code Resource] &lt;br&gt;&lt;br&gt;<br /> <br /> Author: Fenghe Tang, Xiaojun Chen (Shanghai Jiao Tong University) &lt;br&gt;<br /> Contact1: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Contact2: Fenghe Tang, &lt;email&gt;miketfh@sjtu.edu.cn&lt;/email&gt;&lt;br&gt;<br /> <br /> {|<br /> |[[Image:SJTU_Logo.png|thumb|Shanghai Jiao Tong University]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Module Description}}<br /> <br /> Add3DText is a Slicer Loadable module that allows users to emboss 3D text on the model(.stl format). &lt;br&gt;&lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Use Cases}}<br /> {|<br /> |[[Image:Add3DText_ScreenShot.png|thumb|720px|Screen shot]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> <br /> *Panels:<br /> <br /> {|<br /> |[[Image:Add3DText_Panel.png|thumb|360px|Module UI]]<br /> |}<br /> <br /> *1. MRMLViewTree: To hide/display/delete/rename a model node.<br /> *2. Model combo box: Select a model that you want to emboss your text on.<br /> *3. Text edit: Type your text here, English Characters &amp; Numbers ONLY.<br /> *4. &quot;Set text&quot; button: Confirm your text.<br /> *5. &quot;Locate text&quot; button: Click this button, and then click on the model to locate your text.<br /> **If you want to re-locate your text, click this button again.<br /> *6. &quot;Text size&quot; slider: Drag to adjust the size of your text.<br /> *7. &quot;OK&quot; button: Apply your text on the model. <br /> **It will create a NEW model instead of modifying the original one. <br /> *8. &quot;Cancel&quot; button: Cancel your operation.<br /> <br /> <br /> *Before you locate the text, please first &quot;center the 3D view on the scene&quot;, or the text location may be affected.<br /> <br /> {|<br /> |[[Image:Add3DText_3.png|thumb|480px|Center the 3D ciew on the scene]]<br /> |}<br /> <br /> *The direction of the text is always from left to right on your screen. To adjust the relative direction of the model and your text, you can rotate the model before locate your text.<br /> <br /> {|<br /> |[[Image:Add3DText.png|thumb|Relative direction 1]]<br /> |[[Image:Add3DText_2.png|thumb|Relative direction 2]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|References}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Information for Developers}}<br /> For technical questions or problems, please use contacts in the introduction. &lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-footer}}<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/4.5/Extensions/Add3DTextExtension&diff=45506 Documentation/4.5/Extensions/Add3DTextExtension 2016-05-19T08:20:31Z <p>Xiaojun: Update on 2016-05-19</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> <br /> Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|Add3DText]]&lt;br&gt;&lt;br&gt;<br /> <br /> Acknowledgements:<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> <br /> <br /> Get this extension: [https://github.com/f-tang/Add3DText Code Resource] &lt;br&gt;&lt;br&gt;<br /> <br /> Author: Fenghe Tang, Xiaojun Chen (Shanghai Jiao Tong University) &lt;br&gt;<br /> Contact1: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Contact2: Fenghe Tang, &lt;email&gt;miketfh@sjtu.edu.cn&lt;/email&gt;&lt;br&gt;<br /> <br /> {|<br /> |[[Image:SJTU_Logo.png|thumb|Shanghai Jiao Tong University]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Module Description}}<br /> <br /> Add3DText is a Slicer Loadable module that allows users to emboss 3D text on the model(.stl format). &lt;br&gt;&lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Use Cases}}<br /> {|<br /> |[[Image:Add3DText_ScreenShot.png|thumb|720px|Screen shot]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> <br /> *Panels:<br /> <br /> {|<br /> |[[Image:Add3DText_Panel.png|thumb|360px|Module UI]]<br /> |}<br /> <br /> *1. MRMLViewTree: To hide/display/delete/rename a model node.<br /> *2. Model combo box: Select a model that you want to emboss your text on.<br /> *3. Text edit: Type your text here, English Characters &amp; Numbers ONLY.<br /> *4. &quot;Set text&quot; button: Confirm your text.<br /> *5. &quot;Locate text&quot; button: Click this button, and then click on the model to locate your text.<br /> **If you want to re-locate your text, click this button again.<br /> *6. &quot;Text size&quot; slider: Drag to adjust the size of your text.<br /> *7. &quot;OK&quot; button: Apply your text on the model. <br /> **It will create a NEW model instead of modifying the original one. <br /> *8. &quot;Cancel&quot; button: Cancel your operation.<br /> <br /> <br /> *Before you locate the text, please first &quot;center the 3D view on the scene&quot;, or the text location may be affected.<br /> <br /> {|<br /> |[[Image:Add3DText_3.png|thumb|480px|Center the 3D ciew on the scene]]<br /> |}<br /> <br /> *The direction of the text is always from left to right on your screen. To adjust the relative direction of the model and your text, you can rotate the model before locate your text.<br /> <br /> {|<br /> |[[Image:Add3DText.png|thumb|Relative direction 1]]<br /> |[[Image:Add3DText_2.png|thumb|Relative direction 2]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|References}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Information for Developers}}<br /> For technical questions or problems, please use contacts in the introduction. &lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-footer}}<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/4.5/Extensions/Add3DTextExtension&diff=45505 Documentation/4.5/Extensions/Add3DTextExtension 2016-05-19T08:18:38Z <p>Xiaojun: Update on 2016-05-19</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> <br /> Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|Add3DText]]&lt;br&gt;&lt;br&gt;<br /> <br /> Acknowledgements:<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> <br /> <br /> Get this extension: [https://github.com/f-tang/Add3DText Code Resource] &lt;br&gt;&lt;br&gt;<br /> <br /> Author: Fenghe Tang, Xiaojun Chen (Shanghai Jiao Tong University) &lt;br&gt;<br /> Contact1: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Contact2: Fenghe Tang, &lt;email&gt;miketfh@sjtu.edu.cn&lt;/email&gt;&lt;br&gt;<br /> <br /> {|<br /> |[[Image:SJTU_Logo.png|thumb|Shanghai Jiao Tong University]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Module Description}}<br /> <br /> Add3DText is a Slicer Loadable module that allows users to emboss 3D text to the model(.stl format). &lt;br&gt;&lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Use Cases}}<br /> {|<br /> |[[Image:Add3DText_ScreenShot.png|thumb|720px|Screen shot]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> <br /> *Panels:<br /> <br /> {|<br /> |[[Image:Add3DText_Panel.png|thumb|360px|Module UI]]<br /> |}<br /> <br /> *1. MRMLViewTree: To hide/display/delete/rename a model node.<br /> *2. Model combo box: Select a model that you want to emboss your text on.<br /> *3. Text edit: Type your text here, English Characters &amp; Numbers ONLY.<br /> *4. &quot;Set text&quot; button: Confirm your text.<br /> *5. &quot;Locate text&quot; button: Click this button, and then click on the model to locate your text.<br /> **If you want to re-locate your text, click this button again.<br /> *6. &quot;Text size&quot; slider: Drag to adjust the size of your text.<br /> *7. &quot;OK&quot; button: Apply your text on the model. <br /> **It will create a NEW model instead of modifying the original one. <br /> *8. &quot;Cancel&quot; button: Cancel your operation.<br /> <br /> <br /> *Before you locate the text, please first &quot;center the 3D view on the scene&quot;, or the text location may be affected.