Slicer Wiki - User contributions [en]

Slicer3:Developers

2008-11-09T03:49:57Z

Melonakos:

__NOTOC__
= Slicer 3 Developer Page =
[[Image:Slicer3LogoHorizontalBeta.png|right]]
This page contains links to Slicer3 developer resources and events.

Click here for '''[[Slicer3:Events|Slicer3 Events]]'''

== Slicer 3 Architecture Overview ==
For more details on the slicer architecture see: [[media:Slicer 3-beta-2007-04-16.ppt | Architecture Slides]] (updated April, 2007).

<gallery caption="Highlights of the new architecture" widths="200px" perrow="4">
Image:Slicer3-Architecture.jpg
Image:Slicer3-Architecture-MRML.jpg
Image:Slicer3-Architecture-Layers.jpg
Image:ExecutionModelPlugins.png
</gallery>

== Quick Links for Developers ==
This section centrally locates many existing (and developing) wiki pages useful to Slicer3 developers. The content developed for the January 2007 AHM.

{|align="left" width="100%" border="1"
|-
|style="background:#ddf" width="60%"|'''Introduction to Slicer3'''
|style="background:#ddf" width="40%"|'''Key People'''
|-
||[[Media:SlicerHistoricalTimeline.ppt | Slicer3 Historical Timeline]]
||
|-
||[[Slicer3:Status_Summary | Status overview]] and [http://slicerl.bwh.harvard.edu/tmp/slicer3-PreAHMBeta%20Demo/slicer3-PreAHMBeta.htm Demo]
||
|-
||[[Media:GUIMap.png|Schematic of application interface & functionality]]
||
|-
||[[Media:SliceGUI.png|Schematic of slice GUI]]
||
|-
||[[Slicer3:Build_Instructions | Getting the software and troubleshooting]]
||
|-
||[[media:Slicer 3-beta-2007-01-10.ppt | Overall Architecture]] and [[Slicer3:Style|Slicer 3 Coding Style]]
||
|-
||[[Slicer3:Contributing_codes_to_Slicer3| Contributing codes to Slicer3]]
||
|-
|style="background:#ddf"|'''Two module types (Command line and Interactive)'''
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:Execution_Model_Documentation | Command line modules and how to implement one]]
||Jim and Bill [[media:Slicer3-ExecutionModelJune2006.ppt| Intro]]
|-
||[[Slicer3:How_to_implement_an_Interactive_Module_GUI | How to implement an interactive module]]
||wjp
|-
|style="background:#ddf"|'''MRML''' Medical Reality Modeling Language (MRML) is a language implemented as a type of XML document, with new tags defined to handle medical image data types such as volumes, models or coordinate transforms. [http://www.na-mic.org/Wiki/images/e/e3/Slicer3_MRML.ppt MRML Slides]
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:Data_Model#Creating_Custom_MRML_Node_Classes | Creating and using new MRML node types]]
||Alex
|-
||[[Slicer3:Data_Model#References_to_MRML_Nodes | Keeping references to MRML nodes ]]
||Alex
|-
||[[Slicer3:Data_Model#Undo/Redo_Mechanism | How undo/redo works, and how to enable it in your code]]
||Alex
|-
|style="background:#ddf"|'''GUI'''
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:StatelessGUI | Keeping the GUI stateless]]
||wjp
|-
||[[Slicer3:EventBindings | Adding keyboard shortcuts]]
||wjp
|-
||[[Slicer3:Human_Interface_and_Style_Guide_for_Developers | GUI style guidelines]]
||wjp
|-
||[[Slicer3:Usability#User-centered_design_practice_for_3DSlicer | User-centered design practice]]
||wjp
|-
||[[Slicer3:Slicer3Brand | 3DSlicer's logo and visual communication guidelines]]
||wjp
|-
||[[Slicer3:Execution_Model_Documentation#Adding_Module_Logos_to_Slicer3 | Incorporating your group's logo and attributions]]
||Jim
|-
||[[Slicer3:GUI_Experiments | Some experiments/advanced techniques for developing slicer3 interfaces]]
||Steve
|-
|style="background:#ddf"|'''Engineering'''
|style="background:#ddf"|'''Key People'''
|-
||Tips for avoiding memory leaks: Current Practice
||Steve
|-
||Tips for avoiding memory leaks: [[Slicer3:Memory Management | Suggested change to SmartPointers]]
||Jim
|-
||Generating tests
||Bill
|-
||[[Slicer3:Testing | Setting up Testing]]
||
|-
||[[Slicer3:Builds | Build Information]]
||
|-
||[[Slicer3:Launcher| The Launcher]]
||
|-
|style="background:#ddf"|'''Documenting your module''' As soon as the wiki page template is finalized, and the infrastructure is added to link to this wiki page from the "Help & Acknowledgment" panel in your module's GUI, we will ask developers to fill out a brief document describing your module and its use. Stay tuned for developments...
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:DocumentationWink|Documenting a module with wink]]
||
|-
|style="background:#ddf"|'''Integrate Slicer3 into a development environment'''
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3::Eclipse | Eclipse]]
||keilhack
|-
||[[Slicer3::MSVS200X | Microsoft Visual Studio 200x]]
||
|}

== Quick Links to Slicer3 Projects ==
Projects should correspond to the outstanding issues listed on the '''[[Slicer3:Status_Summary|Status Summary]]'''. Please refer to the '''[[Slicer3:FeatureRequests|Feature Requests]]''' from users when planning your implementations.

{|align="left" width="100%" border="1"
|-
|style="background:#ddf" width="60%"|'''Slicer3 Projects'''
|style="background:#ddf" width="40%"|'''Key People''' Bold names are responsible for an aspect of the project.
|-
||[[Slicer3:Architecture/Features|Architecture/Features]]
||'''Steve Pieper''', Group: Bill Lorensen, Ron Kikinis, Mike Halle, Noby Hata
|-
||[[Slicer3:Data_Model|Data Model / libMRML]]
||'''Alex''', Steve
|-
||[[Slicer3:Execution_Model|Execution Model / Command Line Modules]]
||'''Jim Miller''', Bill Lorensen
|-
||[[Slicer3:Interface_Design|Interface Design and Usability ]]
||'''Wendy Plesniak''', KWWidgets: Sebastien Barre, Yumin Yuan
|-
||[[Slicer3:Transition_of_Slicer2.x_Modules|Transition of Selected Slicer2.x Modules to Slicer3]]
||'''Nicole''', Katie, Wendy, Mathieu
|-
||[[Slicer3:DTMRI|DTMRI]]
||'''Alex''' with help from Diffusion Images: '''Raul''', Tractography: '''Lauren''' [http://lmi.bwh.harvard.edu LMI]
|-
||[[Slicer3:Editor|Editor]]
||'''Steve'''
|-
||[[Slicer3:ColorsFiducialsFreesurferModelmaker|Colors, Fiducials, FreeSurfer, ModelMaker]]
||'''Nicole'''
|-
||[[Slicer3:_Image_Guided_Therapy_%28IGT%29|IGT, Trackers]]
||'''Haiying'''
|-
||[[Slicer3:EM|EMSegment Interface]]
||'''Brad Davis'''
|-
||[[Slicer3:Slicer_Daemon|SlicerDaemon Interface (for unu, matlab)]]
||'''Steve Pieper'''
|-
||[[Slicer3:Build/Test/Deploy|Build/Test/Deploy System]]
||'''Andy''', Katie
|-
||[[Slicer3:Pipeline_Integration|Loni Pipeline Integration]]
||'''Jags'''
|-
||[[Slicer3:Batchmake_Integration|Batchmake/GRID Integration]]
||'''Julien Jomier'''
|-
||[[Slicer3:Registration|Registration Modules]]
||'''Jim Miller''', Steve Pieper
|-
||[http://www.na-mic.org/Wiki/index.php/ITK_Registration_Optimization Improvements to the registration framework]
||'''Stephen Aylward'''
|-
||[[Slicer3:Python|Python Integration]]
||'''Dan Blezek'''
|-
||[[Slicer3:Grid_Interface|Grid Integration]]
||'''Jeff Grethe''', Neil
|-
||[[Slicer3:Performance_Analysis|Slicer3:Performance Analysis]]
||'''Katie'''
|-
||[[Slicer3:ThreadingToolKit|Threading ToolKit]]
||'''Dan Blezek, James Miller, Stephen Aylward'''
|-
||[[Slicer3:Volume Rendering |Volume Rendering]]
||'''Andy'''
|-
||[[Slicer3:Volume Rendering With Cuda|Volume Rendering With CUDA]]
||'''Ben'''
|-
||[[Slicer3:XNAT |XNAT Interface]]
||'''Steve''', Wendy, Dan Marcus, Tim Olsen
|-
||[[Slicer3:LDDMM |LDDMM Interface]]
||'''Steve''', Anthony Kolasny
|-
||[[Slicer3:Web Presence |Web Presence]]
||'''Nicole Aucoin''', Zack Galbreath
|-
||[[Slicer3:Loadable Modules |Loadable Modules]]
||'''Alex Yarmarkovich''', Steve Pieper
|-
||[http://www.slicer.org/slicerWiki/index.php/Modules:Volumes:Diffusion_Editor-Documentation Diffusion Editor]
||'''Kerstin'''
|-
||[[Slicer3:TimeSeries and Multi-Volume Data | TimeSeries and Multi-Volume Data]]
||Steve Pieper, Daniel Blezek, Dominik Meier, Wendy Plesniak
|-
||[[Slicer3:Remote Data Handling | Remote Data Handling]]
||Steve Pieper, Nicole Aucoin, Wendy Plesniak
|-
||[[Slicer3:Module:QueryAtlas |Query Atlas]]
||'''Wendy Plesniak'''
|-
||[[Slicer3:MistSlicer | MistSlicer]]
||'''Yuichiro Hayashi''', Kensaku Mori, Nobuhiko Hata
|}

== Slicer 3 Quick links to the Source code ==
The Slicer3 svn repository:

svn co http://svn.slicer.org/Slicer3/trunk Slicer3

{|align="left" width="100%" border="1"
|-
|style="background:#ddf" width="60%"|'''General Slicer3 Quick Links'''
|style="background:#ddf" width="40%"|'''Debugging Slicer3 Quick Links'''
|-
||[http://www.na-mic.org/Wiki/index.php/Engineering:SandBox Instructions for NA-MIC svn]
||[http://www.cdash.org/CDash/index.php?project=Slicer3 Slicer3 Dashboard (As Of May 2, 2008)]
|-
||Use [http://viewvc.slicer.org ViewVC to browse the repository]
||[http://www.na-mic.org/Slicer3/Dashboard Slicer3 Dashboard (Before May 2, 2008)]
|-
||[[Slicer3:Build_Instructions|Slicer3 build instructions]]
||[http://na-mic.org/Mantis/main_page.php Slicer Bug Tracker]
|-
||[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Doxygen documentation for Slicer3].
||
|-
||The [[Slicer3:VisualBlog|Slicer3 VisualBlog]] shows screenshots of slicer developments.
||
|-
||Developers should follow the [[Slicer3:Style|Slicer 3 Coding Style]].
||
|}

Discussion of Slicer3 takes place on the slicer-devel at massmail.spl.harvard.edu list. To join developer's mailing list, send a request to: slicer-devel-request at massmail.spl.harvard.edu with the keyword '''''subscribe''''' as the subject. Or access the [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-devel slicer-devel archives and web administration interface].

== Design Information ==
*May 23, 2006: [http://www.na-mic.org/Wiki/index.php/Algorithms:Core1Visit_May06 Algorithm Core workshop.]
*April 3, 2006: [[Media:Slicer_3-alpha-2006-04-03.ppt| Slicer 3 alpha]] technical powerpoint presentation.

Slicer3:Developers

2008-11-09T03:44:20Z

Melonakos:

__NOTOC__
= Slicer 3 Developer Page =
[[Image:Slicer3LogoHorizontalBeta.png|right]]
This page contains links to Slicer3 developer resources and events.

Click here for '''[[Slicer3:Events|Slicer3 Events]]'''

== Slicer 3 Architecture Overview ==
For more details on the slicer architecture see: [[media:Slicer 3-beta-2007-04-16.ppt | Architecture Slides]] (updated April, 2007).

<gallery caption="Highlights of the new architecture" widths="200px" perrow="4">
Image:Slicer3-Architecture.jpg
Image:Slicer3-Architecture-MRML.jpg
Image:Slicer3-Architecture-Layers.jpg
Image:ExecutionModelPlugins.png
</gallery>

== Quick Links for Developers ==
This section centrally locates many existing (and developing) wiki pages useful to Slicer3 developers. The content developed for the January 2007 AHM.

