https://www.slicer.org/w/api.php?action=feedcontributions&feedformat=atom&user=MjeulinlSlicer Wiki - User contributions [en]2026-05-11T02:29:43ZUser contributionsMediaWiki 1.33.0https://www.slicer.org/w/index.php?title=Documentation/4.0/Modules/Reformat&diff=24260Documentation/4.0/Modules/Reformat2012-02-01T20:11:17Z<p>Mjeulinl: </p>
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br><br />
Author: Michael Jeulin-Lagarrigue, Kitware Inc.<br><br />
Contact: Michael Jeulin-Lagarrigue, <email>michael.jeulinl@kitware.com</email><br><br />
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{{documentation/{{documentation/version}}/module-parametersdescription|xmlurl={{documentation/{{documentation/version}}/module-qtloadable-xmlurl|{{documentation/modulename}}|19165}} }}</div>Mjeulinlhttps://www.slicer.org/w/index.php?title=Documentation/4.0/Modules/Reformat&diff=24259Documentation/4.0/Modules/Reformat2012-02-01T18:40:00Z<p>Mjeulinl: </p>
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br><br />
Author: Michael Jeulin-Lagarrigue, Kitware Inc.<br><br />
Contact: Michael Jeulin-Lagarrigue, <email>michael.jeulinl@kitware.com</email><br><br />
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{{documentation/{{documentation/version}}/module-parametersdescription|xmlurl={{documentation/{{documentation/version}}/module-qtloadable-xmlurl|{{documentation/modulename}}|19162}} }}</div>Mjeulinlhttps://www.slicer.org/w/index.php?title=File:ReformatModule.png&diff=24258File:ReformatModule.png2012-02-01T18:38:53Z<p>Mjeulinl: Screenshot of the reformat module.</p>
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<div>Screenshot of the reformat module.</div>Mjeulinlhttps://www.slicer.org/w/index.php?title=Documentation/4.0/Modules/Reformat&diff=24257Documentation/4.0/Modules/Reformat2012-02-01T18:31:35Z<p>Mjeulinl: </p>
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br><br />
Author: Michael Jeulin-Lagarrigue, Kitware Inc.<br><br />
Contact: Michael Jeulin-Lagarrigue, <email>michael.jeulinl@kitware.com</email><br><br />
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{{documentation/{{documentation/version}}/module-parametersdescription|xmlurl={{documentation/{{documentation/version}}/module-qtloadable-xmlurl|{{documentation/modulename}}|19162}} }}</div>Mjeulinlhttps://www.slicer.org/w/index.php?title=Documentation/4.0/Modules/Reformat&diff=24256Documentation/4.0/Modules/Reformat2012-02-01T18:31:16Z<p>Mjeulinl: </p>
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br><br />
Author: Michael Jeulin-Lagarrigue, Kitware Inc.<br><br />
Contact: Michael Jeulin-Lagarrigue, <email>michael.jeulinl@kitware.com</email><br><br />
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br><br />
Author: Michael Jeulin-Lagarrigue, Kitware Inc.<br><br />
Contact: Michael Jeulin-Lagarrigue, <email>michael.jeulinl@kitware.com</email><br><br />
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br><br />
Author: Michael Jeulin-Lagarrigue, Kitware Inc.<br><br />
Contact: Michael Jeulin-Lagarrigue, <email>michael.jeulinl@kitware.com</email><br><br />
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br><br />
Author: Michael Jeulin-Lagarrigue, Kitware Inc.<br><br />
Contact: Michael Jeulin-Lagarrigue, <email>michael.jeulinl@kitware.com</email><br><br />
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br><br />
Author: Michael Jeulin-Lagarrigue, Kitware Inc.<br><br />
Contact: Michael Jeulin-Lagarrigue, <email>michael.jeulinl@kitware.com</email><br><br />
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<hr />
<div>__NOTOC__<br />
<br />
<!-- TODO: Create a template that will list all documentation links --><br />
<small><span class="versionlist">[[Documentation/4.0|4.0]] [[Documentation/3.6|3.6]] [[Documentation/3.5|3.5]] [[Documentation/3.4|3.4]] [[Documentation/3.2|3.2]] [[Documentation|ALL VERSIONS]]</span></small><br />
<br />
=Table of Content=<br />
{| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2"<br />
|-<br />
! width="33%"|<br />
! |<br />
! width="33%"|<br />
! |<br />
! width="33%"|<br />
|- <br />
|valign="top"|<br />
<br />
