Slicer Wiki - User contributions [en]

Documentation/4.10/Extensions/exStone

2020-03-20T02:03:31Z

Qimo601 liu: update later

update later

Documentation/Nightly/Extensions/exStone

2018-07-23T03:09:57Z

Qimo601 liu:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|exStone]] 

Acknowledgements:

This project is supported by Sibet.

Get this extension: [https://github.com/qimo601/exStone Code Resource] 

'''Author:'''Zhaobang Liu, Shanshan Zhu ,Zheng Jian,Zhang Fan,Gong Lun(SIBET,SUZHOU INSTITUTE OF BIOMEDICAL ENGINEERING AND TECHNOLOGY CHINESE ACADEMY OF SCIENCES) 

'''Contributor:''' Yuan Li (GanSu Provincial Hospital) 
'''Contact:''' Zhaobang Liu, <email>qimo601@126.com</email> 
{|
|[[File:Sibet-logo.gif|Sibet]]
|}


{{documentation/{{documentation/version}}/module-section|Module Description}}

exStone is a Slicer Loadable module .
This extension is a software for the analysis of the density of urinary stones. The exStone can achieved the segmentation of urinary calculi from CT Image, and automaticly extract the slice's parameters in any angle of the urinary stones volume as well as perpendicular to the X/Y/Z axis. The CT maximum, minimum, average, average optical density and integral density of each slice of the stone were calculated. At finally,it can support export parameters to the Excel file. 


{{documentation/{{documentation/version}}/module-section|Use Cases}}

{|

you can see the animation effect.


{{documentation/{{documentation/version}}/module-section|Tutorials}}

*Panels:

{|
|[[File:Calculus module ui1.png|Calculus module ui]]
|}
*1. load CT Data: click the menu,File/Add data,load the ct image.
*2. input volume: Select a volume node which is the stone data after segmentation.
*3. defalut params: slice thickness / u water /material thick.
*4. "任意角度采集" button: click this button , it finished acquiring the params from any angle..
*5. look the tablewidget: the params "MAX/MIN/AVERAGE /AOD/IOD" will computer and show here.
*6. "save" button: save these params in excel file.
*7. "垂直X轴采集": click this button ,then repeat 5-6 steps.Cutting along X axis
*8. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Y axis
*9. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Z axis

*Before you click these acquire button, please first select the input volume combox.


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
For technical questions or problems, please use contacts in the introduction. 


{{documentation/{{documentation/version}}/module-footer}}

{{documentation/{{documentation/version}}/extension-footer}}

File:Calculus.png

2016-11-11T06:22:24Z

Qimo601 liu: extension icon

extension icon

Documentation/Nightly/Extensions/exStone

2016-11-11T01:29:14Z

Qimo601 liu:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|exStone]] 

Acknowledgements:

This project is supported by Sibet.

Get this extension: [https://github.com/qimo601/exStone Code Resource] 

'''Author:'''Zhaobang Liu, Shanshan Zhu ,Zheng Jian,Zhang Fan,Gong Lun(SIBET,SUZHOU INSTITUTE OF BIOMEDICAL ENGINEERING AND TECHNOLOGY CHINESE ACADEMY OF SCIENCES) 

'''Contributor:''' Yuan Li (GanSu Provincial Hospital) 
'''Contact:''' Zhaobang Liu, <email>qimo601@126.com</email> 
{|
|[[File:Sibet-logo.gif|Sibet]]
|}


{{documentation/{{documentation/version}}/module-section|Module Description}}

exStone is a Slicer Loadable module .
This extension is a software for the analysis of the density of urinary stones. The exStone can achieved the segmentation of urinary calculi from CT Image, and automaticly extract the slice's parameters in any angle of the urinary stones volume as well as perpendicular to the X/Y/Z axis. The CT maximum, minimum, average, average optical density and integral density of each slice of the stone were calculated. At finally,it can support export parameters to the Excel file. 


{{documentation/{{documentation/version}}/module-section|Use Cases}}

{|

you can see the animation effect.