{|align="left"
|-
|style="background:#ddf" width="60%"|'''Introduction to Slicer3'''
|style="background:#ddf" width="40%"|'''Key People'''
|-
||[[Media:SlicerHistoricalTimeline.ppt | Slicer3 Historical Timeline]]
||
|-
||[[Slicer3:Status_Summary | Status overview]] and [http://slicerl.bwh.harvard.edu/tmp/slicer3-PreAHMBeta%20Demo/slicer3-PreAHMBeta.htm Demo]
||
|-
||[[Media:GUIMap.png|Schematic of application interface & functionality]]
||
|-
||[[Media:SliceGUI.png|Schematic of slice GUI]]
||
|-
||[[Slicer3:Build_Instructions | Getting the software and troubleshooting]]
||
|-
||[[media:Slicer 3-beta-2007-01-10.ppt | Overall Architecture]] and [[Slicer3:Style|Slicer 3 Coding Style]]
||
|-
||[[Slicer3:Contributing_codes_to_Slicer3| Contributing codes to Slicer3]]
||
|-
|style="background:#ddf"|'''Two module types (Command line and Interactive)'''
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:Execution_Model_Documentation | Command line modules and how to implement one]]
||Jim and Bill [[media:Slicer3-ExecutionModelJune2006.ppt| Intro]]
|-
||[[Slicer3:How_to_implement_an_Interactive_Module_GUI | How to implement an interactive module]]
||wjp
|-
|style="background:#ddf"|'''MRML''' Medical Reality Modeling Language (MRML) is a language implemented as a type of XML document, with new tags defined to handle medical image data types such as volumes, models or coordinate transforms. [http://www.na-mic.org/Wiki/images/e/e3/Slicer3_MRML.ppt MRML Slides]
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:Data_Model#Creating_Custom_MRML_Node_Classes | Creating and using new MRML node types]]
||Alex
|-
||[[Slicer3:Data_Model#References_to_MRML_Nodes | Keeping references to MRML nodes ]]
||Alex
|-
||[[Slicer3:Data_Model#Undo/Redo_Mechanism | How undo/redo works, and how to enable it in your code]]
||Alex
|-
|style="background:#ddf"|'''GUI'''
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:StatelessGUI | Keeping the GUI stateless]]
||wjp
|-
||[[Slicer3:EventBindings | Adding keyboard shortcuts]]
||wjp
|-
||[[Slicer3:Human_Interface_and_Style_Guide_for_Developers | GUI style guidelines]]
||wjp
|-
||[[Slicer3:Usability#User-centered_design_practice_for_3DSlicer | User-centered design practice]]
||wjp
|-
||[[Slicer3:Slicer3Brand | 3DSlicer's logo and visual communication guidelines]]
||wjp
|-
||[[Slicer3:Execution_Model_Documentation#Adding_Module_Logos_to_Slicer3 | Incorporating your group's logo and attributions]]
||Jim
|-
||[[Slicer3:GUI_Experiments | Some experiments/advanced techniques for developing slicer3 interfaces]]
||Steve
|-
|style="background:#ddf"|'''Engineering'''
|style="background:#ddf"|'''Key People'''
|-
||Tips for avoiding memory leaks: Current Practice
||Steve
|-
||Tips for avoiding memory leaks: [[Slicer3:Memory Management | Suggested change to SmartPointers]]
||Jim
|-
||Generating tests
||Bill
|-
||[[Slicer3:Testing | Setting up Testing]]
||
|-
||[[Slicer3:Builds | Build Information]]
||
|-
||[[Slicer3:Launcher| The Launcher]]
||
|-
|style="background:#ddf"|'''Documenting your module''' As soon as the wiki page template is finalized, and the infrastructure is added to link to this wiki page from the "Help & Acknowledgment" panel in your module's GUI, we will ask developers to fill out a brief document describing your module and its use. Stay tuned for developments...
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:DocumentationWink|Documenting a module with wink]]
||
|-
|style="background:#ddf"|'''Integrate Slicer3 into a development environment'''
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3::Eclipse | Eclipse]]
||keilhack
|-
||[[Slicer3::MSVS200X | Microsoft Visual Studio 200x]]
||
|}

== Quick Links to Slicer3 Projects ==
Projects should correspond to the outstanding issues listed on the '''[[Slicer3:Status_Summary|Status Summary]]'''. Please refer to the '''[[Slicer3:FeatureRequests|Feature Requests]]''' from users when planning your implementations.

{|align="left"
|-
|style="background:#ddf" width="60%"|'''Slicer3 Projects'''
|style="background:#ddf" width="40%"|'''Key People''' Bold names are responsible for an aspect of the project.
|-
||[[Slicer3:Architecture/Features|Architecture/Features]]
||'''Steve Pieper''', Group: Bill Lorensen, Ron Kikinis, Mike Halle, Noby Hata
|-
||[[Slicer3:Data_Model|Data Model / libMRML]]
||'''Alex''', Steve
|-
||[[Slicer3:Execution_Model|Execution Model / Command Line Modules]]
||'''Jim Miller''', Bill Lorensen
|-
||[[Slicer3:Interface_Design|Interface Design and Usability ]]
||'''Wendy Plesniak''', KWWidgets: Sebastien Barre, Yumin Yuan
|-
||[[Slicer3:Transition_of_Slicer2.x_Modules|Transition of Selected Slicer2.x Modules to Slicer3]]
||'''Nicole''', Katie, Wendy, Mathieu
|-
||[[Slicer3:DTMRI|DTMRI]]
||'''Alex''' with help from Diffusion Images: '''Raul''', Tractography: '''Lauren''' [http://lmi.bwh.harvard.edu LMI]
|-
||[[Slicer3:Editor|Editor]]
||'''Steve'''
|-
||[[Slicer3:ColorsFiducialsFreesurferModelmaker|Colors, Fiducials, FreeSurfer, ModelMaker]]
||'''Nicole'''
|-
||[[Slicer3:_Image_Guided_Therapy_%28IGT%29|IGT, Trackers]]
||'''Haiying'''
|-
||[[Slicer3:EM|EMSegment Interface]]
||'''Brad Davis'''
|-
||[[Slicer3:Slicer_Daemon|SlicerDaemon Interface (for unu, matlab)]]
||'''Steve Pieper'''
|-
||[[Slicer3:Build/Test/Deploy|Build/Test/Deploy System]]
||'''Andy''', Katie
|-
||[[Slicer3:Pipeline_Integration|Loni Pipeline Integration]]
||'''Jags'''
|-
||[[Slicer3:Batchmake_Integration|Batchmake/GRID Integration]]
||'''Julien Jomier'''
|-
||[[Slicer3:Registration|Registration Modules]]
||'''Jim Miller''', Steve Pieper
|-
||[http://www.na-mic.org/Wiki/index.php/ITK_Registration_Optimization Improvements to the registration framework]
||'''Stephen Aylward'''
|-
||[[Slicer3:Python|Python Integration]]
||'''Dan Blezek'''
|-
||[[Slicer3:Grid_Interface|Grid Integration]]
||'''Jeff Grethe''', Neil
|-
||[[Slicer3:Performance_Analysis|Slicer3:Performance Analysis]]
||'''Katie'''
|-
||[[Slicer3:ThreadingToolKit|Threading ToolKit]]
||'''Dan Blezek, James Miller, Stephen Aylward'''
|-
||[[Slicer3:Volume Rendering |Volume Rendering]]
||'''Andy'''
|-
||[[Slicer3:Volume Rendering With Cuda|Volume Rendering With CUDA]]
||'''Ben'''
|-
||[[Slicer3:XNAT |XNAT Interface]]
||'''Steve''', Wendy, Dan Marcus, Tim Olsen
|-
||[[Slicer3:LDDMM |LDDMM Interface]]
||'''Steve''', Anthony Kolasny
|-
||[[Slicer3:Web Presence |Web Presence]]
||'''Nicole Aucoin''', Zack Galbreath
|-
||[[Slicer3:Loadable Modules |Loadable Modules]]
||'''Alex Yarmarkovich''', Steve Pieper
|-
||[http://www.slicer.org/slicerWiki/index.php/Modules:Volumes:Diffusion_Editor-Documentation Diffusion Editor]
||'''Kerstin'''
|-
||[[Slicer3:TimeSeries and Multi-Volume Data | TimeSeries and Multi-Volume Data]]
||Steve Pieper, Daniel Blezek, Dominik Meier, Wendy Plesniak
|-
||[[Slicer3:Remote Data Handling | Remote Data Handling]]
||Steve Pieper, Nicole Aucoin, Wendy Plesniak
|-
||[[Slicer3:Module:QueryAtlas |Query Atlas]]
||'''Wendy Plesniak'''
|-
||[[Slicer3:MistSlicer | MistSlicer]]
||'''Yuichiro Hayashi''', Kensaku Mori, Nobuhiko Hata
|}

== Slicer 3 Quick links to the Source code ==
The Slicer3 svn repository:

svn co http://svn.slicer.org/Slicer3/trunk Slicer3

{|align="left"
|-
|style="background:#ddf" width="60%"|'''General Slicer3 Quick Links'''
|style="background:#ddf" width="40%"|'''Debugging Slicer3 Quick Links'''
|-
||[http://www.na-mic.org/Wiki/index.php/Engineering:SandBox Instructions for NA-MIC svn]
||[http://www.cdash.org/CDash/index.php?project=Slicer3 Slicer3 Dashboard (As Of May 2, 2008)]
|-
||Use [http://viewvc.slicer.org ViewVC to browse the repository]
||[http://www.na-mic.org/Slicer3/Dashboard Slicer3 Dashboard (Before May 2, 2008)]
|-
||[[Slicer3:Build_Instructions|Slicer3 build instructions]]
||[http://na-mic.org/Mantis/main_page.php Slicer Bug Tracker]
|-
||[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Doxygen documentation for Slicer3].
||
|-
||The [[Slicer3:VisualBlog|Slicer3 VisualBlog]] shows screenshots of slicer developments.
||
|-
||Developers should follow the [[Slicer3:Style|Slicer 3 Coding Style]].
||
|}

Discussion of Slicer3 takes place on the slicer-devel at massmail.spl.harvard.edu list. To join developer's mailing list, send a request to: slicer-devel-request at massmail.spl.harvard.edu with the keyword '''''subscribe''''' as the subject. Or access the [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-devel slicer-devel archives and web administration interface].

== Design Information ==
*May 23, 2006: [http://www.na-mic.org/Wiki/index.php/Algorithms:Core1Visit_May06 Algorithm Core workshop.]
*April 3, 2006: [[Media:Slicer_3-alpha-2006-04-03.ppt| Slicer 3 alpha]] technical powerpoint presentation.

Slicer3:Developers

2008-11-09T03:37:37Z

Melonakos:

__NOTOC__
= Slicer 3 Developer Page =
[[Image:Slicer3LogoHorizontalBeta.png|right]]
This page contains links to Slicer3 developer resources and events.

Click here for '''[[Slicer3:Events|Slicer3 Events]]'''

== Slicer 3 Architecture Overview ==
For more details on the slicer architecture see: [[media:Slicer 3-beta-2007-04-16.ppt | Architecture Slides]] (updated April, 2007).

<gallery caption="Highlights of the new architecture" widths="200px" perrow="4">
Image:Slicer3-Architecture.jpg
Image:Slicer3-Architecture-MRML.jpg
Image:Slicer3-Architecture-Layers.jpg
Image:ExecutionModelPlugins.png
</gallery>

== Quick Links for Developers ==
This section centrally locates many existing (and developing) wiki pages useful to Slicer3 developers. The content developed for the January 2007 AHM.