===Slicer Application===<br />
----<br />
*[[Documentation/{{documentation/version}}/SlicerApplication/MainApplicationGUI| Main Application GUI]]<br />
<br />
*[[Documentation/{{documentation/version}}/SlicerApplication/MouseandKeyboardShortcuts | Mouse Buttons, "Hot-keys" and Keyboard Shortcuts]] (Wendy Plesniak)<br />
<br />
*[[Documentation/{{documentation/version}}/SlicerApplication/HardwareConfiguration | Computer configurations]]<br />
*[[Documentation/{{documentation/version}}/SlicerApplication/LoadingData | Loading]] or [[Documentation/{{documentation/version}}/SlicerApplication/SavingData | Saving]] data and listing of [[Documentation/{{documentation/version}}/SlicerApplication/SupportedDataFormat | supported data formats]]. (Julien Finet)<br />
<!-- : scenes, DICOM, volumes, models, fiducials, transforms, etc. --><br />
<br />
*[[Documentation/{{documentation/version}}/SlicerApplication/StereoViewing | Setting up and using stereoscopic viewing]]<br />
<br />
===Mailing Lists===<br />
----<br />
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Mailing list for users]<br />
:[http://slicer-users.65878.n3.nabble.com/ Search] in archives on nabble.com<br />
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-devel Mailing list for developers]<br />
:[http://slicer-devel.65872.n3.nabble.com/ Search] in archives on nabble.com<br />
<br />
<!--<br />
*[[Modules:ExtensionsManagementWizard-Documentation-4.0| Extensions Management Wizard]] (xx)<br />
--><br />
<br />
|bgcolor="#CCCCCC"|<br />
|valign="top"|<br />
<br />
===Module Categories ===<br />
----<br />
* [[#Core Modules|Core Modules]]<br />
* [[#Wizards|Wizards]]<br />
* [[#Informatics|Informatics]]<br />
* [[#Registration|Registration]]<br />
* [[#Segmentation|Segmentation]]<br />
* [[#Quantification|Quantification]]<br />
* [[#Diffusion|Diffusion]]<br />
* [[#IGT|IGT]]<br />
* [[#Filtering|Filtering]]<br />
* [[#Surface Models|Surface Models]]<br />
* [[#Converters|Converters]]<br />
* [[#Endoscopy|Endoscopy]]<br />
* [[#Developer Tools|Developer Tools]]<br />
* [[#Legacy|Legacy]]<br />
|bgcolor="#CCCCCC"|<br />
|valign="top"|<br />
<br />
===Miscellaneous===<br />
----<br />
<!-- * [[Documentation/{{documentation/version}}/ImageGallery|Image gallery]] --><br />
<br />
* [[Slicer4:VisualBlog|Visual blog]]<br />
: Set of screenshots showing Slicer in action.<br />
<br />
<!--<br />
* [[Documents and links]]<br />
: Set of presentations made on Slicer and document talking about it.<br />
<br />
--><br />
* [[Documentation/4.0/Training|Training pages]]<br />
: Information on how to use Slicer {{documentation/version}}<br />
<br />
* [[Documentation/{{documentation/version}}/FAQ|FAQ]]<br />
: Set of common questions/answers<br />
<br />
* [[Documentation/{{documentation/version}}/ReleaseNotes|Release Notes]]<br />
: Platform specific issues and considerations<br />
<br />
===Developers Corner===<br />
----<br />
* [[Documentation/{{documentation/version}}/Developers | Information for Software Developers]]<br />
: Where to find the source code, how to compile ...<br />
|}<br />
<br />
=General Information=<br />
{|width="100%"<br />
|rowspan="3"|<br />
{{Infobox<br />
|name = 3D Slicer {{documentation/version}}<br />
|above = 3D Slicer<br />
|abovestyle = <br />
<br />
|image = [[File:3DSlicer4Logo-H-218X144.png|218px|alt=3D Slicer {{documentation/version}}]]<br />
|imagestyle = <br />
|headerstyle = background:#E7DCC3;<br />
|labelstyle = <br />
|datastyle = <br />
<br />
|header1 = Description<br />
|label1 = <br />
|data1 =<br />
|header2 =<br />
|label2 = <br />
|data2 = Research platform for the analysis and visualization of medical images, including image guided therapy.<br />
|header3 =<br />
|label3 = <br />
|data3 = Free and extensible open source package.<br />
|header4 =<br />
|label4 = Multi-platform<br />
|data4 = Linux, MacOSX, Windows<br />
|header5 =<br />
|label5 = Version<br />
|data5 = {{documentation/version}}<br />
|header6 =<br />
|label6 = License<br />
|data6 = [http://www.slicer.org/pages/LicenseText Contribution and Software License Agreement]<br />
}}<br />