{|
|[[File:Urinary calculi.png|frame|urinary stones]]
[[File:Extract parameters in any angle .gif|frame|Extract parameters in any angle]]
[[File:Extract parameters from axis.gif|frame|Extract parameters from axis]]
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}

*Panels:

{|
|[[File:Calculus module ui1.png|Calculus module ui]]
|}
*1. load CT Data: click the menu,File/Add data,load the ct image.
*2. input volume: Select a volume node which is the stone data after segmentation.
*3. defalut params: slice thickness / u water /material thick.
*4. "任意角度采集" button: click this button , it finished acquiring the params from any angle..
*5. look the tablewidget: the params "MAX/MIN/AVERAGE /AOD/IOD" will computer and show here.
*6. "save" button: save these params in excel file.
*7. "垂直X轴采集": click this button ,then repeat 5-6 steps.Cutting along X axis
*8. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Y axis
*9. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Z axis

*Before you click these acquire button, please first select the input volume combox.


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
For technical questions or problems, please use contacts in the introduction. 


{{documentation/{{documentation/version}}/module-footer}}

{{documentation/{{documentation/version}}/extension-footer}}

Documentation/Nightly/Extensions/exStone

2016-11-11T01:09:25Z

Qimo601 liu:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|exStone]] 

Acknowledgements:

This project is supported by Sibet.

Get this extension: [https://github.com/qimo601/exStone Code Resource] 

'''Author:'''Zhaobang Liu, Shanshan Zhu ,Zheng Jian,Zhang Fan,Gong Lun(SIBET,SUZHOU INSTITUTE OF BIOMEDICAL ENGINEERING AND TECHNOLOGY CHINESE ACADEMY OF SCIENCES) 

'''Contributor:''' Yuan Li (GanSu Provincial Hospital) 
'''Contact:''' Zhaobang Liu, <email>qimo601@126.com</email> 
{|
|[[File:Sibet-logo.gif|Sibet]]
|}


{{documentation/{{documentation/version}}/module-section|Module Description}}

exStone is a Slicer Loadable module .
This extension is a software for the analysis of the density of urinary stones. The exStone can achieved the segmentation of urinary calculi from CT Image, and automaticly extract the slice's parameters in any angle of the urinary stones volume as well as perpendicular to the X/Y/Z axis. The CT maximum, minimum, average, average optical density and integral density of each slice of the stone were calculated. At finally,it can support export parameters to the Excel file. 


{{documentation/{{documentation/version}}/module-section|Use Cases}}

{|

you can see the animation effect.

{|
|[[File:Urinary calculi.png|urinary stones]]
[[File:Extract parameters in any angle .gif|Extract parameters in any angle]]
[[File:Extract parameters from axis.gif|Extract parameters from axis]]
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}

*Panels:

{|
|[[File:Calculus module ui1.png|Calculus module ui]]
|}
*1. load CT Data: click the menu,File/Add data,load the ct image.
*2. input volume: Select a volume node which is the stone data after segmentation.
*3. defalut params: slice thickness / u water /material thick.
*4. "任意角度采集" button: click this button , it finished acquiring the params from any angle..
*5. look the tablewidget: the params "MAX/MIN/AVERAGE /AOD/IOD" will computer and show here.
*6. "save" button: save these params in excel file.
*7. "垂直X轴采集": click this button ,then repeat 5-6 steps.Cutting along X axis
*8. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Y axis
*9. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Z axis

*Before you click these acquire button, please first select the input volume combox.


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
For technical questions or problems, please use contacts in the introduction. 


{{documentation/{{documentation/version}}/module-footer}}

{{documentation/{{documentation/version}}/extension-footer}}

Documentation/Nightly/Extensions/exStone

2016-11-11T01:02:58Z

Qimo601 liu:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|exStone]] 

Acknowledgements:

This project is supported by Sibet.

Get this extension: [https://github.com/qimo601/exStone Code Resource] 

'''Author:'''Zhaobang Liu, Shanshan Zhu ,Zheng Jian,Zhang Fan,Gong Lun(SIBET,SUZHOU INSTITUTE OF BIOMEDICAL ENGINEERING AND TECHNOLOGY CHINESE ACADEMY OF SCIENCES) 

'''Contributor:''' Yuan Li (GanSu Provincial Hospital) 
'''Contact:''' Zhaobang Liu, <email>qimo601@126.com</email> 
{|
|[[File:Sibet-logo.gif|Sibet]]
|}


{{documentation/{{documentation/version}}/module-section|Module Description}}

exStone is a Slicer Loadable module .
This extension is a software for the analysis of the density of urinary stones. The exStone can achieved the segmentation of urinary calculi from CT Image, and automaticly extract the slice's parameters in any angle of the urinary stones volume as well as perpendicular to the X/Y/Z axis. The CT maximum, minimum, average, average optical density and integral density of each slice of the stone were calculated. At finally,it can support export parameters to the Excel file. 