{|align="left"
|-
|style="background:#ddf" width="60%"|'''Introduction to Slicer3'''
|style="background:#ddf" width="40%"|'''Key People'''
|-
||[[Media:SlicerHistoricalTimeline.ppt | Slicer3 Historical Timeline]]
||
|-
||[[Slicer3:Status_Summary | Status overview]] and [http://slicerl.bwh.harvard.edu/tmp/slicer3-PreAHMBeta%20Demo/slicer3-PreAHMBeta.htm Demo]
||
|-
||[[Media:GUIMap.png|Schematic of application interface & functionality]]
||
|-
||[[Media:SliceGUI.png|Schematic of slice GUI]]
||
|-
||[[Slicer3:Build_Instructions | Getting the software and troubleshooting]]
||
|-
||[[media:Slicer 3-beta-2007-01-10.ppt | Overall Architecture]] and [[Slicer3:Style|Slicer 3 Coding Style]]
||
|-
||[[Slicer3:Contributing_codes_to_Slicer3| Contributing codes to Slicer3]]
||
|-
|style="background:#ddf"|'''Two module types (Command line and Interactive)'''
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:Execution_Model_Documentation | Command line modules and how to implement one]]
||Jim and Bill [[media:Slicer3-ExecutionModelJune2006.ppt| Intro]]
|-
||[[Slicer3:How_to_implement_an_Interactive_Module_GUI | How to implement an interactive module]]
||wjp
|-
|style="background:#ddf"|'''MRML''' Medical Reality Modeling Language (MRML) is a language implemented as a type of XML document, with new tags defined to handle medical image data types such as volumes, models or coordinate transforms. [http://www.na-mic.org/Wiki/images/e/e3/Slicer3_MRML.ppt MRML Slides]
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:Data_Model#Creating_Custom_MRML_Node_Classes | Creating and using new MRML node types]]
||Alex
|-
||[[Slicer3:Data_Model#References_to_MRML_Nodes | Keeping references to MRML nodes ]]
||Alex
|-
||[[Slicer3:Data_Model#Undo/Redo_Mechanism | How undo/redo works, and how to enable it in your code]]
||Alex
|-
|style="background:#ddf"|'''GUI'''
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:StatelessGUI | Keeping the GUI stateless]]
||wjp
|-
||[[Slicer3:EventBindings | Adding keyboard shortcuts]]
||wjp
|-
||[[Slicer3:Human_Interface_and_Style_Guide_for_Developers | GUI style guidelines]]
||wjp
|-
||[[Slicer3:Usability#User-centered_design_practice_for_3DSlicer | User-centered design practice]]
||wjp
|-
||[[Slicer3:Slicer3Brand | 3DSlicer's logo and visual communication guidelines]]
||wjp
|-
||[[Slicer3:Execution_Model_Documentation#Adding_Module_Logos_to_Slicer3 | Incorporating your group's logo and attributions]]
||Jim
|-
||[[Slicer3:GUI_Experiments | Some experiments/advanced techniques for developing slicer3 interfaces]]
||Steve
|-
|style="background:#ddf"|'''Engineering'''
|style="background:#ddf"|'''Key People'''
|-
||Tips for avoiding memory leaks: Current Practice
||Steve
|-
||Tips for avoiding memory leaks: [[Slicer3:Memory Management | Suggested change to SmartPointers]]
||Jim
|-
||Generating tests
||Bill
|-
||[[Slicer3:Testing | Setting up Testing]]
||
|-
||[[Slicer3:Builds | Build Information]]
||
|-
||[[Slicer3:Launcher| The Launcher]]
||
|-
|style="background:#ddf"|'''Documenting your module''' As soon as the wiki page template is finalized, and the infrastructure is added to link to this wiki page from the "Help & Acknowledgment" panel in your module's GUI, we will ask developers to fill out a brief document describing your module and its use. Stay tuned for developments...
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:DocumentationWink|Documenting a module with wink]]
||
|-
|style="background:#ddf"|'''Integrate Slicer3 into a development environment'''
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3::Eclipse | Eclipse]]
||keilhack
|-
||[[Slicer3::MSVS200X | Microsoft Visual Studio 200x]]
||
|}

== Quick Links to Slicer3 Projects ==

Projects should correspond to the outstanding issues listed on the '''[[Slicer3:Status_Summary|Status Summary]]'''. Please refer to the '''[[Slicer3:FeatureRequests|Feature Requests]]''' from users when planning your implementations.

{|align="left"
|-
|style="background:#ddf" width="60%"|'''Slicer3 Projects'''
|style="background:#ddf" width="40%"|'''Key People''' Bold names are responsible for an aspect of the project.
|-
||[[Slicer3:Architecture/Features|Architecture/Features]]
||'''Steve Pieper''', Group: Bill Lorensen, Ron Kikinis, Mike Halle, Noby Hata
|-
||[[Slicer3:Data_Model|Data Model / libMRML]]
||'''Alex''', Steve
|-
||[[Slicer3:Execution_Model|Execution Model / Command Line Modules]]
||'''Jim Miller''', Bill Lorensen
|-
||[[Slicer3:Interface_Design|Interface Design and Usability ]]
||'''Wendy Plesniak''', KWWidgets: Sebastien Barre, Yumin Yuan
|-
||[[Slicer3:Transition_of_Slicer2.x_Modules|Transition of Selected Slicer2.x Modules to Slicer3]]
||'''Nicole''', Katie, Wendy, Mathieu
|-
||[[Slicer3:DTMRI|DTMRI]]
||'''Alex''' with help from Diffusion Images: '''Raul''', Tractography: '''Lauren''' [http://lmi.bwh.harvard.edu LMI]
|-
||[[Slicer3:Editor|Editor]]
||'''Steve'''
|-
||[[Slicer3:ColorsFiducialsFreesurferModelmaker|Colors, Fiducials, FreeSurfer, ModelMaker]]
||'''Nicole'''
|-
||[[Slicer3:_Image_Guided_Therapy_%28IGT%29|IGT, Trackers]]
||'''Haiying'''
|-
||[[Slicer3:EM|EMSegment Interface]]
||'''Brad Davis'''
|-
||[[Slicer3:Slicer_Daemon|SlicerDaemon Interface (for unu, matlab)]]
||'''Steve Pieper'''
|-
||[[Slicer3:Build/Test/Deploy|Build/Test/Deploy System]]
||'''Andy''', Katie
|-
||[[Slicer3:Pipeline_Integration|Loni Pipeline Integration]]
||'''Jags'''
|-
||[[Slicer3:Batchmake_Integration|Batchmake/GRID Integration]]
||'''Julien Jomier'''
|-
||[[Slicer3:Registration|Registration Modules]]
||'''Jim Miller''', Steve Pieper
|-
||[http://www.na-mic.org/Wiki/index.php/ITK_Registration_Optimization Improvements to the registration framework]
||'''Stephen Aylward'''
|-
||[[Slicer3:Python|Python Integration]]
||'''Dan Blezek'''
|-
||[[Slicer3:Grid_Interface|Grid Integration]]
||'''Jeff Grethe''', Neil
|-
||[[Slicer3:Performance_Analysis|Slicer3:Performance Analysis]]
||'''Katie'''
|-
||[[Slicer3:ThreadingToolKit|Threading ToolKit]]
||'''Dan Blezek, James Miller, Stephen Aylward'''
|-
||[[Slicer3:Volume Rendering |Volume Rendering]]
||'''Andy'''
|-
||[[Slicer3:Volume Rendering With Cuda|Volume Rendering With CUDA]]
||'''Ben'''
|-
||[[Slicer3:XNAT |XNAT Interface]]
||'''Steve''', Wendy, Dan Marcus, Tim Olsen
|-
||[[Slicer3:LDDMM |LDDMM Interface]]
||'''Steve''', Anthony Kolasny
|-
||[[Slicer3:Web Presence |Web Presence]]
||'''Nicole Aucoin''', Zack Galbreath
|-
||[[Slicer3:Loadable Modules |Loadable Modules]]
||'''Alex Yarmarkovich''', Steve Pieper
|-
||[http://www.slicer.org/slicerWiki/index.php/Modules:Volumes:Diffusion_Editor-Documentation Diffusion Editor]
||'''Kerstin'''
|-
||[[Slicer3:TimeSeries and Multi-Volume Data | TimeSeries and Multi-Volume Data]]
||Steve Pieper, Daniel Blezek, Dominik Meier, Wendy Plesniak
|-
||[[Slicer3:Remote Data Handling | Remote Data Handling]]
||Steve Pieper, Nicole Aucoin, Wendy Plesniak
|-
||[[Slicer3:Module:QueryAtlas |Query Atlas]]
||'''Wendy Plesniak'''
|-
||[[Slicer3:MistSlicer | MistSlicer]]
||'''Yuichiro Hayashi''', Kensaku Mori, Nobuhiko Hata
|}

== Slicer 3 Quick links to the Source code ==

The Slicer3 svn repository:

svn co http://svn.slicer.org/Slicer3/trunk Slicer3

Use [http://viewvc.slicer.org ViewVC to browse the repository]

[http://www.na-mic.org/Wiki/index.php/Engineering:SandBox Instructions for NA-MIC svn]

[[Slicer3:Build_Instructions|Slicer3 build instructions]]

[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Doxygen documentation for Slicer3].

The [[Slicer3:VisualBlog|Slicer3 VisualBlog]] shows screenshots of slicer developments.

Developers should follow the [[Slicer3:Style|Slicer 3 Coding Style]].

[http://www.cdash.org/CDash/index.php?project=Slicer3 Slicer3 Dashboard (As Of May 2, 2008)]

[http://www.na-mic.org/Slicer3/Dashboard Slicer3 Dashboard (Before May 2, 2008)]

[http://na-mic.org/Mantis/main_page.php Slicer Bug Tracker]

Discussion of slicer3 takes place on the slicer-devel at massmail.spl.harvard.edu list. To join developer's mailing list, send a request to: slicer-devel-request at massmail.spl.harvard.edu with the keyword '''''subscribe''''' as the subject. Or access the [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-devel slicer-devel archives and web administration interface].

== Design Information ==

May 23, 2006: [http://www.na-mic.org/Wiki/index.php/Algorithms:Core1Visit_May06 Algorithm Core workshop.]

April 3, 2006: [[Media:Slicer_3-alpha-2006-04-03.ppt| Slicer 3 alpha]] technical powerpoint presentation.

Slicer3:Developers

2008-11-08T23:50:56Z

Melonakos:

__NOTOC__
= Slicer 3 Developer Page =
[[Image:Slicer3LogoHorizontalBeta.png|right]]
This page contains links to Slicer3 developer resources and events.

Click here for '''[[Slicer3:Events|Slicer3 Events]]'''

== Slicer 3 Architecture Overview ==
For more details on the slicer architecture see: [[media:Slicer 3-beta-2007-04-16.ppt | Architecture Slides]] (updated April, 2007).

<gallery caption="Highlights of the new architecture" widths="200px" perrow="4">
Image:Slicer3-Architecture.jpg
Image:Slicer3-Architecture-MRML.jpg
Image:Slicer3-Architecture-Layers.jpg
Image:ExecutionModelPlugins.png
</gallery>

== Quick Links for Developers ==
This section centrally locates many existing (and developing) wiki pages useful to Slicer3 developers. The content developed for the January 2007 AHM.

{|align="left"
|-
|style="background:#ddf" width="60%"|'''Introduction to Slicer3'''
|style="background:#ddf" width="40%"|'''Key People'''
|-
||[[Media:SlicerHistoricalTimeline.ppt | Slicer3 Historical Timeline]]
||
|-
||[[Slicer3:Status_Summary | Status overview]] and [http://slicerl.bwh.harvard.edu/tmp/slicer3-PreAHMBeta%20Demo/slicer3-PreAHMBeta.htm Demo]
||
|-
||[[Media:GUIMap.png|Schematic of application interface & functionality]]
||
|-
||[[Media:SliceGUI.png|Schematic of slice GUI]]
||
|-
||[[Slicer3:Build_Instructions | Getting the software and troubleshooting]]
||
|-
||[[media:Slicer 3-beta-2007-01-10.ppt | Overall Architecture]] and [[Slicer3:Style|Slicer 3 Coding Style]]
||
|-
||[[Slicer3:Contributing_codes_to_Slicer3| Contributing codes to Slicer3]]
||
|-
|style="background:#ddf"|'''Two module types (Command line and Interactive)'''
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:Execution_Model_Documentation | Command line modules and how to implement one]]
||Jim and Bill [[media:Slicer3-ExecutionModelJune2006.ppt| Intro]]
|-
||[[Slicer3:How_to_implement_an_Interactive_Module_GUI | How to implement an interactive module]]
||wjp
|-
|style="background:#ddf"|'''MRML''' Medical Reality Modeling Language (MRML) is a language implemented as a type of XML document, with new tags defined to handle medical image data types such as volumes, models or coordinate transforms. [http://www.na-mic.org/Wiki/images/e/e3/Slicer3_MRML.ppt MRML Slides]
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:Data_Model#Creating_Custom_MRML_Node_Classes | Creating and using new MRML node types]]
||Alex
|-
||[[Slicer3:Data_Model#References_to_MRML_Nodes | Keeping references to MRML nodes ]]
||Alex
|-
||[[Slicer3:Data_Model#Undo/Redo_Mechanism | How undo/redo works, and how to enable it in your code]]
||Alex
|-
|style="background:#ddf"|'''GUI'''
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:StatelessGUI | Keeping the GUI stateless]]
||wjp
|-
||[[Slicer3:EventBindings | Adding keyboard shortcuts]]
||wjp
|-
||[[Slicer3:Human_Interface_and_Style_Guide_for_Developers | GUI style guidelines]]
||wjp
|-
||[[Slicer3:Usability#User-centered_design_practice_for_3DSlicer | User-centered design practice]]
||wjp
|-
||[[Slicer3:Slicer3Brand | 3DSlicer's logo and visual communication guidelines]]
||wjp
|-
||[[Slicer3:Execution_Model_Documentation#Adding_Module_Logos_to_Slicer3 | Incorporating your group's logo and attributions]]
||Jim
|-
||[[Slicer3:GUI_Experiments | Some experiments/advanced techniques for developing slicer3 interfaces]]
||Steve
|-
|style="background:#ddf"|'''Engineering'''
|style="background:#ddf"|'''Key People'''
|-
||Tips for avoiding memory leaks: Current Practice
||Steve
|-
||Tips for avoiding memory leaks: [[Slicer3:Memory Management | Suggested change to SmartPointers]]
||Jim
|-
||Generating tests
||Bill
|-
||[[Slicer3:Testing | Setting up Testing]]
||
|-
||[[Slicer3:Builds | Build Information]]
||
|-
||[[Slicer3:Launcher| The Launcher]]
||
|-
|style="background:#ddf"|'''Documenting your module''' As soon as the wiki page template is finalized, and the infrastructure is added to link to this wiki page from the "Help & Acknowledgment" panel in your module's GUI, we will ask developers to fill out a brief document describing your module and its use. Stay tuned for developments...
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3:DocumentationWink|Documenting a module with wink]]
||
|-
|style="background:#ddf"|'''Integrate Slicer3 into a development environment'''
|style="background:#ddf"|'''Key People'''
|-
||[[Slicer3::Eclipse | Eclipse]]
||keilhack
|-
||[[Slicer3::MSVS200X | Microsoft Visual Studio 200x]]
||
|}

== Slicer 3 Projects ==

Projects should correspond to the outstanding issues listed on the '''[[Slicer3:Status_Summary|Status Summary]]'''. Please refer to the '''[[Slicer3:FeatureRequests|Feature Requests]]''' from users when planning your implementations.