|align="center"|<br />
[[{{collaborator|logo|slicer4}}|x350px]] <br />
|-<br />
|<br />
{{ombox<br />
|type=content<br />
|text=The {{documentation/version}} release of 3D Slicer contains significant changes both to the organization of the software and to the functionality. Please check the [[Documentation/{{documentation/version}}/Announcements | Announcement]] page for more details. The community contributing to Slicer {{documentation/version}} is acknowledged [http://www.slicer.org/pages/Acknowledgments here].<br />
}}<br />
|-<br />
|<br />
{{ombox | text = For information on how to obtain Slicer {{documentation/version}} please go to the [[Snapshots|Download Pages]]. }}<br />
|}<br />
<br />
=Modules by Category=<br />
==Core Modules==<br />
*[[Documentation/{{documentation/version}}/Modules/Annotations|Annotations]] (Nicole Aucoin) <br />
*[[Documentation/{{documentation/version}}/Modules/Colors|Colors]] (Nicole Aucoin) <br />
*[[Documentation/{{documentation/version}}/Modules/Data|Data]] (Julien Finet)<br />
*[[Documentation/{{documentation/version}}/Modules/DICOM|DICOM]] (Steve Pieper)<br />
*[[Documentation/{{documentation/version}}/Modules/Editor|Editor]] (Steve Pieper)<br />
*[[Documentation/{{documentation/version}}/Modules/Models|Models]] (Nicole Aucoin)<br />
*[[Documentation/{{documentation/version}}/Modules/SceneViews|SceneViews]] (Nicole Aucoin) <br />
*[[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]] (Alex Yarmarkovich) <br />
*[[Documentation/{{documentation/version}}/Modules/ViewControllers|View Controllers]] (Jim Miller) <br />
*[[Documentation/{{documentation/version}}/Modules/Volumes|Volumes]] (Steve Pieper)<br />
*[[Documentation/{{documentation/version}}/Modules/VolumeRendering|Volume Rendering]] (Julien Finet)<br />
*[[Documentation/{{documentation/version}}/Modules/SlicerWelcome|Welcome to Slicer]] (Wendy Plesniak)<br />
<br />
==Wizards==<br />
*[[Documentation/{{documentation/version}}/Modules/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br />
<br />
==Informatics==<br />
*[[Documentation/{{documentation/version}}/Modules/SampleData|Sample Data]] (Steve Pieper)<br />
<br />
==Registration==<br />
*[[Documentation/4.0/Modules/BRAINSFit|General Brainsfit Registration]] (Hans Johnson) [[image:UnderConstruction.png|tumb|10px]]<br />
*[[Documentation/4.0/Modules/BRAINSResample|Resample Image (BRAINS)]] (Hans Johnson) [[image:UnderConstruction.png|tumb|10px]]<br />
*Specialized<br />
**[[Documentation/4.0/Modules/ACPCTransform|ACPC Transform]] (Nicole Aucoin)<br />
**[[Documentation/4.0/Modules/BRAINSDemonWarp|Demon Registration (BRAINS)]] (Hans Johnson) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/TransformFromFiducials|Fiducial Registration (BRAINS)]] (Stephen Aylward) [[image:UnderConstruction.png|tumb|10px]]<br />
**Vector Demon Registration (Hans Johnson)<br />
**[[Documentation/4.0/Modules/Reformat|Reformat]] (Michael Jeulin-Lagarrigue)<br />
<br />
==Segmentation==<br />
*[[Documentation/4.0/Modules/EMSegment Easy|EMSegment Easy (no atlas)]] (Kilian Pohl) <br />
*[[Documentation/4.0/Modules/EMSegmenter|EMSegment (with atlas)]] (Kilian Pohl) <br />
*[[Documentation/4.0/Modules/Simple Region Growing|Simple Region Growing]] (Jim Miller, Harini Veeraraghavan) <br />
*Specialized<br />
**[[Documentation/4.0/Modules/EMSegment Command-line | EMSegment Command-line]] (Kilian Pohl)<br />
**[[Documentation/4.0/Modules/ForegroundMasking|Foreground Masking (BRAINS)]] (Hans Johnson) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/MeshContourSegmentation|Mesh Contour Segmentation]] (Allen Tannenbaum) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/RobustStatisticsSegmenter|Robust Statistics Segmentation]] (Yi Gao)<br />
<br />
==Quantification==<br />
*[[Documentation/{{documentation/version}}/Modules/DataProbe|Data Probe]] (Steve Pieper)<br />
*[[Documentation/4.0/Modules/LabelStatistics|Label Statistics]] (Steve Pieper)<br />
*[[Documentation/4.0/Modules/SUVComputation|SUV Computation]] (Nicole Aucoin)<br />
* Change quantification<br />
** [[Documentation/4.0/Modules/IntensityDifferenceMetric|Intensity Difference Metric]] (Andrey Fedorov)<br />
<br />