<br /> <br /> {|<br /> |[[Image:Add3DText_3.png|thumb|480px|Center the 3D ciew on the scene]]<br /> |}<br /> <br /> *The direction of the text is always from left to right on your screen. To adjust the relative direction of the model and your text, you can rotate the model before locate your text.<br /> <br /> {|<br /> |[[Image:Add3DText.png|thumb|Relative direction 1]]<br /> |[[Image:Add3DText_2.png|thumb|Relative direction 2]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|References}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Information for Developers}}<br /> For technical questions or problems, please use contacts in the introduction. &lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-footer}}<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/4.5/ModuleExtensionListing/Extensions_by_category&diff=45504 Documentation/4.5/ModuleExtensionListing/Extensions by category 2016-05-19T08:15:38Z <p>Xiaojun: Update on 2016-05-19</p> <hr /> <div>__NOTOC__<br /> * [[#Extensions_by_category|Extensions by category]]<br /> = Extensions by category =<br /> 24 categories:<br /> * [[#Extensions_by_category_Cardiac|Cardiac]]<br /> * [[#Extensions_by_category_Cardiac_MRI_toolkit|Cardiac MRI toolkit]]<br /> * [[#Extensions_by_category_Chest_Imaging_Platform|Chest Imaging Platform]]<br /> * [[#Extensions_by_category_Converters|Converters]]<br /> * [[#Extensions_by_category_Developer_Tools|Developer Tools]]<br /> * [[#Extensions_by_category_Diffusion|Diffusion]]<br /> * [[#Extensions_by_category_Editor_Effects|Editor Effects]]<br /> * [[#Extensions_by_category_Exporter|Exporter]]<br /> * [[#Extensions_by_category_IGT|IGT]]<br /> * [[#Extensions_by_category_Informatics|Informatics]]<br /> * [[#Extensions_by_category_Mesh_Generation|Mesh Generation]]<br /> * [[#Extensions_by_category_Microscopy|Microscopy]]<br /> * [[#Extensions_by_category_Nuclear_Medicine|Nuclear Medicine]]<br /> * [[#Extensions_by_category_Quantification|Quantification]]<br /> * [[#Extensions_by_category_Radiotherapy|Radiotherapy]]<br /> * [[#Extensions_by_category_Registration|Registration]]<br /> * [[#Extensions_by_category_Scoliosis|Scoliosis]]<br /> * [[#Extensions_by_category_Segmentation|Segmentation]]<br /> * [[#Extensions_by_category_Sequences|Sequences]]<br /> * [[#Extensions_by_category_Shape_Analysis|Shape Analysis]]<br /> * [[#Extensions_by_category_Surface_Model|Surface Model]]<br /> * [[#Extensions_by_category_Tractography|Tractography]]<br /> * [[#Extensions_by_category_Training|Training]]<br /> * [[#Extensions_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]<br /> * [[#Extensions_by_category_Wizards|Wizards]]<br /> &lt;span id='Extensions_by_category_Cardiac'&gt;&lt;/span&gt;<br /> == Cardiac ==<br /> * [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]]<br /> * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]<br /> &lt;span id='Extensions_by_category_Cardiac_MRI_toolkit'&gt;&lt;/span&gt;<br /> == Cardiac MRI toolkit ==<br /> * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]<br /> &lt;span id='Extensions_by_category_Chest_Imaging_Platform'&gt;&lt;/span&gt;<br /> == Chest Imaging Platform ==<br /> * [http://www.chestimagingplatform.org Chest Imaging Platform]<br /> &lt;span id='Extensions_by_category_Converters'&gt;&lt;/span&gt;<br /> == Converters ==<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]<br /> &lt;span id='Extensions_by_category_Developer_Tools'&gt;&lt;/span&gt;<br /> == Developer Tools ==<br /> * [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]]<br /> * [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]]<br /> * [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]]<br /> * [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]]<br /> &lt;span id='Extensions_by_category_Diffusion'&gt;&lt;/span&gt;<br /> == Diffusion ==<br /> * [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|Resample DTIlog Euclidean]]<br /> &lt;span id='Extensions_by_category_Editor_Effects'&gt;&lt;/span&gt;<br /> == Editor Effects ==<br /> * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]<br /> &lt;span id='Extensions_by_category_Exporter'&gt;&lt;/span&gt;<br /> == Exporter ==<br /> * [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]<br /> &lt;span id='Extensions_by_category_IGT'&gt;&lt;/span&gt;<br /> == IGT ==<br /> * [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]<br /> * [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]<br /> * [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]]<br /> * [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]]<br /> * [https://github.com/SlicerIGT/LumpNav Lump Nav]<br /> * [[Documentation/Nightly/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]<br /> * [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]]<br /> * [[Documentation/Nightly/Extensions/iGyne|i Gyne]]<br /> * [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]]<br /> &lt;span id='Extensions_by_category_Informatics'&gt;&lt;/span&gt;<br /> == Informatics ==<br /> * [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]<br /> * [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]<br /> * [[Documentation/Nightly/Extensions/Reporting|Reporting]]<br /> * [[Documentation/Nightly/Extensions/mpReview|mp Review]]<br /> * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]<br /> * [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]]<br /> &lt;span id='Extensions_by_category_Mesh_Generation'&gt;&lt;/span&gt;<br /> == Mesh Generation ==<br /> * [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]<br /> * [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]]<br /> * [[Documentation/Nightly/Extensions/Add3DTextExtension|Add3DText Extension]]<br /> &lt;span id='Extensions_by_category_Microscopy'&gt;&lt;/span&gt;<br /> <br /> == Microscopy ==<br /> * [[Documentation/Nightly/Extensions/IASEM|IASEM]]<br /> &lt;span id='Extensions_by_category_Nuclear_Medicine'&gt;&lt;/span&gt;<br /> == Nuclear Medicine ==<br /> * [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis]<br /> &lt;span id='Extensions_by_category_Quantification'&gt;&lt;/span&gt;<br /> == Quantification ==<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension]<br /> * [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis]<br /> * [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension]<br /> * [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]]<br /> * [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension]<br /> * [[Documentation/Nightly/Extensions/Q3DC|Q3DC]]<br /> * [[Documentation/Nightly/Extensions/ShapePopulationViewer|Shape Population Viewer]]<br /> * [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]]<br /> &lt;span id='Extensions_by_category_Radiotherapy'&gt;&lt;/span&gt;<br /> == Radiotherapy ==<br /> * [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]]<br /> * [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]<br /> &lt;span id='Extensions_by_category_Registration'&gt;&lt;/span&gt;<br /> == Registration ==<br /> * [[Documentation/Nightly/Extensions/CMFreg|CMFreg]]<br /> * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]<br /> &lt;span id='Extensions_by_category_Scoliosis'&gt;&lt;/span&gt;<br /> == Scoliosis ==<br /> * [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]]<br /> &lt;span id='Extensions_by_category_Segmentation'&gt;&lt;/span&gt;<br /> == Segmentation ==<br /> * [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Segment]<br /> * [http://www.nitrc.org/projects/abc ABC]<br /> * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]<br /> * [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]]<br /> * [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]<br /> * [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]]<br /> * [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]]<br /> * [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]]<br /> * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]<br /> * [https://github.com/Tomnl/Slicer-Wasp Wasp]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation]<br /> * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]<br /> * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]]<br /> &lt;span id='Extensions_by_category_Sequences'&gt;&lt;/span&gt;<br /> == Sequences ==<br /> * [[Documentation/Nightly/Extensions/Sequences|Sequences]]<br /> &lt;span id='Extensions_by_category_Shape_Analysis'&gt;&lt;/span&gt;<br /> == Shape Analysis ==<br /> * [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]]<br /> &lt;span id='Extensions_by_category_Surface_Model'&gt;&lt;/span&gt;<br /> == Surface Model ==<br /> * [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]]<br /> * [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]<br /> &lt;span id='Extensions_by_category_Tractography'&gt;&lt;/span&gt;<br /> == Tractography ==<br /> * [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]]<br /> * [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]]<br /> &lt;span id='Extensions_by_category_Training'&gt;&lt;/span&gt;<br /> == Training ==<br /> * [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]]<br /> &lt;span id='Extensions_by_category_Vascular_Modeling_Toolkit'&gt;&lt;/span&gt;<br /> == Vascular Modeling Toolkit ==<br /> * [http://slicer.vmtk.org/ VMTK]<br /> &lt;span id='Extensions_by_category_Wizards'&gt;&lt;/span&gt;<br /> == Wizards ==<br /> * [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]]<br /> __NOTOC__</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/Add3DTextExtension&diff=45503 Documentation/Nightly/Extensions/Add3DTextExtension 2016-05-19T08:12:34Z <p>Xiaojun: Update on 2016-05-19</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> <br /> Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|Add3DText]]&lt;br&gt;&lt;br&gt;<br /> <br /> Acknowledgements:<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> <br /> <br /> Get this extension: [https://github.com/f-tang/Add3DText Code Resource] &lt;br&gt;&lt;br&gt;<br /> <br /> Author: Fenghe Tang, Xiaojun Chen (Shanghai Jiao Tong University) &lt;br&gt;<br /> Contact1: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Contact2: Fenghe Tang, &lt;email&gt;miketfh@sjtu.edu.cn&lt;/email&gt;&lt;br&gt;<br /> <br /> {|<br /> |[[Image:SJTU_Logo.png|thumb|Shanghai Jiao Tong University]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Module Description}}<br /> <br /> Add3DText is a Slicer Loadable module that allows users to emboss 3D text to the model(.stl format). &lt;br&gt;&lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Use Cases}}<br /> {|<br /> |[[Image:Add3DText_ScreenShot.png|thumb|720px|Screen shot]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> <br /> *Panels:<br /> <br /> {|<br /> |[[Image:Add3DText_Panel.png|thumb|360px|Module UI]]<br /> |}<br /> <br /> *1. MRMLViewTree: To hide/display/delete/rename a model node.<br /> *2. Model combo box: Select a model that you want to emboss your text on.<br /> *3. Text edit: Type your text here, English Characters &amp; Numbers ONLY.<br /> *4. &quot;Set text&quot; button: Confirm your text.<br /> *5. &quot;Locate text&quot; button: Click this button, and then click on the model to locate your text.<br /> **If you want to re-locate your text, click this button again.<br /> *6. &quot;Text size&quot; slider: Drag to adjust the size of your text.<br /> *7. &quot;OK&quot; button: Apply your text on the model. <br /> **It will create a NEW model instead of modifying the original one. <br /> *8. &quot;Cancel&quot; button: Cancel your operation.<br /> <br /> <br /> *Before you locate the text, please first &quot;center the 3D view on the scene&quot;, or the text location may be affected.<br /> <br /> {|<br /> |[[Image:Add3DText_3.png|thumb|480px|Center the 3D ciew on the scene]]<br /> |}<br /> <br /> *The direction of the text is always from left to right on your screen. To adjust the relative direction of the model and your text, you can rotate the model before locate your text.<br /> <br /> {|<br /> |[[Image:Add3DText.png|thumb|Relative direction 1]]<br /> |[[Image:Add3DText_2.png|thumb|Relative direction 2]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|References}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Information for Developers}}<br /> For technical questions or problems, please use contacts in the introduction. &lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-footer}}<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}</div> Xiaojun https://www.slicer.org/w/index.php?title=File:Add3DText_2.png&diff=45502 File:Add3DText 2.png 2016-05-19T07:53:32Z <p>Xiaojun: </p> <hr /> <div></div> Xiaojun https://www.slicer.org/w/index.php?title=File:Add3DText_3.png&diff=45501 File:Add3DText 3.png 2016-05-19T07:48:45Z <p>Xiaojun: </p> <hr /> <div></div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/Add3DTextExtension&diff=45500 Documentation/Nightly/Extensions/Add3DTextExtension 2016-05-19T03:35:11Z <p>Xiaojun: editing version of Add3DText</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> <br /> <br /> Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DText|Add3DText]]&lt;br&gt;&lt;br&gt;<br /> <br /> <br /> Acknowledgments:&lt;br&gt;&lt;br&gt;<br /> <br /> [https://github.com/f-tang/Add3DText Code Resource] &lt;br&gt;&lt;br&gt;<br /> <br /> Author: Fenghe Tang, Xiaojun Chen (Shanghai Jiao Tong University) &lt;br&gt;<br /> Contact1: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Contact2: Fenghe Tang, &lt;email&gt;miketfh@sjtu.edu.cn&lt;/email&gt;&lt;br&gt;<br /> <br /> {|<br /> |[[Image:SJTU_Logo.png|thumb|Shanghai Jiao Tong University]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Module Description}}<br /> <br /> Add3DText is a Slicer Loadable module that allows users to emboss 3D text to the model(.stl format). &lt;br&gt;&lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Use Cases}}<br /> {|<br /> |[[Image:Add3DText_ScreenShot.png|thumb|720px|Screen shot]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Panels and their use}}<br /> <br /> {|<br /> |<br /> |[[Image:Add3DText_Panel.png|thumb|300px|Module UI]]<br /> |}<br /> <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Information for Developers}}<br /> For technical questions or problems, please use contacts in the introduction. &lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-footer}}<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}</div> Xiaojun https://www.slicer.org/w/index.php?title=File:Add3DText_Panel.png&diff=45499 File:Add3DText Panel.png 2016-05-19T03:30:51Z <p>Xiaojun: Xiaojun uploaded a new version of File:Add3DText Panel.png</p> <hr /> <div>Panel of Add3DText</div> Xiaojun https://www.slicer.org/w/index.php?title=File:Add3DText_Panel.png&diff=45498 File:Add3DText Panel.png 2016-05-19T03:25:54Z <p>Xiaojun: Panel of Add3DText</p> <hr /> <div>Panel of Add3DText</div> Xiaojun https://www.slicer.org/w/index.php?title=File:PorousScaffolds_ScreenShot.png&diff=45461 File:PorousScaffolds ScreenShot.png 2016-05-17T12:54:14Z <p>Xiaojun: Screen shot of the module PorousScaffolds.</p> <hr /> <div>Screen shot of the module PorousScaffolds.</div> Xiaojun https://www.slicer.org/w/index.php?title=File:Add3DText_ScreenShot.png&diff=45460 File:Add3DText ScreenShot.png 2016-05-17T12:53:31Z <p>Xiaojun: Screen shot of the module Add3DText.</p> <hr /> <div>Screen shot of the module Add3DText.