{{documentation/{{documentation/version}}/module-section|Use Cases}}

{|
|[[File:Urinary calculi.png|urinary stones]]
[[File:ExtractOfAnyAngle.png|Extract parameters in any angle]]
[[File:ExtractParamsFromAxis.png|Extract parameters from axis]]
|}
{|

If you want to see the animation effect, please click on the following gif.
<gallery>
File:Urinary calculi.png|urinary stones
File:Extract parameters in any angle .gif|Extract parameters in any angle
File:Extract parameters from axis.gif|Extract parameters from axis

</gallery>

|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}

*Panels:

{|
|[[File:Calculus module ui1.png|Calculus module ui]]
|}
*1. load CT Data: click the menu,File/Add data,load the ct image.
*2. input volume: Select a volume node which is the stone data after segmentation.
*3. defalut params: slice thickness / u water /material thick.
*4. "任意角度采集" button: click this button , it finished acquiring the params from any angle..
*5. look the tablewidget: the params "MAX/MIN/AVERAGE /AOD/IOD" will computer and show here.
*6. "save" button: save these params in excel file.
*7. "垂直X轴采集": click this button ,then repeat 5-6 steps.Cutting along X axis
*8. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Y axis
*9. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Z axis

*Before you click these acquire button, please first select the input volume combox.


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
For technical questions or problems, please use contacts in the introduction. 


{{documentation/{{documentation/version}}/module-footer}}

{{documentation/{{documentation/version}}/extension-footer}}

Documentation/Nightly/Extensions/exStone

2016-11-11T01:01:48Z

Qimo601 liu:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|exStone]] 

Acknowledgements:

This project is supported by Sibet.

Get this extension: [https://github.com/qimo601/exStone Code Resource] 

'''Author:'''Zhaobang Liu, Shanshan Zhu ,Zheng Jian(SIBET,SUZHOU INSTITUTE OF BIOMEDICAL ENGINEERING AND TECHNOLOGY CHINESE ACADEMY OF SCIENCES) 

'''Contributor:''' Yuan Li (GanSu Provincial Hospital) 
'''Contact:''' Zhaobang Liu, <email>qimo601@126.com</email> 
{|
|[[File:Sibet-logo.gif|Sibet]]
|}


{{documentation/{{documentation/version}}/module-section|Module Description}}

exStone is a Slicer Loadable module .
This extension is a software for the analysis of the density of urinary stones. The exStone can achieved the segmentation of urinary calculi from CT Image, and automaticly extract the slice's parameters in any angle of the urinary stones volume as well as perpendicular to the X/Y/Z axis. The CT maximum, minimum, average, average optical density and integral density of each slice of the stone were calculated. At finally,it can support export parameters to the Excel file. 


{{documentation/{{documentation/version}}/module-section|Use Cases}}

{|
|[[File:Urinary calculi.png|urinary stones]]
[[File:ExtractOfAnyAngle.png|Extract parameters in any angle]]
[[File:ExtractParamsFromAxis.png|Extract parameters from axis]]
|}
{|

If you want to see the animation effect, please click on the following gif.
<gallery>
File:Urinary calculi.png|urinary stones
File:Extract parameters in any angle .gif|Extract parameters in any angle
File:Extract parameters from axis.gif|Extract parameters from axis

</gallery>

|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}

*Panels:

{|
|[[File:Calculus module ui1.png|Calculus module ui]]
|}
*1. load CT Data: click the menu,File/Add data,load the ct image.
*2. input volume: Select a volume node which is the stone data after segmentation.
*3. defalut params: slice thickness / u water /material thick.
*4. "任意角度采集" button: click this button , it finished acquiring the params from any angle..
*5. look the tablewidget: the params "MAX/MIN/AVERAGE /AOD/IOD" will computer and show here.
*6. "save" button: save these params in excel file.
*7. "垂直X轴采集": click this button ,then repeat 5-6 steps.Cutting along X axis
*8. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Y axis
*9. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Z axis

*Before you click these acquire button, please first select the input volume combox.