==Diffusion== <br />
*DWI to Full Brain Tractography (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]<br />
*Denoising<br />
**Joint Rician LMMSE Image Filter (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]<br />
**Rician LMMSE Image Filter (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]<br />
*Tractography<br />
**[[Documentation/4.0/Modules/TractographyDisplay|Tractography Display]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/TractographyFiducialSeeding|Tractography Fiducial Seeding]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/Seeding|Tractography Labelmap Seeding]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]<br />
*Utilities<br />
**[[Documentation/4.0/Modules/DiffusionTensorEstimation|Diffusion Tensor Estimation]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/DiffusionTensorMathematics|Diffusion Tensor Scalar Measurements]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/DiffusionWeightedMasking|Mask from Diffusion Weighted Images]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/ResampleDTI|Resample DTI Volume]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]]<br />
<br />
==IGT==<br />
*[[Documentation/4.0/Modules/OpenIGTLinkIF| OpenIGTLink IF]] (Junichi Tokuda) [[image:UnderConstruction.png|tumb|10px]]<br />
<br />
==Filtering==<br />
*[[Documentation/4.0/Modules/N4ITKBiasFieldCorrection | N4ITK Bias Field Correction]] (Andrey Fedorov)<br />
*[[Documentation/4.0/Modules/CheckerBoard|CheckerBoard]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
*[[Documentation/4.0/Modules/ExtractSkeleton|Extract Skeleton]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
*[[Documentation/4.0/Modules/HistogramMatching|Histogram Matching]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
*[[Documentation/4.0/Modules/ImageLabelCombine|Image Label Combine]] (Alex Yarmarkovich) [[image:UnderConstruction.png|tumb|10px]]<br />
*[[Documentation/4.0/Modules/ResampleScalarVectorDWIVolume|Resample Scalar/Vector/DWI Volume]] (Francois Budin) [[image:UnderConstruction.png|tumb|10px]]<br />
*[[Documentation/4.0/Modules/Threshold|Threshold Image]] (Nicole Aucoin) <br />
*[[Documentation/4.0/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
*Resample Tools<br />
**[[Documentation/4.0/Modules/ResampleVolume|Resample Volume]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
*Arithmetic <br />
**[[Documentation/4.0/Modules/Add| Add Images]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/Cast| Cast Image]] (Nicole Aucoin) <br />
**[[Documentation/4.0/Modules/Mask| Mask Image]] (Nicole Aucoin) <br />
**[[Documentation/4.0/Modules/Multiply| Multiply Images]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/Subtract| Subtract Images]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
*Denoising<br />
**[[Documentation/4.0/Modules/GradientAnisotropicDiffusion |Gradient Anisotropic Diffusion]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] <br />
**[[Documentation/4.0/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/GaussianBlurImageFilter|Gaussian Blur]] (Stephen Aylward) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/MedianImageFilter|Median Image Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
*Morphology<br />
**[[Documentation/4.0/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole]] (Jim Miller)<br />
**[[Documentation/4.0/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
<br />
==Surface Models==<br />
*[[Documentation/4.0/Modules/GrayscaleModelMaker| Grayscale Model Maker]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
*Label Map Smoothing<br />
*[[Documentation/4.0/Modules/MergeModels| Merge Models]] (Nicole Aucoin) <br />
*[[Documentation/4.0/Modules/ModelMaker| Model Maker]] (Nicole Aucoin) <br />
*[[Documentation/4.0/Modules/PolyDataToLabelmap| PolyData To LabelMap]] (Nicole Aucoin) <br />
*[[Documentation/4.0/Modules/ProbeVolumeWithModel| Probe Volume with Model (Paint)]] (Lauren O'Donnell) [[image:UnderConstruction.png|tumb|10px]]<br />
<br />
==Converters==<br />