</div> Xiaojun https://www.slicer.org/w/index.php?title=File:PorousScaffolds.png&diff=45459 File:PorousScaffolds.png 2016-05-17T12:44:38Z <p>Xiaojun: This is an icon for module PorousScaffolds.</p> <hr /> <div>This is an icon for module PorousScaffolds.</div> Xiaojun https://www.slicer.org/w/index.php?title=File:Add3DText.png&diff=45458 File:Add3DText.png 2016-05-17T12:43:26Z <p>Xiaojun: This is an icon for the module Add3DText.</p> <hr /> <div>This is an icon for the module Add3DText.</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/Add3DTextExtension&diff=45456 Documentation/Nightly/Extensions/Add3DTextExtension 2016-05-17T03:12:19Z <p>Xiaojun: Created page with &quot;&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt; &lt;!-- ---------------------------- --&gt; {{documentation/{{documentation/version}}/module-header}} &lt;!-- --------------------...&quot;</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> <br /> <br /> Extension: [[Documentation/{{documentation/version}}/Extensions/CleaverExtension|CleaverExtension]]&lt;br&gt;&lt;br&gt;<br /> Cleaver - A MultiMaterial Tetrahedral Meshing Library and Application&lt;br&gt;<br /> <br /> <br /> Acknowledgments:&lt;br&gt;&lt;br&gt;<br /> Cleaver is an Open Source software project that is principally funded through the SCI Institute's NIH/NIGMS CIBC Center. Please use the following acknowledgment and send us references to any publications, presentations, or successful funding applications that make use of NIH/NIGMS CIBC software or data sets. &lt;br&gt;<br /> &quot;This project was supported by the National Institute of General Medical Sciences of the National Institutes of Health under grant number P41GM103545.&quot;&lt;br&gt;&lt;br&gt;<br /> <br /> Developed at the [http://sci.utah.edu SCI Institute], [http://www.utah.edu University of Utah].&lt;br&gt;&lt;br&gt;<br /> [http://www.sci.utah.edu/cibc-software/cleaver-cibc.html Project Webpage] &lt;br&gt;&lt;br&gt;<br /> <br /> Author: Jonathan Bronson &lt;br&gt;<br /> Contributor1: Josh Levine (Co-Author)&lt;br&gt;<br /> Contributor2: Ross Whitaker (Co-Author)&lt;br&gt;<br /> Contributor3: Brig Bagley (Developer)&lt;br&gt;&lt;br&gt;<br /> Contact1: Jonathan Bronson, &lt;email&gt;bronson@sci.utah.edu&lt;/email&gt;&lt;br&gt;<br /> Contact2: Brig Bagley, &lt;email&gt;brig@sci.utah.edu&lt;/email&gt;&lt;br&gt;<br /> <br /> {|<br /> |[[Image:Sci.png|thumb|340px|SCI Institute]]<br /> |[[Image:CleaverCIBC.png|thumb|340px|Cleaver - CIBC]]<br /> |[[Image:uofu.jpg|thumb|340px|University of Utah]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Module Description}}<br /> <br /> CleaverExtension is a Slicer CLI Module that takes a set of NRRD Volumes and creates a set of tetrahedral meshes<br /> to import into the Slicer MRML.&lt;br&gt;&lt;br&gt;<br /> <br /> Based on the &quot;Lattice Cleaving&quot; algorithm (see References), this method is theoretically guaranteed to produce valid meshes with bounded dihedral angles, while still conforming to multimaterial material surfaces. Empirically these bounds have been shown to be significant.<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Use Cases}}<br /> {|<br /> |[[Image:FrogSlices.jpeg|thumb|540px|Input Frog image slices]]<br /> |[[Image:SlicerFrogOutput.png|thumb|375px|Frog Surface]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Panels and their use}}<br /> <br /> {|<br /> |<br /> |[[Image:SlicerGui.png|thumb|300px|Module UI]]<br /> |}<br /> *Input Volume 1-8 : Import up to 8 different volumes (NRRD) of the same dimension for Cleaver to mesh.<br /> *Output Model1-10 : Create up to 10 new models for Cleaver to write mesh data to. If none or too few are specified for the output, the console will provide the locations of the VTK mesh files and MRML scene file to load.<br /> *Use Padding : Often a good option to allow if material transitions exist at the volume boundaries.<br /> *Scaling : Scale the volume up or down for higher or lower resolution.<br /> *Alpha Short : The minimum distance on an edge cut after which Cleaver does not warp a vertex.<br /> *Alpha Long : The maximum distance on an edge cut after which Cleaver will create a sub-tetrahedron (Cleave the current tet). <br /> *Verbose : Whether the console is to output detailed information on the cleaving steps.<br /> *Output format: <br /> **VTKtet : The default option that creates VTK mesh files with the output volume tets.<br /> **VTKfac : These VTK files define meshes that signify transitions between materials.<br /> **tetgen : This output can be read into the TetGen Program.<br /> **scirun : This output can be read into SCI's SciRun program.<br /> **matlab : This output can be read into MATLAB.<br /> *Restore Defaults : Restores the default options.<br /> *AutoRun : Runs the program automatically when a change is made (does not work with CleaverExtension).<br /> *Apply : Runs the CLI with the above options within Slicer. See output in the console.<br /> *Cancel : Stop the current process.<br /> <br /> Cleaver operates on indicator functions (each defined by an input volume), and requires at least two. If you provide only a single function, Cleaver attempts to make an 'inverse' material for you automatically, by multiplying the field by -1 (therefore one material should have voxel value of X and the other material should have voxel value of -X).<br /> <br /> One other thing you might want to watch out for is you're using a very discontinuous input field. This is going to lead to stair-stepping artifacts on your output mesh. Providing smooth input functions will eliminate this problem.<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> *Both volumes and models are provided and created, respectively. When running in VTKtet output mode, the tet models are automatically loaded into Slicer.&lt;br&gt;<br /> {|<br /> |[[Image:Screenshot1.jpeg|thumb|700px|Example2]]<br /> |}&lt;br&gt;<br /> *Volumes are imported, then the program is run in VTKtet output mode. The output MRML is then loaded and clipped.&lt;br&gt;<br /> {|<br /> |[[Image:Screenshot2.jpeg|thumb|700px|Example3]]<br /> |}&lt;br&gt;<br /> *Volumes are imported, then the program is run in VTKfac output mode. The output MRML is then loaded and clipped.&lt;br&gt;<br /> {|<br /> |[[Image:Screenshot3.jpeg|thumb|700px|Example4]]<br /> |}&lt;br&gt;<br /> *An illustration of noting the output files of CleaverExtension when no models are provided. These can then be loaded into Slicer manually.&lt;br&gt;<br /> {|<br /> |[[Image:Screenshot4.jpeg|thumb|700px|Example1]]<br /> |}&lt;br&gt;<br /> <br /> Sample data: [[Media:CleaverSampleData.zip]]<br /> * Option 1 - Use Cleaver-MRHead-label.nrrd + Cleaver-MRHeader-label-inverse.nrrd.<br /> * Option 2a - Use Cleaver-MRHead-label-shifted.nrrd and let Cleaver infer the inverse.<br /> * Option 2b - Use Cleaver-MRHead-label-shifted-Gaussian.nrrd and let Cleaver infer the inverse. This is a Gaussian smoothed version of option 2a to show how a smooth function can prevent stair-stepping artefacts.<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|References}}<br /> * Bronson J., Levine, J., Whitaker R., &quot;Lattice Cleaving: Conforming Tetrahedral Meshes of Multimaterial Domains with Bounded Quality&quot;. Proceedings of the 21st International Meshing Roundtable (San Jose, CA, Oct 7-10, 2012).