''If your name is in bold, you are responsible for that aspect of the project''

* '''[[Slicer3:Architecture/Features|Architecture/Features]]''' ('''Steve Pieper''', Group: Bill Lorensen, Ron Kikinis, Mike Halle, Noby Hata)
* '''[[Slicer3:Data_Model|Data Model / libMRML]]''' ('''Alex''', Steve)
* '''[[Slicer3:Execution_Model|Execution Model / Command Line Modules]]''' ('''Jim Miller''', Bill Lorensen)
* '''[[Slicer3:Interface_Design|Interface Design and Usability ]]''' ('''Wendy Plesniak''', KWWidgets: Sebastien Barre, Yumin Yuan)
* '''[[Slicer3:Transition_of_Slicer2.x_Modules|Transition of Selected Slicer2.x Modules to Slicer3]]''' ('''Nicole''', Katie, Wendy, Mathieu)
** [[Slicer3:DTMRI|DTMRI]]<nowiki>: </nowiki>'''Alex''' with help from Diffusion Images: '''Raul''', Tractography: '''Lauren''' [http://lmi.bwh.harvard.edu LMI]
** [[Slicer3:Editor|Editor]]<nowiki>: </nowiki>'''Steve'''
** [[Slicer3:ColorsFiducialsFreesurferModelmaker|Colors, Fiducials, FreeSurfer, ModelMaker]]<nowiki>: </nowiki>'''Nicole'''
** [[Slicer3:_Image_Guided_Therapy_%28IGT%29|IGT, Trackers]]<nowiki>: </nowiki>'''Haiying'''
** [[Slicer3:EM|EMSegment Interface]]<nowiki>: </nowiki>'''Brad Davis'''
** [[Slicer3:Slicer_Daemon|SlicerDaemon Interface (for unu, matlab)]]<nowiki>: </nowiki>'''Steve Pieper'''
* '''[[Slicer3:Build/Test/Deploy|Build/Test/Deploy System]]''' ('''Andy''', Katie)
* '''[[Slicer3:Pipeline_Integration|Loni Pipeline Integration]]''' ('''Jags''')
* '''[[Slicer3:Batchmake_Integration|Batchmake/GRID Integration]]''' ('''Julien Jomier''')
* '''[[Slicer3:Registration|Registration Modules]]''' ('''Jim Miller''', Steve Pieper)
* '''[http://www.na-mic.org/Wiki/index.php/ITK_Registration_Optimization Improvements to the registration framework]''' ('''Stephen Aylward''')
* '''[[Slicer3:Python|Python Integration]]''' ('''Dan Blezek''')
* '''[[Slicer3:Grid_Interface|Grid Integration]]''' ('''Jeff Grethe''', Neil)
* '''[[Slicer3:Performance_Analysis|Slicer3:Performance Analysis]]''' ('''Katie''')
* '''[[Slicer3:ThreadingToolKit|Threading ToolKit]]''' ('''Dan Blezek, James Miller, Stephen Aylward''')
* '''[[Slicer3:Volume Rendering |Volume Rendering]]''' ('''Andy''')
* '''[[Slicer3:Volume Rendering With Cuda|Volume Rendering With CUDA]]''' ('''Ben''')
* '''[[Slicer3:XNAT |XNAT Interface]]''' ('''Steve''', Wendy, Dan Marcus, Tim Olsen)
* '''[[Slicer3:LDDMM |LDDMM Interface]]''' ('''Steve''', Anthony Kolasny)
* '''[[Slicer3:Web Presence |Web Presence]]''' ('''Nicole Aucoin'''), Zack Galbreath
* '''[[Slicer3:Loadable Modules |Loadable Modules]]''' ('''Alex Yarmarkovich'''), Steve Pieper
* '''[http://www.slicer.org/slicerWiki/index.php/Modules:Volumes:Diffusion_Editor-Documentation Diffusion Editor]''' ('''Kerstin''')
* '''[[Slicer3:TimeSeries and Multi-Volume Data | TimeSeries and Multi-Volume Data]]''' (Steve Pieper, Daniel Blezek, Dominik Meier, Wendy Plesniak)
* '''[[Slicer3:Remote Data Handling | Remote Data Handling]]''' (Steve Pieper, Nicole Aucoin, Wendy Plesniak)
* '''[[Slicer3:Module:QueryAtlas |Query Atlas]]''' ('''Wendy Plesniak''')
* '''[[Slicer3:MistSlicer | MistSlicer]]''' ('''Yuichiro Hayashi''', Kensaku Mori, Nobuhiko Hata)

== Slicer 3 Quick links to the Source code ==

The Slicer3 svn repository:

svn co http://svn.slicer.org/Slicer3/trunk Slicer3

Use [http://viewvc.slicer.org ViewVC to browse the repository]

[http://www.na-mic.org/Wiki/index.php/Engineering:SandBox Instructions for NA-MIC svn]

[[Slicer3:Build_Instructions|Slicer3 build instructions]]

[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Doxygen documentation for Slicer3].

The [[Slicer3:VisualBlog|Slicer3 VisualBlog]] shows screenshots of slicer developments.

Developers should follow the [[Slicer3:Style|Slicer 3 Coding Style]].

[http://www.cdash.org/CDash/index.php?project=Slicer3 Slicer3 Dashboard (As Of May 2, 2008)]

[http://www.na-mic.org/Slicer3/Dashboard Slicer3 Dashboard (Before May 2, 2008)]

[http://na-mic.org/Mantis/main_page.php Slicer Bug Tracker]

Discussion of slicer3 takes place on the slicer-devel at massmail.spl.harvard.edu list. To join developer's mailing list, send a request to: slicer-devel-request at massmail.spl.harvard.edu with the keyword '''''subscribe''''' as the subject. Or access the [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-devel slicer-devel archives and web administration interface].

== Design Information ==

May 23, 2006: [http://www.na-mic.org/Wiki/index.php/Algorithms:Core1Visit_May06 Algorithm Core workshop.]

April 3, 2006: [[Media:Slicer_3-alpha-2006-04-03.ppt| Slicer 3 alpha]] technical powerpoint presentation.

Slicer3:Developers

2008-11-08T23:29:06Z

Melonakos:

__NOTOC__
= Slicer 3 Developer Page =
[[Image:Slicer3LogoHorizontalBeta.png|right]]
This page contains links to Slicer3 developer resources and events.

Click here for '''[[Slicer3:Events|Slicer3 Events]]'''

== Slicer 3 Architecture Overview ==
For more details on the slicer architecture see: [[media:Slicer 3-beta-2007-04-16.ppt | Architecture Slides]] (updated April, 2007).

<gallery caption="Highlights of the new architecture" widths="200px" perrow="4">
Image:Slicer3-Architecture.jpg
Image:Slicer3-Architecture-MRML.jpg
Image:Slicer3-Architecture-Layers.jpg
Image:ExecutionModelPlugins.png
</gallery>

== Information for Developers ==
This section centrally locates many existing (and developing) wiki pages useful to Slicer3 developers. The content developed for the January 2007 AHM.

=== Introduction to Slicer3 ===
* [[Media:SlicerHistoricalTimeline.ppt | Slicer3 Historical Timeline]]
* [[Slicer3:Status_Summary | Status overview]] and [http://slicerl.bwh.harvard.edu/tmp/slicer3-PreAHMBeta%20Demo/slicer3-PreAHMBeta.htm Demo]
* [[Media:GUIMap.png|Schematic of application interface & functionality]]
* [[Media:SliceGUI.png|Schematic of slice GUI]]
* [[Slicer3:Build_Instructions | Getting the software and troubleshooting]]
* [[media:Slicer 3-beta-2007-01-10.ppt | Overall Architecture]] and [[Slicer3:Style|Slicer 3 Coding Style]]
* [[Slicer3:Contributing_codes_to_Slicer3| Contributing codes to Slicer3]]

=== Two module types (Command line and Interactive) ===
* [[Slicer3:Execution_Model_Documentation | Command line modules and how to implement one]] (Jim and Bill) [[media:Slicer3-ExecutionModelJune2006.ppt| Intro]]
*[[Slicer3:How_to_implement_an_Interactive_Module_GUI | How to implement an interactive module]] (wjp)

=== MRML [http://www.na-mic.org/Wiki/images/e/e3/Slicer3_MRML.ppt MRML Slides](Alex) ===
Medical Reality Modeling Language (MRML) is a language implemented as a type of XML document, with new tags defined to handle medical image data types such as volumes, models or coordinate transforms.

* [[Slicer3:Data_Model#Creating_Custom_MRML_Node_Classes | Creating and using new MRML node types]] (Alex)
* [[Slicer3:Data_Model#References_to_MRML_Nodes | Keeping references to MRML nodes ]] (Alex)
* [[Slicer3:Data_Model#Undo/Redo_Mechanism | How undo/redo works, and how to enable it in your code]] (Alex)

=== GUI ===
* [[Slicer3:StatelessGUI | Keeping the GUI stateless]] (wjp)
* [[Slicer3:EventBindings | Adding keyboard shortcuts]] (wjp)
* [[Slicer3:Human_Interface_and_Style_Guide_for_Developers | GUI style guidelines]] (wjp)
* [[Slicer3:Usability#User-centered_design_practice_for_3DSlicer | User-centered design practice]] (wjp)
* [[Slicer3:Slicer3Brand | 3DSlicer's logo and visual communication guidelines]] (wjp)
* [[Slicer3:Execution_Model_Documentation#Adding_Module_Logos_to_Slicer3 | Incorporating your group's logo and attributions]] (Jim)
* [[Slicer3:GUI_Experiments | Some experiments/advanced techniques for developing slicer3 interfaces]] (Steve)

=== Engineering ===
* Tips for avoiding memory leaks
** Current Practice (Steve)
** [[Slicer3:Memory Management | Suggested change to SmartPointers]] (Jim)
* Generating tests (Bill)
* [[Slicer3:Testing | Setting up Testing]]
* [[Slicer3:Builds | Build Information]]
* [[Slicer3:Launcher| The Launcher]]

=== Documenting your module ===
* As soon as the wiki page template is finalized, and the infrastructure is added to link to this wiki page from the "Help & Acknowledgment" panel in your module's GUI, we will ask developers to fill out a brief document describing your module and its use. Stay tuned for developments...
* [[Slicer3:DocumentationWink|Documenting a module with wink]]

=== Integrate Slicer3 into a development environment ===
* [[Slicer3::Eclipse | Eclipse]] (keilhack)
* [[Slicer3::MSVS200X | Microsoft Visual Studio 200x]]

== Slicer 3 Projects ==

Projects should correspond to the outstanding issues listed on the '''[[Slicer3:Status_Summary|Status Summary]]'''. Please refer to the '''[[Slicer3:FeatureRequests|Feature Requests]]''' from users when planning your implementations.