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
For technical questions or problems, please use contacts in the introduction. 


{{documentation/{{documentation/version}}/module-footer}}

{{documentation/{{documentation/version}}/extension-footer}}

Documentation/Nightly/Extensions/exStone

2016-11-10T09:08:13Z

Qimo601 liu:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|exStone]] 

Acknowledgements:

This project is supported by Sibet.

Get this extension: [https://github.com/qimo601/exStone Code Resource] 

'''Author:'''Zhaobang Liu, Shanshan Zhu ,Zheng Jian(SIBET,SUZHOU INSTITUTE OF BIOMEDICAL ENGINEERING AND TECHNOLOGY CHINESE ACADEMY OF SCIENCES) 

'''Contributor:''' Yuan Li (GanSu Provincial Hospital) 
'''Contact:''' Zhaobang Liu, <email>qimo601@126.com</email> 
{|
|[[File:Sibet-logo.gif|thumb|Sibet]]
|}


{{documentation/{{documentation/version}}/module-section|Module Description}}

exStone is a Slicer Loadable module .
This extension is a software for the analysis of the density of urinary stones. The exStone can achieved the segmentation of urinary calculi from CT Image, and automaticly extract the slice's parameters in any angle of the urinary stones volume as well as perpendicular to the X/Y/Z axis. The CT maximum, minimum, average, average optical density and integral density of each slice of the stone were calculated. At finally,it can support export parameters to the Excel file. 


{{documentation/{{documentation/version}}/module-section|Use Cases}}

{|
|[[File:Urinary calculi.png|urinary stones]]
[[File:ExtractOfAnyAngle.png|Extract parameters in any angle]]
[[File:ExtractParamsFromAxis.png|Extract parameters from axis]]
|}
{|

If you want to see the animation effect, please click on the following gif.
<gallery>
File:Urinary calculi.png|urinary stones
File:Extract parameters in any angle .gif|Extract parameters in any angle
File:Extract parameters from axis.gif|Extract parameters from axis

</gallery>

|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}

*Panels:

{|
|[[File:Calculus module ui1.png|Calculus module ui]]
|}
*1. load CT Data: click the menu,File/Add data,load the ct image.
*2. input volume: Select a volume node which is the stone data after segmentation.
*3. defalut params: slice thickness / u water /material thick.
*4. "任意角度采集" button: click this button , it finished acquiring the params from any angle..
*5. look the tablewidget: the params "MAX/MIN/AVERAGE /AOD/IOD" will computer and show here.
*6. "save" button: save these params in excel file.
*7. "垂直X轴采集": click this button ,then repeat 5-6 steps.Cutting along X axis
*8. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Y axis
*9. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Z axis

*Before you click these acquire button, please first select the input volume combox.


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
For technical questions or problems, please use contacts in the introduction. 


{{documentation/{{documentation/version}}/module-footer}}

{{documentation/{{documentation/version}}/extension-footer}}

File:ExtractParamsFromAxis.png

2016-11-10T09:00:41Z

Qimo601 liu:

Extract parameters from axis.png

File:ExtractOfAnyAngle.png

2016-11-10T08:59:35Z

Qimo601 liu:

Extract parameters in any angle.png

File:Sibet-logo.gif

2016-11-10T08:40:45Z

Qimo601 liu: Qimo601 liu uploaded a new version of File:Sibet-logo.gif

sibet-logo

Talk:Documentation/Nightly/Extensions/exStone

2016-11-10T08:35:49Z

Qimo601 liu:

There is currently no text in this page. You can [[Documentation/Nightly/Extensions/exStone|search for this page]] title in other pages, or search the related logs, but you do not have permission to create this page.

Talk:Documentation/Nightly/Extensions/exStone

2016-11-10T08:30:15Z

Qimo601 liu: Blanked the page

Documentation/Nightly/Extensions/exStone

2016-11-10T08:29:04Z

Qimo601 liu: Created page with "<noinclude>{{documentation/versioncheck}}</noinclude>  {{documentation/{{documentation/version}}/module-header}} <!-- --------------------..."

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|exStone]] 

Acknowledgements:

This project is supported by Sibet.