*[[Documentation/4.0/Modules/ImageReadDicomWrite|Create Dicom Series]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
*[[Documentation/4.0/Modules/Crop Volume|Crop Volume]] (Andrey Fedorov)<br />
*[[Documentation/4.0/Modules/DicomToNrrdConverter|Dicom to Nrrd Converter]] (Jim Miller) <br />
*[[Documentation/4.0/Modules/OrientImage| Orient Images]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
<br />
==Endoscopy==<br />
*[[Documentation/4.0/Modules/Endoscopy|Endoscopy]] (Steve Pieper)<br />
<br />
==Developer Tools==<br />
*[[Documentation/4.0/Modules/Cameras|Cameras]] (Julien Finet) [[image:UnderConstruction.png|tumb|10px]]<br />
*[[Documentation/4.0/Modules/EventBroker|Event Broker]] (Julien Finet) [[image:UnderConstruction.png|tumb|10px]]<br />
*[[Documentation/4.0/Modules/ExecutionModelTour |Execution Model Tour]] (JC Fillion-Robin) [[image:UnderConstruction.png|tumb|10px]]<br />
*Module Template<br />
*Multiple Models Example<br />
*Performance Tests<br />
*Tractography<br />
<br />
==Legacy==<br />
*Converters<br />
**BSpline to Deformation Field<br />
*Diffusion<br />
**Denoising<br />
***Unbiased Non Local Means Filter for DWI<br />
*Filtering<br />
**[[Documentation/4.0/Modules/MRIBiasFieldCorrection|MRI Bias Field Correction]] (Sylvain Jaume) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/OtsuThresholdImageFilter|Otsu Threshold]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]]<br />
**Resample Scalar Volume<br />
*Registration<br />
**[[Documentation/4.0/Modules/RigidRegistration|Rigid Registration]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/AffineRegistration|Affine Registration]] (Daniel Blezek) [[image:UnderConstruction.png|tumb|10px]]<br />
*[[Documentation/4.0/Modules/BSplineDeformableRegistration|Nonrigid BSpline Registration]] [[image:UnderConstruction.png|tumb|10px]]<br />
**Nonrigid BSpline Registration<br />
**Expert Automated Registration<br />
**[[Documentation/4.0/Modules/LinearRegistration|Linear Registration]] [[image:UnderConstruction.png|tumb|10px]]<br />
**[[Documentation/4.0/Modules/TestGridTransformRegistration|Test Grid Transform Registration]] [[image:UnderConstruction.png|tumb|10px]]<br />
**Robust Multiresolution Affine Registration<br />
*Segmentation<br />
**[[Documentation/4.0/Modules/OtsuThresholdSegmentation|Otsu Threshold Segmentation]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]]<br />
<br />
=Extensions=<br />
<br />
'''Introduction'''<br />
<br />
* Slicer Extensions are the "on-ramp" to the Slicer "highway". slicer Extensions provide a voluntary mechanism for anybody, including third parties, to extend the functionality of 3d Slicer.<br />
* While the '''Slicer license''' is suggested for extensions, it is '''not required'''. Please review the documentation of the extension carefully as some extensions might have a "non-Slicer" license.<br />
* For a subset of extensions, you can use the extension wizard in Slicer to find their webpages and to install/uninstall individual extensions. <br />
* In case of problems with extensions, please talk directly to the developers of the extensions.<br />
* Information for developers can be found [[Slicer4:Extensions|here]]. See [[Module:EndUserDocumentationTemplate-4.0|here]] for the end-user documentation template.<br />
* In Slicer 4, all new modules will begin as "Immature Extensions". They will progress to the status of "Mature Extensions", when they meet all the criteria listed below. In order to become part of the main Slicer distribution a discussion with the Slicer core team will have to be initiated after reaching the mature extension status. While extensions can be made available under many licenses, the main Slicer distribution will contain ONLY code under the slicer license, with no known IP liabilities.<br />
<br />
==Collections==<br />
Collections are groups of extensions that can be downloaded in a single operation. You can think of them as the equivalent to a playlist.<br />
<br />
{| class="wikitable sortable labelpage labelpagetable" border="1"<br />
|-<br />
! id<br />
! Thumbnail<br />
! Name<br />
! Short Description<br />
! Maturity<br />