&lt;br&gt;<br /> <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Information for Developers}}<br /> For technical questions or problems, please use contacts in the introduction. &lt;br&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-footer}}<br /> [[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/ModuleExtensionListing/Extensions_by_category&diff=45455 Documentation/Nightly/ModuleExtensionListing/Extensions by category 2016-05-17T03:08:46Z <p>Xiaojun: /* Mesh Generation */</p> <hr /> <div>__NOTOC__<br /> * [[#Extensions_by_category|Extensions by category]]<br /> = Extensions by category =<br /> 24 categories:<br /> * [[#Extensions_by_category_Cardiac|Cardiac]]<br /> * [[#Extensions_by_category_Cardiac_MRI_toolkit|Cardiac MRI toolkit]]<br /> * [[#Extensions_by_category_Chest_Imaging_Platform|Chest Imaging Platform]]<br /> * [[#Extensions_by_category_Converters|Converters]]<br /> * [[#Extensions_by_category_Developer_Tools|Developer Tools]]<br /> * [[#Extensions_by_category_Diffusion|Diffusion]]<br /> * [[#Extensions_by_category_Editor_Effects|Editor Effects]]<br /> * [[#Extensions_by_category_Examples|Examples]]<br /> * [[#Extensions_by_category_Exporter|Exporter]]<br /> * [[#Extensions_by_category_Filtering|Filtering]]<br /> * [[#Extensions_by_category_IGT|IGT]]<br /> * [[#Extensions_by_category_Informatics|Informatics]]<br /> * [[#Extensions_by_category_Libraries|Libraries]]<br /> * [[#Extensions_by_category_Mesh_Generation|Mesh Generation]]<br /> * [[#Extensions_by_category_Microscopy|Microscopy]]<br /> * [[#Extensions_by_category_Nuclear_Medicine|Nuclear Medicine]]<br /> * [[#Extensions_by_category_Quantification|Quantification]]<br /> * [[#Extensions_by_category_Radiotherapy|Radiotherapy]]<br /> * [[#Extensions_by_category_Registration|Registration]]<br /> * [[#Extensions_by_category_Scoliosis|Scoliosis]]<br /> * [[#Extensions_by_category_Segmentation|Segmentation]]<br /> * [[#Extensions_by_category_Sequences|Sequences]]<br /> * [[#Extensions_by_category_Shape_Analysis|Shape Analysis]]<br /> * [[#Extensions_by_category_Tractography|Tractography]]<br /> * [[#Extensions_by_category_Training|Training]]<br /> * [[#Extensions_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]<br /> * [[#Extensions_by_category_Wizards|Wizards]]<br /> &lt;span id='Extensions_by_category_Cardiac'&gt;&lt;/span&gt;<br /> == Cardiac ==<br /> * [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]]<br /> * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]<br /> &lt;span id='Extensions_by_category_Cardiac_MRI_toolkit'&gt;&lt;/span&gt;<br /> == Cardiac MRI toolkit ==<br /> * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]<br /> &lt;span id='Extensions_by_category_Chest_Imaging_Platform'&gt;&lt;/span&gt;<br /> == Chest Imaging Platform ==<br /> * [http://www.chestimagingplatform.org Chest Imaging Platform]<br /> &lt;span id='Extensions_by_category_Converters'&gt;&lt;/span&gt;<br /> == Converters ==<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]<br /> &lt;span id='Extensions_by_category_Developer_Tools'&gt;&lt;/span&gt;<br /> == Developer Tools ==<br /> * [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]]<br /> * [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]]<br /> * [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]]<br /> * [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]]<br /> &lt;span id='Extensions_by_category_Diffusion'&gt;&lt;/span&gt;<br /> == Diffusion ==<br /> * [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|Resample DTIlog Euclidean]]<br /> &lt;span id='Extensions_by_category_Editor_Effects'&gt;&lt;/span&gt;<br /> == Editor Effects ==<br /> * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]<br /> &lt;span id='Extensions_by_category_Exporter'&gt;&lt;/span&gt;<br /> == Examples ==<br /> * [[Documentation/Nightly/Extensions/OpenCVExample|OpenCV Example]]<br /> &lt;span id='Extensions_by_category_Examples'&gt;&lt;/span&gt;<br /> == Exporter ==<br /> * [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]<br /> &lt;span id='Extensions_by_category_IGT'&gt;&lt;/span&gt;<br /> == Filtering ==<br /> * [[Documentation/Nightly/Extensions/pyLARSlicerExtension|pyLAR Slicer Extension]]<br /> &lt;span id='Extensions_by_category_Filtering'&gt;&lt;/span&gt;<br /> == IGT ==<br /> * [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]<br /> * [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]]<br /> * [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]]<br /> * [https://github.com/SlicerIGT/LumpNav Lump Nav]<br /> * [[Documentation/Nightly/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]<br /> * [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]]<br /> * [[Documentation/Nightly/Extensions/iGyne|i Gyne]]<br /> * [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]]<br /> &lt;span id='Extensions_by_category_Informatics'&gt;&lt;/span&gt;<br /> == Informatics ==<br /> * [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]<br /> * [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]<br /> * [[Documentation/Nightly/Extensions/Reporting|Reporting]]<br /> * [[Documentation/Nightly/Extensions/mpReview|mp Review]]<br /> * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]<br /> * [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]]<br /> &lt;span id='Extensions_by_category_Mesh_Generation'&gt;&lt;/span&gt;<br /> == Libraries ==<br /> * [[Documentation/Nightly/Extensions/SlicerOpenCV|SlicerOpenCV]]<br /> &lt;span id='Extensions_by_category_Libraries'&gt;&lt;/span&gt;<br /> == Mesh Generation ==<br /> * [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]<br /> * [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]]<br /> * [[Documentation/Nightly/Extensions/Add3DTextExtension|Add3DText Extension]]<br /> &lt;span id='Extensions_by_category_Microscopy'&gt;&lt;/span&gt;<br /> <br /> == Microscopy ==<br /> * [[Documentation/Nightly/Extensions/IASEM|IASEM]]<br /> &lt;span id='Extensions_by_category_Nuclear_Medicine'&gt;&lt;/span&gt;<br /> == Nuclear Medicine ==<br /> * [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis]<br /> &lt;span id='Extensions_by_category_Quantification'&gt;&lt;/span&gt;<br /> == Quantification ==<br /> * [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis]<br /> * [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]]<br /> * [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]]<br /> * [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]]<br /> * [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]]<br /> &lt;span id='Extensions_by_category_Radiotherapy'&gt;&lt;/span&gt;<br /> == Radiotherapy ==<br /> * [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]]<br /> * [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]<br /> &lt;span id='Extensions_by_category_Registration'&gt;&lt;/span&gt;<br /> == Registration ==<br /> * [[Documentation/Nightly/Extensions/CMFreg|CMFreg]]<br /> * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]<br /> &lt;span id='Extensions_by_category_Scoliosis'&gt;&lt;/span&gt;<br /> == Scoliosis ==<br /> * [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]]<br /> &lt;span id='Extensions_by_category_Segmentation'&gt;&lt;/span&gt;<br /> == Segmentation ==<br /> * [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Segment]<br /> * [http://www.nitrc.org/projects/abc ABC]<br /> * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]<br /> * [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]]<br /> * [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]<br /> * [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]]<br /> * [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]]<br /> * [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]]<br /> * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]<br /> * [https://github.com/Tomnl/Slicer-Wasp Wasp]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation]<br /> * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]<br /> * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]]<br /> &lt;span