Get this extension: [https://github.com/qimo601/exStone Code Resource] 

'''Author:'''Zhaobang Liu, Shanshan Zhu ,Zheng Jian(SIBET,SUZHOU INSTITUTE OF BIOMEDICAL ENGINEERING AND TECHNOLOGY CHINESE ACADEMY OF SCIENCES) 

'''Contributor:''' Yuan Li (GanSu Provincial Hospital) 
'''Contact:''' Zhaobang Liu, <email>qimo601@126.com</email> 
{|
|[[File:Sibet-logo.gif|thumb|Sibet]]
|}


{{documentation/{{documentation/version}}/module-section|Module Description}}

exStone is a Slicer Loadable module .
This extension is a software for the analysis of the density of urinary stones. The exStone can achieved the segmentation of urinary calculi from CT Image, and automaticly extract the slice's parameters in any angle of the urinary stones volume as well as perpendicular to the X/Y/Z axis. The CT maximum, minimum, average, average optical density and integral density of each slice of the stone were calculated. At finally,it can support export parameters to the Excel file. 


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|

<gallery>
File:Urinary calculi.png|urinary stones
File:Extract parameters in any angle .gif|Extract parameters in any angle
File:Extract parameters from axis.gif|Extract parameters from axis

</gallery>

|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}

*Panels:

{|
|[[File:Calculus module ui1.png|Calculus module ui]]
|}
*1. load CT Data: click the menu,File/Add data,load the ct image.
*2. input volume: Select a volume node which is the stone data after segmentation.
*3. defalut params: slice thickness / u water /material thick.
*4. "任意角度采集" button: click this button , it finished acquiring the params from any angle..
*5. look the tablewidget: the params "MAX/MIN/AVERAGE /AOD/IOD" will computer and show here.
*6. "save" button: save these params in excel file.
*7. "垂直X轴采集": click this button ,then repeat 5-6 steps.Cutting along X axis
*8. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Y axis
*9. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Z axis

*Before you click these acquire button, please first select the input volume combox.


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
For technical questions or problems, please use contacts in the introduction. 


{{documentation/{{documentation/version}}/module-footer}}

{{documentation/{{documentation/version}}/extension-footer}}

Talk:Documentation/Nightly/Extensions/exStone

2016-11-10T08:27:28Z

Qimo601 liu:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|exStone]] 

Acknowledgements:

This project is supported by Sibet.

Get this extension: [https://github.com/qimo601/exStone Code Resource] 

'''Author:'''Zhaobang Liu, Shanshan Zhu ,Zheng Jian(SIBET,SUZHOU INSTITUTE OF BIOMEDICAL ENGINEERING AND TECHNOLOGY CHINESE ACADEMY OF SCIENCES) 

'''Contributor:''' Yuan Li (GanSu Provincial Hospital) 
'''Contact:''' Zhaobang Liu, <email>qimo601@126.com</email> 
{|
|[[File:Sibet-logo.gif|thumb|Sibet]]
|}


{{documentation/{{documentation/version}}/module-section|Module Description}}

exStone is a Slicer Loadable module .
This extension is a software for the analysis of the density of urinary stones. The exStone can achieved the segmentation of urinary calculi from CT Image, and automaticly extract the slice's parameters in any angle of the urinary stones volume as well as perpendicular to the X/Y/Z axis. The CT maximum, minimum, average, average optical density and integral density of each slice of the stone were calculated. At finally,it can support export parameters to the Excel file. 


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|

<gallery>
File:Urinary calculi.png|urinary stones
File:Extract parameters in any angle .gif|Extract parameters in any angle
File:Extract parameters from axis.gif|Extract parameters from axis

</gallery>

|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}

*Panels:

{|
|[[File:Calculus module ui1.png|Calculus module ui]]
|}
*1. load CT Data: click the menu,File/Add data,load the ct image.
*2. input volume: Select a volume node which is the stone data after segmentation.
*3. defalut params: slice thickness / u water /material thick.
*4. "任意角度采集" button: click this button , it finished acquiring the params from any angle..
*5. look the tablewidget: the params "MAX/MIN/AVERAGE /AOD/IOD" will computer and show here.
*6. "save" button: save these params in excel file.
*7. "垂直X轴采集": click this button ,then repeat 5-6 steps.Cutting along X axis
*8. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Y axis
*9. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Z axis

*Before you click these acquire button, please first select the input volume combox.