! Slicer License<br />
! Search terms<br />
! Contact Information<br />
|-<br />
| 1<br />
| [[Image:Slicervmtk logo.png|60px|lleft|Replace the image with your image, replace the generic documentation link with a link to your documentation|link=Module:EndUserDocumentationTemplate-4.0]] <br />
| MyCollection<br />
| This is a collection of extensions that will do something miraculous with your images<br />
| [[File:StableExtensionIcon.png|80px]]<br />
| [[File:SlicerLicenseIcon.png|80px]]<br />
| segmentation, level set<br />
| my-email at mit.edu<br />
|-<br />
|}<br />
<br />
<br />
<br />
<br />
==Table Of Extensions==<br />
{| class="wikitable sortable labelpage labelpagetable" border="1"<br />
|-<br />
! id<br />
! Thumbnail<br />
! Name<br />
! Short Description<br />
! Maturity<br />
! Slicer License<br />
! Search terms<br />
! Contact Information<br />
|-<br />
| 1<br />
| [[Image:SkullStripperSurface-3-6.png|60px|lleft|Replace the image with your image, replace the generic documentation linke with a link to your documentation|link=Module:EndUserDocumentationTemplate-4.0]] <br />
| MyExtension<br />
| This is an extension that will do something wonderful with your data<br />
| [[File:ExperimentalExtensionIcon.png|80px]]<br />
| [[File:NoSlicerLicenseIcon.png|80px]]<br />
| filter, anisotropic<br />
| my-email at gmail.com<br />
|-<br />
| 2<br />
| [[Image:Slicervmtk logo.png|60px|lleft|Replace the image with your image, replace the generic documentation linke with a link to your documentation|link=Module:EndUserDocumentationTemplate-4.0]] <br />
| MyExtension<br />
| This is an extension that will do something miraculous with your images<br />
| [[File:StableExtensionIcon.png|80px]]<br />
| [[File:SlicerLicenseIcon.png|80px]]<br />
| segmentation, level set<br />
| my-email at mit.edu<br />
|-<br />
|}<br />
<br />
<br />
<br />
'''Caption for the table of extensions'''<br />
<gallery heights="50px" perrow="4"><br />
Image:SlicerLicenseIcon.png| Distributed under the [http://www.slicer.org/pages/LicenseText Slicer License]<br />
Image:NoSlicerLicenseIcon.png| Distributed under a Non Slicer License<br />
Image:ExperimentalExtensionIcon.png|Work in progress (aka mess)<br>Use with care<br>Might not work all the time<br>Might not be available for all platforms<br />
Image:StableExtensionIcon.png|Stable <br>Full documentation <br>Works as advertised <br>Compiles on all supported platforms<br>Email support works<br />
</gallery></div>Mjeulinlhttps://www.slicer.org/w/index.php?title=Documentation/4.0/Modules/Reformat&diff=24189Documentation/4.0/Modules/Reformat2012-01-30T20:13:03Z<p>Mjeulinl: </p>
<hr />
<div><!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br><br />
Author: Michael Jeulin-Lagarrigue, Kitware Inc.<br><br />
Contact: Michael Jeulin-Lagarrigue, <email>michael.jeulinl@kitware.com</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|Image:Kitware-logo.jpg|Kitware, Inc.<br />
|Image:Logo-namic.jpg|NA-MIC<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
{{documentation/{{documentation/version}}/module-description|xmlurl={{documentation/{{documentation/version}}/module-qtloadable-xmlurl|{{documentation/modulename}}|19148}} }}</div>Mjeulinlhttps://www.slicer.org/w/index.php?title=Documentation/4.0/Modules/Reformat&diff=24183Documentation/4.0/Modules/Reformat2012-01-30T20:00:30Z<p>Mjeulinl: Created page with '<!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- ---------------------------- --> <!-- ---------------------------- --> {{doc…'</p>
<hr />
<div><!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br><br />
Author: Michael Jeulin-Lagarrigue, Kitware Inc.<br><br />
Contact: Michael Jeulin-Lagarrigue, <email>michael.jeulinl@kitware.com</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|Image:Kitware-logo.jpg|Kitware, Inc.<br />
|Image:Logo-namic.jpg|NA-MIC<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
{{documentation/{{documentation/version}}/module-parametersdescription|xmlurl={{documentation/{{documentation/version}}/module-qtloadable-xmlurl|{{documentation/modulename}}|19148}} }}</div>Mjeulinl