''If your name is in bold, you are responsible for that aspect of the project''

* '''[[Slicer3:Architecture/Features|Architecture/Features]]''' ('''Steve Pieper''', Group: Bill Lorensen, Ron Kikinis, Mike Halle, Noby Hata)
* '''[[Slicer3:Data_Model|Data Model / libMRML]]''' ('''Alex''', Steve)
* '''[[Slicer3:Execution_Model|Execution Model / Command Line Modules]]''' ('''Jim Miller''', Bill Lorensen)
* '''[[Slicer3:Interface_Design|Interface Design and Usability ]]''' ('''Wendy Plesniak''', KWWidgets: Sebastien Barre, Yumin Yuan)
* '''[[Slicer3:Transition_of_Slicer2.x_Modules|Transition of Selected Slicer2.x Modules to Slicer3]]''' ('''Nicole''', Katie, Wendy, Mathieu)
** [[Slicer3:DTMRI|DTMRI]]<nowiki>: </nowiki>'''Alex''' with help from Diffusion Images: '''Raul''', Tractography: '''Lauren''' [http://lmi.bwh.harvard.edu LMI]
** [[Slicer3:Editor|Editor]]<nowiki>: </nowiki>'''Steve'''
** [[Slicer3:ColorsFiducialsFreesurferModelmaker|Colors, Fiducials, FreeSurfer, ModelMaker]]<nowiki>: </nowiki>'''Nicole'''
** [[Slicer3:_Image_Guided_Therapy_%28IGT%29|IGT, Trackers]]<nowiki>: </nowiki>'''Haiying'''
** [[Slicer3:EM|EMSegment Interface]]<nowiki>: </nowiki>'''Brad Davis'''
** [[Slicer3:Slicer_Daemon|SlicerDaemon Interface (for unu, matlab)]]<nowiki>: </nowiki>'''Steve Pieper'''
* '''[[Slicer3:Build/Test/Deploy|Build/Test/Deploy System]]''' ('''Andy''', Katie)
* '''[[Slicer3:Pipeline_Integration|Loni Pipeline Integration]]''' ('''Jags''')
* '''[[Slicer3:Batchmake_Integration|Batchmake/GRID Integration]]''' ('''Julien Jomier''')
* '''[[Slicer3:Registration|Registration Modules]]''' ('''Jim Miller''', Steve Pieper)
* '''[http://www.na-mic.org/Wiki/index.php/ITK_Registration_Optimization Improvements to the registration framework]''' ('''Stephen Aylward''')
* '''[[Slicer3:Python|Python Integration]]''' ('''Dan Blezek''')
* '''[[Slicer3:Grid_Interface|Grid Integration]]''' ('''Jeff Grethe''', Neil)
* '''[[Slicer3:Performance_Analysis|Slicer3:Performance Analysis]]''' ('''Katie''')
* '''[[Slicer3:ThreadingToolKit|Threading ToolKit]]''' ('''Dan Blezek, James Miller, Stephen Aylward''')
* '''[[Slicer3:Volume Rendering |Volume Rendering]]''' ('''Andy''')
* '''[[Slicer3:Volume Rendering With Cuda|Volume Rendering With CUDA]]''' ('''Ben''')
* '''[[Slicer3:XNAT |XNAT Interface]]''' ('''Steve''', Wendy, Dan Marcus, Tim Olsen)
* '''[[Slicer3:LDDMM |LDDMM Interface]]''' ('''Steve''', Anthony Kolasny)
* '''[[Slicer3:Web Presence |Web Presence]]''' ('''Nicole Aucoin'''), Zack Galbreath
* '''[[Slicer3:Loadable Modules |Loadable Modules]]''' ('''Alex Yarmarkovich'''), Steve Pieper
* '''[http://www.slicer.org/slicerWiki/index.php/Modules:Volumes:Diffusion_Editor-Documentation Diffusion Editor]''' ('''Kerstin''')
* '''[[Slicer3:TimeSeries and Multi-Volume Data | TimeSeries and Multi-Volume Data]]''' (Steve Pieper, Daniel Blezek, Dominik Meier, Wendy Plesniak)
* '''[[Slicer3:Remote Data Handling | Remote Data Handling]]''' (Steve Pieper, Nicole Aucoin, Wendy Plesniak)
* '''[[Slicer3:Module:QueryAtlas |Query Atlas]]''' ('''Wendy Plesniak''')
* '''[[Slicer3:MistSlicer | MistSlicer]]''' ('''Yuichiro Hayashi''', Kensaku Mori, Nobuhiko Hata)

== Slicer 3 Quick links to the Source code ==

The Slicer3 svn repository:

svn co http://svn.slicer.org/Slicer3/trunk Slicer3

Use [http://viewvc.slicer.org ViewVC to browse the repository]

[http://www.na-mic.org/Wiki/index.php/Engineering:SandBox Instructions for NA-MIC svn]

[[Slicer3:Build_Instructions|Slicer3 build instructions]]

[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Doxygen documentation for Slicer3].

The [[Slicer3:VisualBlog|Slicer3 VisualBlog]] shows screenshots of slicer developments.

Developers should follow the [[Slicer3:Style|Slicer 3 Coding Style]].

[http://www.cdash.org/CDash/index.php?project=Slicer3 Slicer3 Dashboard (As Of May 2, 2008)]

[http://www.na-mic.org/Slicer3/Dashboard Slicer3 Dashboard (Before May 2, 2008)]

[http://na-mic.org/Mantis/main_page.php Slicer Bug Tracker]

Discussion of slicer3 takes place on the slicer-devel at massmail.spl.harvard.edu list. To join developer's mailing list, send a request to: slicer-devel-request at massmail.spl.harvard.edu with the keyword '''''subscribe''''' as the subject. Or access the [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-devel slicer-devel archives and web administration interface].

== Design Information ==

May 23, 2006: [http://www.na-mic.org/Wiki/index.php/Algorithms:Core1Visit_May06 Algorithm Core workshop.]

April 3, 2006: [[Media:Slicer_3-alpha-2006-04-03.ppt| Slicer 3 alpha]] technical powerpoint presentation.

Special:Badtitle/NS100:Slicer4Industry

2008-11-08T23:24:39Z

Melonakos:

= Commercial Use =

We invite commercial entities to use 3D Slicer.

== Slicer's License makes Commercial Use Available ==

* 3D Slicer is a Free Open Source Software distributed under a BSD style license.
* The license does not impose restrictions on the use of the software.
* 3D Slicer is NOT FDA approved. It is the users responsibility to ensure compliance with applicable rules and regulations.
* For details, please see the full [http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl license].

== Examples of Slicer-Based Projects in Real Settings ==
{|
[[Image:Tempany-JMRI2008-fig8.jpg|thumb|left|350px|MR-guided prostate interventions. See [http://www.slicer.org/pages/Special:PubDB_View?dspaceid=1225 Tempany et al J Magn Reson Imaging, 2008 Feb;27(2):356-67.] for more info.]]
|
[[Image:Fedorov-Supercomputing2006-fig3.png|thumb|left|350px|Toward Real-Time Image Guided Neurosurgery Using Distributed and Grid Computing. See [http://www.slicer.org/pages/Special:PubDB_View?dspaceid=44 Chrisochoides et al IEEE Conference on Supercomputing 2006] for more info.]]
|}

File:Tempany-JMRI2008-fig8.jpg

2008-11-08T23:23:57Z

Melonakos:

Slicer3:Developers

2008-11-08T23:17:24Z

Melonakos:

__NOTOC__
= Slicer 3 Developer Page =
[[Image:Slicer3LogoHorizontalBeta.png|right]]
This page contains links to Slicer3 developer resources and events.

Click here for '''[[Slicer3:Events|Slicer3 Events]]'''

== Slicer 3 Overview ==
For more details on the slicer architecture see: [[media:Slicer 3-beta-2007-04-16.ppt | Architecture Slides]] (updated April, 2007).

<gallery caption="Highlights of the new architecture" widths="200px" perrow="4">
Image:Slicer3-Architecture.jpg
Image:Slicer3-Architecture-MRML.jpg
Image:Slicer3-Architecture-Layers.jpg
Image:ExecutionModelPlugins.png
</gallery>

== Information for Developers ==
This section centrally locates many existing (and developing) wiki pages useful to Slicer3 developers. The content developed for the January 2007 AHM.

=== Introduction to Slicer3 ===
* [[Media:SlicerHistoricalTimeline.ppt | Slicer3 Historical Timeline]]
* [[Slicer3:Status_Summary | Status overview]] and [http://slicerl.bwh.harvard.edu/tmp/slicer3-PreAHMBeta%20Demo/slicer3-PreAHMBeta.htm Demo]
* [[Media:GUIMap.png|Schematic of application interface & functionality]]
* [[Media:SliceGUI.png|Schematic of slice GUI]]
* [[Slicer3:Build_Instructions | Getting the software and troubleshooting]]
* [[media:Slicer 3-beta-2007-01-10.ppt | Overall Architecture]] and [[Slicer3:Style|Slicer 3 Coding Style]]
* [[Slicer3:Contributing_codes_to_Slicer3| Contributing codes to Slicer3]]

=== Two module types (Command line and Interactive) ===
* [[Slicer3:Execution_Model_Documentation | Command line modules and how to implement one]] (Jim and Bill) [[media:Slicer3-ExecutionModelJune2006.ppt| Intro]]
*[[Slicer3:How_to_implement_an_Interactive_Module_GUI | How to implement an interactive module]] (wjp)

=== MRML [http://www.na-mic.org/Wiki/images/e/e3/Slicer3_MRML.ppt MRML Slides](Alex) ===
Medical Reality Modeling Language (MRML) is a language implemented as a type of XML document, with new tags defined to handle medical image data types such as volumes, models or coordinate transforms.

* [[Slicer3:Data_Model#Creating_Custom_MRML_Node_Classes | Creating and using new MRML node types]] (Alex)
* [[Slicer3:Data_Model#References_to_MRML_Nodes | Keeping references to MRML nodes ]] (Alex)
* [[Slicer3:Data_Model#Undo/Redo_Mechanism | How undo/redo works, and how to enable it in your code]] (Alex)

=== GUI ===
* [[Slicer3:StatelessGUI | Keeping the GUI stateless]] (wjp)
* [[Slicer3:EventBindings | Adding keyboard shortcuts]] (wjp)
* [[Slicer3:Human_Interface_and_Style_Guide_for_Developers | GUI style guidelines]] (wjp)
* [[Slicer3:Usability#User-centered_design_practice_for_3DSlicer | User-centered design practice]] (wjp)
* [[Slicer3:Slicer3Brand | 3DSlicer's logo and visual communication guidelines]] (wjp)
* [[Slicer3:Execution_Model_Documentation#Adding_Module_Logos_to_Slicer3 | Incorporating your group's logo and attributions]] (Jim)
* [[Slicer3:GUI_Experiments | Some experiments/advanced techniques for developing slicer3 interfaces]] (Steve)

=== Engineering ===
* Tips for avoiding memory leaks
** Current Practice (Steve)
** [[Slicer3:Memory Management | Suggested change to SmartPointers]] (Jim)
* Generating tests (Bill)
* [[Slicer3:Testing | Setting up Testing]]
* [[Slicer3:Builds | Build Information]]
* [[Slicer3:Launcher| The Launcher]]

=== Documenting your module ===
* As soon as the wiki page template is finalized, and the infrastructure is added to link to this wiki page from the "Help & Acknowledgment" panel in your module's GUI, we will ask developers to fill out a brief document describing your module and its use. Stay tuned for developments...
* [[Slicer3:DocumentationWink|Documenting a module with wink]]

=== Integrate Slicer3 into a development environment ===
* [[Slicer3::Eclipse | Eclipse]] (keilhack)
* [[Slicer3::MSVS200X | Microsoft Visual Studio 200x]]

== Slicer 3 Projects ==

Projects should correspond to the outstanding issues listed on the '''[[Slicer3:Status_Summary|Status Summary]]'''. Please refer to the '''[[Slicer3:FeatureRequests|Feature Requests]]''' from users when planning your implementations.

''If your name is in bold, you are responsible for that aspect of the project''