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
For technical questions or problems, please use contacts in the introduction. 


{{documentation/{{documentation/version}}/module-footer}}

{{documentation/{{documentation/version}}/extension-footer}}

Talk:Documentation/Nightly/Extensions/exStone

2016-11-10T08:11:11Z

Qimo601 liu:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|exStone]] 

Acknowledgements:

This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).

Get this extension: [https://github.com/qimo601/exStone Code Resource] 

'''Author:'''Zhaobang Liu, Shanshan Zhu ,Zheng Jian(SIBET,SUZHOU INSTITUTE OF BIOMEDICAL ENGINEERING AND TECHNOLOGY CHINESE ACADEMY OF SCIENCES) 

'''Contributor:''' Yuan Li (GanSu Provincial Hospital) 
'''Contact:''' Zhaobang Liu, <email>qimo601@126.com</email> 
{|
|[[File:Sibet-logo.gif|thumb|Sibet]]
|}


{{documentation/{{documentation/version}}/module-section|Module Description}}

exStone is a Slicer Loadable module .
This extension is a software for the analysis of the density of urinary stones. The exStone can achieved the segmentation of urinary calculi from CT Image, and automaticly extract the slice's parameters in any angle of the urinary stones volume as well as perpendicular to the X/Y/Z axis. The CT maximum, minimum, average, average optical density and integral density of each slice of the stone were calculated. At finally,it can support export parameters to the Excel file. 


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
<gallery>
File:Urinary calculi.png|urinary stones
File:Extract parameters in any angle .gif|Extract parameters in any angle
File:Extract parameters from axis.gif|Extract parameters from axis

</gallery>

|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}

*Panels:

{|
|[[File:Calculus module ui1.png|Calculus module ui]]
|}
*1. load CT Data: click the menu,File/Add data,load the ct image.
*2. input volume: Select a volume node which is the stone data after segmentation.
*3. defalut params: slice thickness / u water /material thick.
*4. "任意角度采集" button: click this button , it finished acquiring the params from any angle..
*5. look the tablewidget: the params "MAX/MIN/AVERAGE /AOD/IOD" will computer and show here.
*6. "save" button: save these params in excel file.
*7. "垂直X轴采集": click this button ,then repeat 5-6 steps.Cutting along X axis
*8. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Y axis
*9. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Z axis

*Before you click these acquire button, please first select the input volume combox.


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
For technical questions or problems, please use contacts in the introduction. 


{{documentation/{{documentation/version}}/module-footer}}

{{documentation/{{documentation/version}}/extension-footer}}

Talk:Documentation/Nightly/Extensions/exStone

2016-11-10T08:10:02Z

Qimo601 liu:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|exStone]] 

Acknowledgements:

This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).

Get this extension: [https://github.com/qimo601/exStone Code Resource] 

'''Author:'''Zhaobang Liu, Shanshan Zhu ,Zheng Jian(SIBET,SUZHOU INSTITUTE OF BIOMEDICAL ENGINEERING AND TECHNOLOGY CHINESE ACADEMY OF SCIENCES) 

'''Contributor:''' Yuan Li (GanSu Provincial Hospital) 
'''Contact:''' Zhaobang Liu, <email>qimo601@126.com</email> 
{|
|[[File:Sibet-logo.gif|thumb|Sibet]]
|}


{{documentation/{{documentation/version}}/module-section|Module Description}}

exStone is a Slicer Loadable module .
This extension is a software for the analysis of the density of urinary stones. The exStone can achieved the segmentation of urinary calculi from CT Image, and automaticly extract the slice's parameters in any angle of the urinary stones volume as well as perpendicular to the X/Y/Z axis. The CT maximum, minimum, average, average optical density and integral density of each slice of the stone were calculated. At finally,it can support export parameters to the Excel file. 