id='Extensions_by_category_Sequences'&gt;&lt;/span&gt;<br /> == Sequences ==<br /> * [[Documentation/Nightly/Extensions/Sequences|Sequences]]<br /> &lt;span id='Extensions_by_category_Shape_Analysis'&gt;&lt;/span&gt;<br /> == Shape Analysis ==<br /> * [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]<br /> * [[Documentation/Nightly/Extensions/Q3DC|Q3DC]]<br /> * [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]]<br /> * [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension]<br /> * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension]<br /> &lt;span id='Extensions_by_category_Tractography'&gt;&lt;/span&gt;<br /> == Tractography ==<br /> * [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]]<br /> * [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]]<br /> &lt;span id='Extensions_by_category_Training'&gt;&lt;/span&gt;<br /> == Training ==<br /> * [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]]<br /> &lt;span id='Extensions_by_category_Vascular_Modeling_Toolkit'&gt;&lt;/span&gt;<br /> == Vascular Modeling Toolkit ==<br /> * [http://slicer.vmtk.org/ VMTK]<br /> &lt;span id='Extensions_by_category_Wizards'&gt;&lt;/span&gt;<br /> == Wizards ==<br /> * [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]]<br /> __NOTOC__</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/4.3/Extensions/SurfaceMirror&diff=37428 Documentation/4.3/Extensions/SurfaceMirror 2014-03-02T13:08:56Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Xiaojun Chen,Jiaxi Luo, Ruqing Ye(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: &lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> SurfaceMirror module allows you to mirror a surface model with an arbitrary plane. It is designed especially for oral and maxillofacial surgery. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |}<br /> <br /> {|<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:SurfaceMirror_Tutorial.ppt SurfaceMirror]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/4.3/Extensions/ModelClip&diff=37427 Documentation/4.3/Extensions/ModelClip 2014-03-02T13:06:24Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Xiaojun Chen,Jun Lin,Qiqin Zhan(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/j-lin/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |[[Image:ModelClipScreenShot.png|thumb|650px|The screenshot of the ModelClip module]]<br /> |}<br /> <br /> {|<br /> |[[Image:ModelClipAnimatedGif.gif|The animated GIF of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/4.3/Extensions&diff=37426 Documentation/4.3/Extensions 2014-03-02T13:05:21Z <p>Xiaojun: /* Cat 2 */</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;noinclude&gt;<br /> __TOC__<br /> &lt;/noinclude&gt;= Extensions by Category =<br /> <br /> ==Cat 1==<br /> <br /> ==Cat 2==<br /> * [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br /> * [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)<br /> * [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Andras Lasso, Kevin Wang, Greg Sharp, Steve Pieper)<br /> ** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br /> ** [[Documentation/{{documentation/version}}/Modules/SubjectHierarchy|Subject hierarchy]]<br /> ** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br /> ** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br /> ** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br /> ** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br /> ** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br /> ** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br /> * [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)<br /> * [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br /> * [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br /> * [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)<br /> * [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)<br /> * [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br /> * [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br /> * [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br /> * [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br /> * [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br /> ** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br /> * [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br /> * [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br /> * [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br /> * [[Documentation/{{documentation/version}}/Extensions/PathPlanner|PathPlanner]] (Laurent Chauvin)<br /> * [[Documentation/{{documentation/version}}/Extensions/VisuaLine|VisuaLine]] (Laurent Chauvin)<br /> * [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br /> * [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br /> * [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Xiaojun Chen,Jun Lin,Qiqin Zhan)<br /> * [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Xiaojun Chen,Jiaxi Luo, Ruqing Ye)<br /> * [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)<br /> **[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)<br /> * [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Andinet Enquobahrie, Luis G. Torres)<br /> * [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)<br /> * [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)<br /> * [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)<br /> * [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)<br /> ** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]<br /> ** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]<br /> ** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]<br /> * [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)<br /> * [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)<br /> <br /> ==Cat 3==<br /> * [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation-&gt;TrainModel]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation-&gt;PredictLesions]] (Mark Scully)<br /> * [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)<br /> &lt;noinclude&gt;<br /> {{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br /> &lt;/noinclude&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/SurfaceMirror&diff=33533 Documentation/Nightly/Extensions/SurfaceMirror 2013-06-23T08:33:46Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jiaxi Luo, Ruqing Ye, Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: &lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> SurfaceMirror module allows you to mirror a surface model with an arbitrary plane. It is designed especially for oral and maxillofacial surgery. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |}<br /> <br /> {|<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:SurfaceMirror_Tutorial.ppt SurfaceMirror]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/SurfaceMirror&diff=33532 Documentation/Nightly/Extensions/SurfaceMirror 2013-06-23T08:26:44Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jiaxi Luo, Ruqing Ye, Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: &lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> SurfaceMirror module allows you to mirror a surface model with an arbitray plane. It is designed especially for oral and maxillofacial surgery. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |}<br /> <br /> {|<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:SurfaceMirror_Tutorial.ppt SurfaceMirror]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/SurfaceMirror&diff=33531 Documentation/Nightly/Extensions/SurfaceMirror 2013-06-23T08:22:28Z <p>Xiaojun: Created page with '&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt; &lt;!-- ---------------------------- --&gt; {{documentation/{{documentation/version}}/module-header}} &lt;!