* '''[[Slicer3:Architecture/Features|Architecture/Features]]''' ('''Steve Pieper''', Group: Bill Lorensen, Ron Kikinis, Mike Halle, Noby Hata)
* '''[[Slicer3:Data_Model|Data Model / libMRML]]''' ('''Alex''', Steve)
* '''[[Slicer3:Execution_Model|Execution Model / Command Line Modules]]''' ('''Jim Miller''', Bill Lorensen)
* '''[[Slicer3:Interface_Design|Interface Design and Usability ]]''' ('''Wendy Plesniak''', KWWidgets: Sebastien Barre, Yumin Yuan)
* '''[[Slicer3:Transition_of_Slicer2.x_Modules|Transition of Selected Slicer2.x Modules to Slicer3]]''' ('''Nicole''', Katie, Wendy, Mathieu)
** [[Slicer3:DTMRI|DTMRI]]<nowiki>: </nowiki>'''Alex''' with help from Diffusion Images: '''Raul''', Tractography: '''Lauren''' [http://lmi.bwh.harvard.edu LMI]
** [[Slicer3:Editor|Editor]]<nowiki>: </nowiki>'''Steve'''
** [[Slicer3:ColorsFiducialsFreesurferModelmaker|Colors, Fiducials, FreeSurfer, ModelMaker]]<nowiki>: </nowiki>'''Nicole'''
** [[Slicer3:_Image_Guided_Therapy_%28IGT%29|IGT, Trackers]]<nowiki>: </nowiki>'''Haiying'''
** [[Slicer3:EM|EMSegment Interface]]<nowiki>: </nowiki>'''Brad Davis'''
** [[Slicer3:Slicer_Daemon|SlicerDaemon Interface (for unu, matlab)]]<nowiki>: </nowiki>'''Steve Pieper'''
* '''[[Slicer3:Build/Test/Deploy|Build/Test/Deploy System]]''' ('''Andy''', Katie)
* '''[[Slicer3:Pipeline_Integration|Loni Pipeline Integration]]''' ('''Jags''')
* '''[[Slicer3:Batchmake_Integration|Batchmake/GRID Integration]]''' ('''Julien Jomier''')
* '''[[Slicer3:Registration|Registration Modules]]''' ('''Jim Miller''', Steve Pieper)
* '''[http://www.na-mic.org/Wiki/index.php/ITK_Registration_Optimization Improvements to the registration framework]''' ('''Stephen Aylward''')
* '''[[Slicer3:Python|Python Integration]]''' ('''Dan Blezek''')
* '''[[Slicer3:Grid_Interface|Grid Integration]]''' ('''Jeff Grethe''', Neil)
* '''[[Slicer3:Performance_Analysis|Slicer3:Performance Analysis]]''' ('''Katie''')
* '''[[Slicer3:ThreadingToolKit|Threading ToolKit]]''' ('''Dan Blezek, James Miller, Stephen Aylward''')
* '''[[Slicer3:Volume Rendering |Volume Rendering]]''' ('''Andy''')
* '''[[Slicer3:Volume Rendering With Cuda|Volume Rendering With CUDA]]''' ('''Ben''')
* '''[[Slicer3:XNAT |XNAT Interface]]''' ('''Steve''', Wendy, Dan Marcus, Tim Olsen)
* '''[[Slicer3:LDDMM |LDDMM Interface]]''' ('''Steve''', Anthony Kolasny)
* '''[[Slicer3:Web Presence |Web Presence]]''' ('''Nicole Aucoin'''), Zack Galbreath
* '''[[Slicer3:Loadable Modules |Loadable Modules]]''' ('''Alex Yarmarkovich'''), Steve Pieper
* '''[http://www.slicer.org/slicerWiki/index.php/Modules:Volumes:Diffusion_Editor-Documentation Diffusion Editor]''' ('''Kerstin''')
* '''[[Slicer3:TimeSeries and Multi-Volume Data | TimeSeries and Multi-Volume Data]]''' (Steve Pieper, Daniel Blezek, Dominik Meier, Wendy Plesniak)
* '''[[Slicer3:Remote Data Handling | Remote Data Handling]]''' (Steve Pieper, Nicole Aucoin, Wendy Plesniak)
* '''[[Slicer3:Module:QueryAtlas |Query Atlas]]''' ('''Wendy Plesniak''')
* '''[[Slicer3:MistSlicer | MistSlicer]]''' ('''Yuichiro Hayashi''', Kensaku Mori, Nobuhiko Hata)

== Slicer 3 Quick links to the Source code ==

The Slicer3 svn repository:

svn co http://svn.slicer.org/Slicer3/trunk Slicer3

Use [http://viewvc.slicer.org ViewVC to browse the repository]

[http://www.na-mic.org/Wiki/index.php/Engineering:SandBox Instructions for NA-MIC svn]

[[Slicer3:Build_Instructions|Slicer3 build instructions]]

[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Doxygen documentation for Slicer3].

The [[Slicer3:VisualBlog|Slicer3 VisualBlog]] shows screenshots of slicer developments.

Developers should follow the [[Slicer3:Style|Slicer 3 Coding Style]].

[http://www.cdash.org/CDash/index.php?project=Slicer3 Slicer3 Dashboard (As Of May 2, 2008)]

[http://www.na-mic.org/Slicer3/Dashboard Slicer3 Dashboard (Before May 2, 2008)]

[http://na-mic.org/Mantis/main_page.php Slicer Bug Tracker]

Discussion of slicer3 takes place on the slicer-devel at massmail.spl.harvard.edu list. To join developer's mailing list, send a request to: slicer-devel-request at massmail.spl.harvard.edu with the keyword '''''subscribe''''' as the subject. Or access the [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-devel slicer-devel archives and web administration interface].

== Design Information ==

May 23, 2006: [http://www.na-mic.org/Wiki/index.php/Algorithms:Core1Visit_May06 Algorithm Core workshop.]

April 3, 2006: [[Media:Slicer_3-alpha-2006-04-03.ppt| Slicer 3 alpha]] technical powerpoint presentation.

Slicer3:Developers

2008-11-08T23:16:31Z

Melonakos:

__NOTOC__
= Slicer 3 Developer Page =
This page contains links to Slicer3 developer resources and events.

Click here for '''[[Slicer3:Events|Slicer3 Events]]'''

== Slicer 3 Overview ==
[[Image:Slicer3LogoHorizontalBeta.png]]

* For more details on the slicer architecture see: [[media:Slicer 3-beta-2007-04-16.ppt | Architecture Slides]] (updated April, 2007).
 

<gallery caption="Highlights of the new architecture" widths="200px" perrow="4">
Image:Slicer3-Architecture.jpg
Image:Slicer3-Architecture-MRML.jpg
Image:Slicer3-Architecture-Layers.jpg
Image:ExecutionModelPlugins.png
</gallery>

== Information for Developers ==
This section centrally locates many existing (and developing) wiki pages useful to Slicer3 developers. The content developed for the January 2007 AHM.

=== Introduction to Slicer3 ===
* [[Media:SlicerHistoricalTimeline.ppt | Slicer3 Historical Timeline]]
* [[Slicer3:Status_Summary | Status overview]] and [http://slicerl.bwh.harvard.edu/tmp/slicer3-PreAHMBeta%20Demo/slicer3-PreAHMBeta.htm Demo]
* [[Media:GUIMap.png|Schematic of application interface & functionality]]
* [[Media:SliceGUI.png|Schematic of slice GUI]]
* [[Slicer3:Build_Instructions | Getting the software and troubleshooting]]
* [[media:Slicer 3-beta-2007-01-10.ppt | Overall Architecture]] and [[Slicer3:Style|Slicer 3 Coding Style]]
* [[Slicer3:Contributing_codes_to_Slicer3| Contributing codes to Slicer3]]

=== Two module types (Command line and Interactive) ===
* [[Slicer3:Execution_Model_Documentation | Command line modules and how to implement one]] (Jim and Bill) [[media:Slicer3-ExecutionModelJune2006.ppt| Intro]]
*[[Slicer3:How_to_implement_an_Interactive_Module_GUI | How to implement an interactive module]] (wjp)

=== MRML [http://www.na-mic.org/Wiki/images/e/e3/Slicer3_MRML.ppt MRML Slides](Alex) ===
Medical Reality Modeling Language (MRML) is a language implemented as a type of XML document, with new tags defined to handle medical image data types such as volumes, models or coordinate transforms.

* [[Slicer3:Data_Model#Creating_Custom_MRML_Node_Classes | Creating and using new MRML node types]] (Alex)
* [[Slicer3:Data_Model#References_to_MRML_Nodes | Keeping references to MRML nodes ]] (Alex)
* [[Slicer3:Data_Model#Undo/Redo_Mechanism | How undo/redo works, and how to enable it in your code]] (Alex)

=== GUI ===
* [[Slicer3:StatelessGUI | Keeping the GUI stateless]] (wjp)
* [[Slicer3:EventBindings | Adding keyboard shortcuts]] (wjp)
* [[Slicer3:Human_Interface_and_Style_Guide_for_Developers | GUI style guidelines]] (wjp)
* [[Slicer3:Usability#User-centered_design_practice_for_3DSlicer | User-centered design practice]] (wjp)
* [[Slicer3:Slicer3Brand | 3DSlicer's logo and visual communication guidelines]] (wjp)
* [[Slicer3:Execution_Model_Documentation#Adding_Module_Logos_to_Slicer3 | Incorporating your group's logo and attributions]] (Jim)
* [[Slicer3:GUI_Experiments | Some experiments/advanced techniques for developing slicer3 interfaces]] (Steve)

=== Engineering ===
* Tips for avoiding memory leaks
** Current Practice (Steve)
** [[Slicer3:Memory Management | Suggested change to SmartPointers]] (Jim)
* Generating tests (Bill)
* [[Slicer3:Testing | Setting up Testing]]
* [[Slicer3:Builds | Build Information]]
* [[Slicer3:Launcher| The Launcher]]

=== Documenting your module ===
* As soon as the wiki page template is finalized, and the infrastructure is added to link to this wiki page from the "Help & Acknowledgment" panel in your module's GUI, we will ask developers to fill out a brief document describing your module and its use. Stay tuned for developments...
* [[Slicer3:DocumentationWink|Documenting a module with wink]]

=== Integrate Slicer3 into a development environment ===
* [[Slicer3::Eclipse | Eclipse]] (keilhack)
* [[Slicer3::MSVS200X | Microsoft Visual Studio 200x]]

== Slicer 3 Projects ==

Projects should correspond to the outstanding issues listed on the '''[[Slicer3:Status_Summary|Status Summary]]'''. Please refer to the '''[[Slicer3:FeatureRequests|Feature Requests]]''' from users when planning your implementations.

''If your name is in bold, you are responsible for that aspect of the project''

* '''[[Slicer3:Architecture/Features|Architecture/Features]]''' ('''Steve Pieper''', Group: Bill Lorensen, Ron Kikinis, Mike Halle, Noby Hata)
* '''[[Slicer3:Data_Model|Data Model / libMRML]]''' ('''Alex''', Steve)
* '''[[Slicer3:Execution_Model|Execution Model / Command Line Modules]]''' ('''Jim Miller''', Bill Lorensen)
* '''[[Slicer3:Interface_Design|Interface Design and Usability ]]''' ('''Wendy Plesniak''', KWWidgets: Sebastien Barre, Yumin Yuan)
* '''[[Slicer3:Transition_of_Slicer2.x_Modules|Transition of Selected Slicer2.x Modules to Slicer3]]''' ('''Nicole''', Katie, Wendy, Mathieu)
** [[Slicer3:DTMRI|DTMRI]]<nowiki>: </nowiki>'''Alex''' with help from Diffusion Images: '''Raul''', Tractography: '''Lauren''' [http://lmi.bwh.harvard.edu LMI]
** [[Slicer3:Editor|Editor]]<nowiki>: </nowiki>'''Steve'''
** [[Slicer3:ColorsFiducialsFreesurferModelmaker|Colors, Fiducials, FreeSurfer, ModelMaker]]<nowiki>: </nowiki>'''Nicole'''
** [[Slicer3:_Image_Guided_Therapy_%28IGT%29|IGT, Trackers]]<nowiki>: </nowiki>'''Haiying'''
** [[Slicer3:EM|EMSegment Interface]]<nowiki>: </nowiki>'''Brad Davis'''
** [[Slicer3:Slicer_Daemon|SlicerDaemon Interface (for unu, matlab)]]<nowiki>: </nowiki>'''Steve Pieper'''
* '''[[Slicer3:Build/Test/Deploy|Build/Test/Deploy System]]''' ('''Andy''', Katie)
* '''[[Slicer3:Pipeline_Integration|Loni Pipeline Integration]]''' ('''Jags''')
* '''[[Slicer3:Batchmake_Integration|Batchmake/GRID Integration]]''' ('''Julien Jomier''')
* '''[[Slicer3:Registration|Registration Modules]]''' ('''Jim Miller''', Steve Pieper)
* '''[http://www.na-mic.org/Wiki/index.php/ITK_Registration_Optimization Improvements to the registration framework]''' ('''Stephen Aylward''')
* '''[[Slicer3:Python|Python Integration]]''' ('''Dan Blezek''')
* '''[[Slicer3:Grid_Interface|Grid Integration]]''' ('''Jeff Grethe''', Neil)
* '''[[Slicer3:Performance_Analysis|Slicer3:Performance Analysis]]''' ('''Katie''')
* '''[[Slicer3:ThreadingToolKit|Threading ToolKit]]''' ('''Dan Blezek, James Miller, Stephen Aylward''')
* '''[[Slicer3:Volume Rendering |Volume Rendering]]''' ('''Andy''')
* '''[[Slicer3:Volume Rendering With Cuda|Volume Rendering With CUDA]]''' ('''Ben''')
* '''[[Slicer3:XNAT |XNAT Interface]]''' ('''Steve''', Wendy, Dan Marcus, Tim Olsen)
* '''[[Slicer3:LDDMM |LDDMM Interface]]''' ('''Steve''', Anthony Kolasny)
* '''[[Slicer3:Web Presence |Web Presence]]''' ('''Nicole Aucoin'''), Zack Galbreath
* '''[[Slicer3:Loadable Modules |Loadable Modules]]''' ('''Alex Yarmarkovich'''), Steve Pieper
* '''[http://www.slicer.org/slicerWiki/index.php/Modules:Volumes:Diffusion_Editor-Documentation Diffusion Editor]''' ('''Kerstin''')
* '''[[Slicer3:TimeSeries and Multi-Volume Data | TimeSeries and Multi-Volume Data]]''' (Steve Pieper, Daniel Blezek, Dominik Meier, Wendy Plesniak)
* '''[[Slicer3:Remote Data Handling | Remote Data Handling]]''' (Steve Pieper, Nicole Aucoin, Wendy Plesniak)
* '''[[Slicer3:Module:QueryAtlas |Query Atlas]]''' ('''Wendy Plesniak''')
* '''[[Slicer3:MistSlicer | MistSlicer]]''' ('''Yuichiro Hayashi''', Kensaku Mori, Nobuhiko Hata)

== Slicer 3 Quick links to the Source code ==

The Slicer3 svn repository:

svn co http://svn.slicer.org/Slicer3/trunk Slicer3

Use [http://viewvc.slicer.org ViewVC to browse the repository]

[http://www.na-mic.org/Wiki/index.php/Engineering:SandBox Instructions for NA-MIC svn]

[[Slicer3:Build_Instructions|Slicer3 build instructions]]

[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Doxygen documentation for Slicer3].