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
<gallery>
File:Urinary calculi.png| urinary stones|Module UI
File:Extract parameters in any angle .gif|Extract parameters in any angle
File:Extract parameters from axis.gif|Extract parameters from axis

</gallery>

|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}

*Panels:

{|
|[[File:Calculus module ui1.png|Calculus module ui]]
|}
*1. load CT Data: click the menu,File/Add data,load the ct image.
*2. input volume: Select a volume node which is the stone data after segmentation.
*3. defalut params: slice thickness / u water /material thick.
*4. "任意角度采集" button: click this button , it finished acquiring the params from any angle..
*5. look the tablewidget: the params "MAX/MIN/AVERAGE /AOD/IOD" will computer and show here.
*6. "save" button: save these params in excel file.
*7. "垂直X轴采集": click this button ,then repeat 5-6 steps.Cutting along X axis
*8. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Y axis
*9. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Z axis

*Before you click these acquire button, please first select the input volume combox.


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
For technical questions or problems, please use contacts in the introduction. 


{{documentation/{{documentation/version}}/module-footer}}

{{documentation/{{documentation/version}}/extension-footer}}

Talk:Documentation/Nightly/Extensions/exStone

2016-11-10T08:07:35Z

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

Extension: [[Documentation/{{documentation/version}}/Extensions/Add3DTextExtension|exStone]] 

Acknowledgements:

This project is partially supported by Natural Science Foundation of China (Grant No.51005156 and 81171429).

Get this extension: [https://github.com/qimo601/exStone Code Resource] 

'''Author:'''Zhaobang Liu, Shanshan Zhu ,Zheng Jian(SIBET,SUZHOU INSTITUTE OF BIOMEDICAL ENGINEERING AND TECHNOLOGY CHINESE ACADEMY OF SCIENCES) 

'''Contributor:''' Yuan Li (GanSu Provincial Hospital) 
'''Contact:''' Zhaobang Liu, <email>qimo601@126.com</email> 
{|
|[[File:Sibet-logo.gif|thumb|Sibet]]
|}


{{documentation/{{documentation/version}}/module-section|Module Description}}

exStone is a Slicer Loadable module .
This extension is a software for the analysis of the density of urinary stones. The exStone can achieved the segmentation of urinary calculi from CT Image, and automaticly extract the slice's parameters in any angle of the urinary stones volume as well as perpendicular to the X/Y/Z axis. The CT maximum, minimum, average, average optical density and integral density of each slice of the stone were calculated. At finally,it can support export parameters to the Excel file. 


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
<gallery>
[[File:Urinary calculi.png| urinary stones|thumb|360px|Module UI]]
File:Extract parameters in any angle .gif|Extract parameters in any angle
File:Extract parameters from axis.gif|Extract parameters from axis
File:Calculus module ui.png|Calculus module ui
</gallery>

|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}

*Panels:

{|
|[[File:Calculus module ui1.png|Calculus module ui]]
|}
*1. load CT Data: click the menu,File/Add data,load the ct image.
*2. input volume: Select a volume node which is the stone data after segmentation.
*3. defalut params: slice thickness / u water /material thick.
*4. "任意角度采集" button: click this button , it finished acquiring the params from any angle..
*5. look the tablewidget: the params "MAX/MIN/AVERAGE /AOD/IOD" will computer and show here.
*6. "save" button: save these params in excel file.
*7. "垂直X轴采集": click this button ,then repeat 5-6 steps.Cutting along X axis
*8. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Y axis
*9. "垂直Y轴采集": click this button ,then repeat 5-6 steps.Cutting along Z axis

*Before you click these acquire button, please first select the input volume combox.


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
For technical questions or problems, please use contacts in the introduction. 


{{documentation/{{documentation/version}}/module-footer}}

{{documentation/{{documentation/version}}/extension-footer}}

File:Calculus module ui1.png

2016-11-10T08:00:53Z

Qimo601 liu:

Calculus module ui

File:Calculus module ui.png

2016-11-10T07:38:01Z

Qimo601 liu:

calculus module ui

File:Extract parameters from axis.gif

2016-11-10T07:35:38Z

Qimo601 liu:

extract the slice's parameters from X/Y/Z axis

File:Extract parameters in any angle .gif

2016-11-10T07:33:56Z

Qimo601 liu:

automaticly extract the slice's parameters in any angle

File:Urinary calculi.png

2016-11-10T06:47:11Z

Qimo601 liu:

Urinary calculi

File:Sibet-logo.gif

2016-11-10T06:35:47Z

Qimo601 liu:

sibet-logo