-- -----------------------…'</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jun Lin and Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/j-lin/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |[[Image:ModelClipScreenShot.png|thumb|650px|The screenshot of the ModelClip module]]<br /> |}<br /> <br /> {|<br /> |[[Image:ModelClipAnimatedGif.gif|The animated GIF of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions&diff=33530 Documentation/Nightly/Extensions 2013-06-23T08:21:48Z <p>Xiaojun: /* Cat 2 */</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;noinclude&gt;<br /> __TOC__<br /> &lt;/noinclude&gt;= Extensions by Category =<br /> <br /> ==Cat 1==<br /> <br /> ==Cat 2==<br /> * [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br /> * [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Andras Lasso, Kevin Wang, Steve Pieper)<br /> ** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br /> ** [[Documentation/{{documentation/version}}/Modules/PatientHierarchy|Patient hierarchy]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Deformation field visualizer]]<br /> ** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] [[image:UnderConstruction.png|tumb|10px]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br /> ** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br /> ** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br /> ** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br /> ** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br /> ** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br /> * [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br /> * [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br /> * [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br /> * [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br /> * [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br /> * [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br /> * [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br /> ** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br /> * [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br /> * [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br /> * [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br /> * [[Documentation/{{documentation/version}}/Extensions/PathPlanner|PathPlanner]] (Laurent Chauvin)<br /> * [[Documentation/{{documentation/version}}/Extensions/VisuaLine|VisuaLine]] (Laurent Chauvin)<br /> * [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br /> * [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br /> * [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)<br /> * [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)<br /> <br /> ==Cat 3==<br /> * [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation-&gt;TrainModel]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation-&gt;PredictLesions]] (Mark Scully)<br /> <br /> &lt;noinclude&gt;<br /> {{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br /> &lt;/noinclude&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions&diff=33529 Documentation/Nightly/Extensions 2013-06-23T08:21:20Z <p>Xiaojun: /* Cat 2 */</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;noinclude&gt;<br /> __TOC__<br /> &lt;/noinclude&gt;= Extensions by Category =<br /> <br /> ==Cat 1==<br /> <br /> ==Cat 2==<br /> * [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br /> * [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Andras Lasso, Kevin Wang, Steve Pieper)<br /> ** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br /> ** [[Documentation/{{documentation/version}}/Modules/PatientHierarchy|Patient hierarchy]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Deformation field visualizer]]<br /> ** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] [[image:UnderConstruction.png|tumb|10px]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br /> ** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br /> ** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br /> ** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br /> ** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br /> ** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br /> * [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br /> * [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br /> * [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br /> * [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br /> * [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br /> * [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br /> * [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br /> ** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br /> * [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br /> * [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br /> * [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br /> * [[Documentation/{{documentation/version}}/Extensions/PathPlanner|PathPlanner]] (Laurent Chauvin)<br /> * [[Documentation/{{documentation/version}}/Extensions/VisuaLine|VisuaLine]] (Laurent Chauvin)<br /> * [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br /> * [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br /> * [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)<br /> * [[Documentation/{{documentation/version}}/Extensions/ModelClip|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)<br /> <br /> ==Cat 3==<br /> * [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation-&gt;TrainModel]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation-&gt;PredictLesions]] (Mark Scully)<br /> <br /> &lt;noinclude&gt;<br /> {{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br /> &lt;/noinclude&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/4.2/Extensions&diff=33528 Documentation/4.2/Extensions 2013-06-23T02:36:12Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;noinclude&gt;{{:{{FULLPAGENAME}}/Description}}<br /> <br /> <br /> __TOC__<br /> &lt;/noinclude&gt;= Extensions by Category =<br /> <br /> ==Cat 1==<br /> <br /> ==Cat 2==<br /> * [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br /> * [[Documentation/{{documentation/version}}/Extensions/CARMA|CARMA]] (Alan Morris)[[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br /> ** [[Documentation/{{documentation/version}}/Extensions/LabelToDICOMSEGImport|LabelToDICOMSEGConverter]] <br /> ** [[Documentation/{{documentation/version}}/Extensions/DICOMSEGImport|DICOM SEG Import]] <br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Andras Lasso, Kevin Wang, Steve Pieper)<br /> ** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Deformation field visualizer]]<br /> ** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] [[image:UnderConstruction.png|tumb|10px]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Laurent Chauvin)<br /> * [[Documentation/{{documentation/version}}/Extensions/iGyne|IGyne]] (Guillaume Pernelle, Xiaojun Chen, Yi Gao, Jan Egger)<br /> * [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylaward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br /> * [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br /> * [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]] (Sunil Kumar, Dan Marcus, Steve Pieper)<br /> <br /> ==Cat 3==<br /> * [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation-&gt;TrainModel]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation-&gt;PredictLesions]] (Mark Scully)</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/4.2/Extensions&diff=33527 Documentation/4.2/Extensions 2013-06-23T02:35:24Z <p>Xiaojun: /* Cat 2 */</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;noinclude&gt;{{:{{FULLPAGENAME}}/Description}}<br /> <br /> <br /> __TOC__<br /> &lt;/noinclude&gt;= Extensions by Category =<br /> <br /> ==Cat 1==<br /> <br /> ==Cat 2==<br /> * [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br /> * [[Documentation/{{documentation/version}}/Extensions/CARMA|CARMA]] (Alan Morris)[[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br /> ** [[Documentation/{{documentation/version}}/Extensions/LabelToDICOMSEGImport|LabelToDICOMSEGConverter]] <br /> ** [[Documentation/{{documentation/version}}/Extensions/DICOMSEGImport|DICOM SEG Import]] <br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Andras Lasso, Kevin Wang, Steve Pieper)<br /> ** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Deformation field visualizer]]<br /> ** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] [[image:UnderConstruction.png|tumb|10px]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Laurent Chauvin)<br /> * [[Documentation/{{documentation/version}}/Extensions/iGyne|IGyne]] (Guillaume Pernelle,Xiaojun Chen, Yi Gao, Jan Egger)<br /> * [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylaward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br /> * [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br /> * [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]] (Sunil Kumar, Dan Marcus, Steve Pieper)<br /> <br /> ==Cat 3==<br /> * [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation-&gt;TrainModel]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation-&gt;PredictLesions]] (Mark Scully)</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/ModelClip&diff=33486 Documentation/Nightly/Extensions/ModelClip 2013-06-21T03:03:37Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jun Lin and Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/j-lin/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |[[Image:ModelClipScreenShot.png|thumb|650px|The screenshot of the ModelClip module]]<br /> |}<br /> <br /> {|<br /> |[[Image:ModelClipAnimatedGif.gif|The animated GIF of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/ModelClip&diff=33485 Documentation/Nightly/Extensions/ModelClip 2013-06-21T03:03:02Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jun Lin and Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/j-lin/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |[[Image:ModelClipScreenShot.png|thumb|800px|The screenshot of the ModelClip module]]<br /> |}<br /> <br /> {|<br /> |[[Image:ModelClipAnimatedGif.gif|The animated GIF of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/ModelClip&diff=33484 Documentation/Nightly/Extensions/ModelClip 2013-06-21T03:02:00Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jun Lin and Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/j-lin/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |[[Image:ModelClipScreenShot.png|thumb|600px|The screenshot of the ModelClip module]]<br /> |}<br /> <br /> {|<br /> |[[Image:ModelClipAnimatedGif.gif|The animated GIF of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/ModelClip&diff=33483 Documentation/Nightly/Extensions/ModelClip 2013-06-21T02:55:42Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jun Lin and Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/j-lin/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {<br /> |[[Image:ModelClipScreenShot.png|thumb|600px|The screenshot of the ModelClip module]]|}<br /> <br /> {|<br /> |[[Image:ModelClipAnimatedGif.gif|The animated GIF of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/ModelClip&diff=33482 Documentation/Nightly/Extensions/ModelClip 2013-06-21T02:54:33Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jun Lin and Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/j-lin/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |[[Image:ModelClipScreenShot.png|thumb|600px|The screenshot of the ModelClip module]]|}<br /> <br /> {|<br /> |[[Image:ModelClipAnimatedGif.gif|The animated GIF of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/ModelClip&diff=33481 Documentation/Nightly/Extensions/ModelClip 2013-06-21T02:52:34Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jun Lin and Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/j-lin/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |[[Image:ModelClipScreenShot.png|thumb|600px|The screenshot of the ModelClip module]]<br /> |[[Image:ModelClipAnimatedGif.gif|The animated GIF of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/ModelClip&diff=33480 Documentation/Nightly/Extensions/ModelClip 2013-06-21T02:51:02Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jun Lin and Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/j-lin/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |[[Image:ModelClipScreenShot.png|thumb|400px|The screenshot of the ModelClip module]]<br /> |[[Image:ModelClipAnimatedGif.gif|The animated GIF of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/ModelClip&diff=33479 Documentation/Nightly/Extensions/ModelClip 2013-06-21T02:49:51Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jun Lin and Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/j-lin/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |[[Image:ModelClipScreenShot.png|thumb|400px|The screenshot of the ModelClip module]]<br /> |[[Image:ModelClipAnimatedGif.gif|thumb|400px|The animated GIF of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=File:ModelClipAnimatedGif.gif&diff=33478 File:ModelClipAnimatedGif.gif 2013-06-21T02:46:35Z <p>Xiaojun: </p> <hr /> <div></div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/ModelClip&diff=33477 Documentation/Nightly/Extensions/ModelClip 2013-06-21T01:25:37Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jun Lin and Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/j-lin/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |[[Image:ModelClipScreenShot.png|thumb|400px|The screenshot of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/ModelClip&diff=33468 Documentation/Nightly/Extensions/ModelClip 2013-06-20T16:09:10Z <p>Xiaojun: </p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> &lt;!-- ---------------------------- --&gt;<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> {{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br /> {{documentation/{{documentation/version}}/module-introduction-row}}<br /> Authors: Jun Lin and Xiaojun Chen(Shanghai Jiao Tong University)&lt;br&gt;<br /> Contact: Xiaojun Chen, &lt;email&gt;xiaojunchen@163.com&lt;/email&gt;&lt;br&gt;<br /> Website: https://github.com/j-lin/ModelClip&lt;br&gt;<br /> License: [http://www.slicer.org/pages/LicenseText Slicer license]&lt;br&gt;<br /> <br /> &lt;gallery&gt;<br /> Image:SJTU_Logo.png|Shanghai Jiao Tong University(SJTU)<br /> File:Logo-splnew.jpg|Surgical Planning Lab(SPL)<br /> &lt;/gallery&gt;<br /> <br /> This project is supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).<br /> {{documentation/{{documentation/version}}/module-introduction-end}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> ModelClip module allows you to set the osteotomy trajectory with multiple planes, and clip the model with just one click. It is designed for osteotomy simulation. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> {|<br /> |[[Image:ModelClipScreenShot.png|thumb|400px|The screenshot of the ModelClip module]]<br /> |}<br /> <br /> {{documentation/{{documentation/version}}/module-section|Tutorials}}<br /> * Tutorial about [http://www.slicer.org/slicerWiki/index.php/File:ModelClip_Tutorial.ppt ModelClip]. <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|References}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Xiaojun