The [[Slicer3:VisualBlog|Slicer3 VisualBlog]] shows screenshots of slicer developments.

Developers should follow the [[Slicer3:Style|Slicer 3 Coding Style]].

[http://www.cdash.org/CDash/index.php?project=Slicer3 Slicer3 Dashboard (As Of May 2, 2008)]

[http://www.na-mic.org/Slicer3/Dashboard Slicer3 Dashboard (Before May 2, 2008)]

[http://na-mic.org/Mantis/main_page.php Slicer Bug Tracker]

Discussion of slicer3 takes place on the slicer-devel at massmail.spl.harvard.edu list. To join developer's mailing list, send a request to: slicer-devel-request at massmail.spl.harvard.edu with the keyword '''''subscribe''''' as the subject. Or access the [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-devel slicer-devel archives and web administration interface].

== Design Information ==

May 23, 2006: [http://www.na-mic.org/Wiki/index.php/Algorithms:Core1Visit_May06 Algorithm Core workshop.]

April 3, 2006: [[Media:Slicer_3-alpha-2006-04-03.ppt| Slicer 3 alpha]] technical powerpoint presentation.

Slicer3:Developers

2008-11-08T23:16:15Z

Melonakos:

__NOTOC__
= Slicer 3 Developer Page =
This page contains links to Slicer3 developer resources and events.

Click here for [[Slicer3:Events|Slicer3 Events]]

== Slicer 3 Overview ==
[[Image:Slicer3LogoHorizontalBeta.png]]

* For more details on the slicer architecture see: [[media:Slicer 3-beta-2007-04-16.ppt | Architecture Slides]] (updated April, 2007).
 

<gallery caption="Highlights of the new architecture" widths="200px" perrow="4">
Image:Slicer3-Architecture.jpg
Image:Slicer3-Architecture-MRML.jpg
Image:Slicer3-Architecture-Layers.jpg
Image:ExecutionModelPlugins.png
</gallery>

== Information for Developers ==
This section centrally locates many existing (and developing) wiki pages useful to Slicer3 developers. The content developed for the January 2007 AHM.

=== Introduction to Slicer3 ===
* [[Media:SlicerHistoricalTimeline.ppt | Slicer3 Historical Timeline]]
* [[Slicer3:Status_Summary | Status overview]] and [http://slicerl.bwh.harvard.edu/tmp/slicer3-PreAHMBeta%20Demo/slicer3-PreAHMBeta.htm Demo]
* [[Media:GUIMap.png|Schematic of application interface & functionality]]
* [[Media:SliceGUI.png|Schematic of slice GUI]]
* [[Slicer3:Build_Instructions | Getting the software and troubleshooting]]
* [[media:Slicer 3-beta-2007-01-10.ppt | Overall Architecture]] and [[Slicer3:Style|Slicer 3 Coding Style]]
* [[Slicer3:Contributing_codes_to_Slicer3| Contributing codes to Slicer3]]

=== Two module types (Command line and Interactive) ===
* [[Slicer3:Execution_Model_Documentation | Command line modules and how to implement one]] (Jim and Bill) [[media:Slicer3-ExecutionModelJune2006.ppt| Intro]]
*[[Slicer3:How_to_implement_an_Interactive_Module_GUI | How to implement an interactive module]] (wjp)

=== MRML [http://www.na-mic.org/Wiki/images/e/e3/Slicer3_MRML.ppt MRML Slides](Alex) ===
Medical Reality Modeling Language (MRML) is a language implemented as a type of XML document, with new tags defined to handle medical image data types such as volumes, models or coordinate transforms.

* [[Slicer3:Data_Model#Creating_Custom_MRML_Node_Classes | Creating and using new MRML node types]] (Alex)
* [[Slicer3:Data_Model#References_to_MRML_Nodes | Keeping references to MRML nodes ]] (Alex)
* [[Slicer3:Data_Model#Undo/Redo_Mechanism | How undo/redo works, and how to enable it in your code]] (Alex)

=== GUI ===
* [[Slicer3:StatelessGUI | Keeping the GUI stateless]] (wjp)
* [[Slicer3:EventBindings | Adding keyboard shortcuts]] (wjp)
* [[Slicer3:Human_Interface_and_Style_Guide_for_Developers | GUI style guidelines]] (wjp)
* [[Slicer3:Usability#User-centered_design_practice_for_3DSlicer | User-centered design practice]] (wjp)
* [[Slicer3:Slicer3Brand | 3DSlicer's logo and visual communication guidelines]] (wjp)
* [[Slicer3:Execution_Model_Documentation#Adding_Module_Logos_to_Slicer3 | Incorporating your group's logo and attributions]] (Jim)
* [[Slicer3:GUI_Experiments | Some experiments/advanced techniques for developing slicer3 interfaces]] (Steve)

=== Engineering ===
* Tips for avoiding memory leaks
** Current Practice (Steve)
** [[Slicer3:Memory Management | Suggested change to SmartPointers]] (Jim)
* Generating tests (Bill)
* [[Slicer3:Testing | Setting up Testing]]
* [[Slicer3:Builds | Build Information]]
* [[Slicer3:Launcher| The Launcher]]

=== Documenting your module ===
* As soon as the wiki page template is finalized, and the infrastructure is added to link to this wiki page from the "Help & Acknowledgment" panel in your module's GUI, we will ask developers to fill out a brief document describing your module and its use. Stay tuned for developments...
* [[Slicer3:DocumentationWink|Documenting a module with wink]]

=== Integrate Slicer3 into a development environment ===
* [[Slicer3::Eclipse | Eclipse]] (keilhack)
* [[Slicer3::MSVS200X | Microsoft Visual Studio 200x]]

== Slicer 3 Projects ==

Projects should correspond to the outstanding issues listed on the '''[[Slicer3:Status_Summary|Status Summary]]'''. Please refer to the '''[[Slicer3:FeatureRequests|Feature Requests]]''' from users when planning your implementations.

''If your name is in bold, you are responsible for that aspect of the project''

* '''[[Slicer3:Architecture/Features|Architecture/Features]]''' ('''Steve Pieper''', Group: Bill Lorensen, Ron Kikinis, Mike Halle, Noby Hata)
* '''[[Slicer3:Data_Model|Data Model / libMRML]]''' ('''Alex''', Steve)
* '''[[Slicer3:Execution_Model|Execution Model / Command Line Modules]]''' ('''Jim Miller''', Bill Lorensen)
* '''[[Slicer3:Interface_Design|Interface Design and Usability ]]''' ('''Wendy Plesniak''', KWWidgets: Sebastien Barre, Yumin Yuan)
* '''[[Slicer3:Transition_of_Slicer2.x_Modules|Transition of Selected Slicer2.x Modules to Slicer3]]''' ('''Nicole''', Katie, Wendy, Mathieu)
** [[Slicer3:DTMRI|DTMRI]]<nowiki>: </nowiki>'''Alex''' with help from Diffusion Images: '''Raul''', Tractography: '''Lauren''' [http://lmi.bwh.harvard.edu LMI]
** [[Slicer3:Editor|Editor]]<nowiki>: </nowiki>'''Steve'''
** [[Slicer3:ColorsFiducialsFreesurferModelmaker|Colors, Fiducials, FreeSurfer, ModelMaker]]<nowiki>: </nowiki>'''Nicole'''
** [[Slicer3:_Image_Guided_Therapy_%28IGT%29|IGT, Trackers]]<nowiki>: </nowiki>'''Haiying'''
** [[Slicer3:EM|EMSegment Interface]]<nowiki>: </nowiki>'''Brad Davis'''
** [[Slicer3:Slicer_Daemon|SlicerDaemon Interface (for unu, matlab)]]<nowiki>: </nowiki>'''Steve Pieper'''
* '''[[Slicer3:Build/Test/Deploy|Build/Test/Deploy System]]''' ('''Andy''', Katie)
* '''[[Slicer3:Pipeline_Integration|Loni Pipeline Integration]]''' ('''Jags''')
* '''[[Slicer3:Batchmake_Integration|Batchmake/GRID Integration]]''' ('''Julien Jomier''')
* '''[[Slicer3:Registration|Registration Modules]]''' ('''Jim Miller''', Steve Pieper)
* '''[http://www.na-mic.org/Wiki/index.php/ITK_Registration_Optimization Improvements to the registration framework]''' ('''Stephen Aylward''')
* '''[[Slicer3:Python|Python Integration]]''' ('''Dan Blezek''')
* '''[[Slicer3:Grid_Interface|Grid Integration]]''' ('''Jeff Grethe''', Neil)
* '''[[Slicer3:Performance_Analysis|Slicer3:Performance Analysis]]''' ('''Katie''')
* '''[[Slicer3:ThreadingToolKit|Threading ToolKit]]''' ('''Dan Blezek, James Miller, Stephen Aylward''')
* '''[[Slicer3:Volume Rendering |Volume Rendering]]''' ('''Andy''')
* '''[[Slicer3:Volume Rendering With Cuda|Volume Rendering With CUDA]]''' ('''Ben''')
* '''[[Slicer3:XNAT |XNAT Interface]]''' ('''Steve''', Wendy, Dan Marcus, Tim Olsen)
* '''[[Slicer3:LDDMM |LDDMM Interface]]''' ('''Steve''', Anthony Kolasny)
* '''[[Slicer3:Web Presence |Web Presence]]''' ('''Nicole Aucoin'''), Zack Galbreath
* '''[[Slicer3:Loadable Modules |Loadable Modules]]''' ('''Alex Yarmarkovich'''), Steve Pieper
* '''[http://www.slicer.org/slicerWiki/index.php/Modules:Volumes:Diffusion_Editor-Documentation Diffusion Editor]''' ('''Kerstin''')
* '''[[Slicer3:TimeSeries and Multi-Volume Data | TimeSeries and Multi-Volume Data]]''' (Steve Pieper, Daniel Blezek, Dominik Meier, Wendy Plesniak)
* '''[[Slicer3:Remote Data Handling | Remote Data Handling]]''' (Steve Pieper, Nicole Aucoin, Wendy Plesniak)
* '''[[Slicer3:Module:QueryAtlas |Query Atlas]]''' ('''Wendy Plesniak''')
* '''[[Slicer3:MistSlicer | MistSlicer]]''' ('''Yuichiro Hayashi''', Kensaku Mori, Nobuhiko Hata)

== Slicer 3 Quick links to the Source code ==

The Slicer3 svn repository:

svn co http://svn.slicer.org/Slicer3/trunk Slicer3

Use [http://viewvc.slicer.org ViewVC to browse the repository]

[http://www.na-mic.org/Wiki/index.php/Engineering:SandBox Instructions for NA-MIC svn]

[[Slicer3:Build_Instructions|Slicer3 build instructions]]

[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Doxygen documentation for Slicer3].

The [[Slicer3:VisualBlog|Slicer3 VisualBlog]] shows screenshots of slicer developments.

Developers should follow the [[Slicer3:Style|Slicer 3 Coding Style]].

[http://www.cdash.org/CDash/index.php?project=Slicer3 Slicer3 Dashboard (As Of May 2, 2008)]

[http://www.na-mic.org/Slicer3/Dashboard Slicer3 Dashboard (Before May 2, 2008)]

[http://na-mic.org/Mantis/main_page.php Slicer Bug Tracker]

Discussion of slicer3 takes place on the slicer-devel at massmail.spl.harvard.edu list. To join developer's mailing list, send a request to: slicer-devel-request at massmail.spl.harvard.edu with the keyword '''''subscribe''''' as the subject. Or access the [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-devel slicer-devel archives and web administration interface].

== Design Information ==

May 23, 2006: [http://www.na-mic.org/Wiki/index.php/Algorithms:Core1Visit_May06 Algorithm Core workshop.]

April 3, 2006: [[Media:Slicer_3-alpha-2006-04-03.ppt| Slicer 3 alpha]] technical powerpoint presentation.

Slicer3:Events

2008-11-08T23:13:43Z

Melonakos:

__NOTOC__
= Slicer3 Events =

== Upcoming ==

=== Slicer3.0 ===

* the first product release of Slicer3 is scheduled for the AHM in January of 2008
* there will be a code freeze on Nov. 15 2007
** if you want your module to be part of Slicer3.0 submit it by then
** After that date, we will only accept bug fixes. It means that there will be no features added after the freeze in the main trunk.
** Anyone working on new features can do so in their own branch and they will be responsible for merging these back into the trunk after the freeze is lifted (at which point the release will be in a maintenance branch).

== Retrospective ==

=== Slicer 3 Snapshot Builds ===

* Initial releases began end of March 2007
** Base code functional and usable
** Several usable modules include (auto segmentaiton, editor, registration...)
** Image Guided Therapy example modules
* Updated versions summer 2007
** With DTI and other application modules
** Bug fixes and performance enhancements

=== Migration Tutorials (from Slicer 2.x to 3.0) ===

The first set of user tutorials will be released in Fall 2007.
Slicer3 programming courses will be released in January 2008.

== Past ==

=== Slicer3.0 Beta ===

* Official release at [http://www.na-mic.org/Wiki/index.php/AHM_2007 AHM January 2007]

=== April 3, 2006 ===

There was a [[Slicer3:_Alpha1_Meeting|Slicer3 Alpha1 Design Review]] meeting.

'''[[Slicer3:Alpha|Definition of Alpha Milestone]]'''

=== Slicer3 Alpha2/Beta1 by End of July 2006 ===

* Initial Testing with Core 3 participation
* Base functionality in place, but still subject to API changes and other improvements.
* Packaged versions not yet available, but testers are able to easily build their own versions.

=== Implementation of Slicer3 Alpha1 by end of March 2006 ===

Slicer3:Events

2008-11-08T23:13:31Z

Melonakos: New page: = Slicer3 Events = == Upcoming == === Slicer3.0 === * the first product release of Slicer3 is scheduled for the AHM in January of 2008 * there will be a code freeze on Nov. 15 2007 ** i...

= Slicer3 Events =

== Upcoming ==

=== Slicer3.0 ===

* the first product release of Slicer3 is scheduled for the AHM in January of 2008
* there will be a code freeze on Nov. 15 2007
** if you want your module to be part of Slicer3.0 submit it by then
** After that date, we will only accept bug fixes. It means that there will be no features added after the freeze in the main trunk.
** Anyone working on new features can do so in their own branch and they will be responsible for merging these back into the trunk after the freeze is lifted (at which point the release will be in a maintenance branch).

== Retrospective ==

=== Slicer 3 Snapshot Builds ===

* Initial releases began end of March 2007
** Base code functional and usable
** Several usable modules include (auto segmentaiton, editor, registration...)
** Image Guided Therapy example modules
* Updated versions summer 2007
** With DTI and other application modules
** Bug fixes and performance enhancements

=== Migration Tutorials (from Slicer 2.x to 3.0) ===

The first set of user tutorials will be released in Fall 2007.
Slicer3 programming courses will be released in January 2008.

== Past ==

=== Slicer3.0 Beta ===

* Official release at [http://www.na-mic.org/Wiki/index.php/AHM_2007 AHM January 2007]

=== April 3, 2006 ===

There was a [[Slicer3:_Alpha1_Meeting|Slicer3 Alpha1 Design Review]] meeting.

'''[[Slicer3:Alpha|Definition of Alpha Milestone]]'''

=== Slicer3 Alpha2/Beta1 by End of July 2006 ===

* Initial Testing with Core 3 participation
* Base functionality in place, but still subject to API changes and other improvements.
* Packaged versions not yet available, but testers are able to easily build their own versions.

=== Implementation of Slicer3 Alpha1 by end of March 2006 ===

Slicer3:Developers

2008-11-08T23:12:35Z

Melonakos: /* Events */

== Slicer 3 Overview ==
[[Image:Slicer3LogoHorizontalBeta.png]]

* For more details on the slicer architecture see: [[media:Slicer 3-beta-2007-04-16.ppt | Architecture Slides]] (updated April, 2007).
 

<gallery caption="Highlights of the new architecture" widths="200px" perrow="4">
Image:Slicer3-Architecture.jpg
Image:Slicer3-Architecture-MRML.jpg
Image:Slicer3-Architecture-Layers.jpg
Image:ExecutionModelPlugins.png
</gallery>

== Information for Developers ==
This section centrally locates many existing (and developing) wiki pages useful to Slicer3 developers. The content developed for the January 2007 AHM.

=== Introduction to Slicer3 ===
* [[Media:SlicerHistoricalTimeline.ppt | Slicer3 Historical Timeline]]
* [[Slicer3:Status_Summary | Status overview]] and [http://slicerl.bwh.harvard.edu/tmp/slicer3-PreAHMBeta%20Demo/slicer3-PreAHMBeta.htm Demo]
* [[Media:GUIMap.png|Schematic of application interface & functionality]]
* [[Media:SliceGUI.png|Schematic of slice GUI]]
* [[Slicer3:Build_Instructions | Getting the software and troubleshooting]]
* [[media:Slicer 3-beta-2007-01-10.ppt | Overall Architecture]] and [[Slicer3:Style|Slicer 3 Coding Style]]
* [[Slicer3:Contributing_codes_to_Slicer3| Contributing codes to Slicer3]]

=== Two module types (Command line and Interactive) ===
* [[Slicer3:Execution_Model_Documentation | Command line modules and how to implement one]] (Jim and Bill) [[media:Slicer3-ExecutionModelJune2006.ppt| Intro]]
*[[Slicer3:How_to_implement_an_Interactive_Module_GUI | How to implement an interactive module]] (wjp)

=== MRML [http://www.na-mic.org/Wiki/images/e/e3/Slicer3_MRML.ppt MRML Slides](Alex) ===
Medical Reality Modeling Language (MRML) is a language implemented as a type of XML document, with new tags defined to handle medical image data types such as volumes, models or coordinate transforms.

* [[Slicer3:Data_Model#Creating_Custom_MRML_Node_Classes | Creating and using new MRML node types]] (Alex)
* [[Slicer3:Data_Model#References_to_MRML_Nodes | Keeping references to MRML nodes ]] (Alex)
* [[Slicer3:Data_Model#Undo/Redo_Mechanism | How undo/redo works, and how to enable it in your code]] (Alex)

=== GUI ===
* [[Slicer3:StatelessGUI | Keeping the GUI stateless]] (wjp)
* [[Slicer3:EventBindings | Adding keyboard shortcuts]] (wjp)
* [[Slicer3:Human_Interface_and_Style_Guide_for_Developers | GUI style guidelines]] (wjp)
* [[Slicer3:Usability#User-centered_design_practice_for_3DSlicer | User-centered design practice]] (wjp)
* [[Slicer3:Slicer3Brand | 3DSlicer's logo and visual communication guidelines]] (wjp)
* [[Slicer3:Execution_Model_Documentation#Adding_Module_Logos_to_Slicer3 | Incorporating your group's logo and attributions]] (Jim)
* [[Slicer3:GUI_Experiments | Some experiments/advanced techniques for developing slicer3 interfaces]] (Steve)

=== Engineering ===
* Tips for avoiding memory leaks
** Current Practice (Steve)
** [[Slicer3:Memory Management | Suggested change to SmartPointers]] (Jim)
* Generating tests (Bill)
* [[Slicer3:Testing | Setting up Testing]]
* [[Slicer3:Builds | Build Information]]
* [[Slicer3:Launcher| The Launcher]]

=== Documenting your module ===
* As soon as the wiki page template is finalized, and the infrastructure is added to link to this wiki page from the "Help & Acknowledgment" panel in your module's GUI, we will ask developers to fill out a brief document describing your module and its use. Stay tuned for developments...
* [[Slicer3:DocumentationWink|Documenting a module with wink]]

=== Integrate Slicer3 into a development environment ===
* [[Slicer3::Eclipse | Eclipse]] (keilhack)
* [[Slicer3::MSVS200X | Microsoft Visual Studio 200x]]

== Slicer 3 Projects ==

Projects should correspond to the outstanding issues listed on the '''[[Slicer3:Status_Summary|Status Summary]]'''. Please refer to the '''[[Slicer3:FeatureRequests|Feature Requests]]''' from users when planning your implementations.

''If your name is in bold, you are responsible for that aspect of the project''

* '''[[Slicer3:Architecture/Features|Architecture/Features]]''' ('''Steve Pieper''', Group: Bill Lorensen, Ron Kikinis, Mike Halle, Noby Hata)
* '''[[Slicer3:Data_Model|Data Model / libMRML]]''' ('''Alex''', Steve)
* '''[[Slicer3:Execution_Model|Execution Model / Command Line Modules]]''' ('''Jim Miller''', Bill Lorensen)
* '''[[Slicer3:Interface_Design|Interface Design and Usability ]]''' ('''Wendy Plesniak''', KWWidgets: Sebastien Barre, Yumin Yuan)
* '''[[Slicer3:Transition_of_Slicer2.x_Modules|Transition of Selected Slicer2.x Modules to Slicer3]]''' ('''Nicole''', Katie, Wendy, Mathieu)
** [[Slicer3:DTMRI|DTMRI]]<nowiki>: </nowiki>'''Alex''' with help from Diffusion Images: '''Raul''', Tractography: '''Lauren''' [http://lmi.bwh.harvard.edu LMI]
** [[Slicer3:Editor|Editor]]<nowiki>: </nowiki>'''Steve'''
** [[Slicer3:ColorsFiducialsFreesurferModelmaker|Colors, Fiducials, FreeSurfer, ModelMaker]]<nowiki>: </nowiki>'''Nicole'''
** [[Slicer3:_Image_Guided_Therapy_%28IGT%29|IGT, Trackers]]<nowiki>: </nowiki>'''Haiying'''
** [[Slicer3:EM|EMSegment Interface]]<nowiki>: </nowiki>'''Brad Davis'''
** [[Slicer3:Slicer_Daemon|SlicerDaemon Interface (for unu, matlab)]]<nowiki>: </nowiki>'''Steve Pieper'''
* '''[[Slicer3:Build/Test/Deploy|Build/Test/Deploy System]]''' ('''Andy''', Katie)
* '''[[Slicer3:Pipeline_Integration|Loni Pipeline Integration]]''' ('''Jags''')
* '''[[Slicer3:Batchmake_Integration|Batchmake/GRID Integration]]''' ('''Julien Jomier''')
* '''[[Slicer3:Registration|Registration Modules]]''' ('''Jim Miller''', Steve Pieper)
* '''[http://www.na-mic.org/Wiki/index.php/ITK_Registration_Optimization Improvements to the registration framework]''' ('''Stephen Aylward''')
* '''[[Slicer3:Python|Python Integration]]''' ('''Dan Blezek''')
* '''[[Slicer3:Grid_Interface|Grid Integration]]''' ('''Jeff Grethe''', Neil)
* '''[[Slicer3:Performance_Analysis|Slicer3:Performance Analysis]]''' ('''Katie''')
* '''[[Slicer3:ThreadingToolKit|Threading ToolKit]]''' ('''Dan Blezek, James Miller, Stephen Aylward''')
* '''[[Slicer3:Volume Rendering |Volume Rendering]]''' ('''Andy''')
* '''[[Slicer3:Volume Rendering With Cuda|Volume Rendering With CUDA]]''' ('''Ben''')
* '''[[Slicer3:XNAT |XNAT Interface]]''' ('''Steve''', Wendy, Dan Marcus, Tim Olsen)
* '''[[Slicer3:LDDMM |LDDMM Interface]]''' ('''Steve''', Anthony Kolasny)
* '''[[Slicer3:Web Presence |Web Presence]]''' ('''Nicole Aucoin'''), Zack Galbreath
* '''[[Slicer3:Loadable Modules |Loadable Modules]]''' ('''Alex Yarmarkovich'''), Steve Pieper
* '''[http://www.slicer.org/slicerWiki/index.php/Modules:Volumes:Diffusion_Editor-Documentation Diffusion Editor]''' ('''Kerstin''')
* '''[[Slicer3:TimeSeries and Multi-Volume Data | TimeSeries and Multi-Volume Data]]''' (Steve Pieper, Daniel Blezek, Dominik Meier, Wendy Plesniak)
* '''[[Slicer3:Remote Data Handling | Remote Data Handling]]''' (Steve Pieper, Nicole Aucoin, Wendy Plesniak)
* '''[[Slicer3:Module:QueryAtlas |Query Atlas]]''' ('''Wendy Plesniak''')
* '''[[Slicer3:MistSlicer | MistSlicer]]''' ('''Yuichiro Hayashi''', Kensaku Mori, Nobuhiko Hata)

== Slicer 3 Quick links to the Source code ==

The Slicer3 svn repository:

svn co http://svn.slicer.org/Slicer3/trunk Slicer3

Use [http://viewvc.slicer.org ViewVC to browse the repository]

[http://www.na-mic.org/Wiki/index.php/Engineering:SandBox Instructions for NA-MIC svn]

[[Slicer3:Build_Instructions|Slicer3 build instructions]]

[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Doxygen documentation for Slicer3].

The [[Slicer3:VisualBlog|Slicer3 VisualBlog]] shows screenshots of slicer developments.

Developers should follow the [[Slicer3:Style|Slicer 3 Coding Style]].

[http://www.cdash.org/CDash/index.php?project=Slicer3 Slicer3 Dashboard (As Of May 2, 2008)]

[http://www.na-mic.org/Slicer3/Dashboard Slicer3 Dashboard (Before May 2, 2008)]

[http://na-mic.org/Mantis/main_page.php Slicer Bug Tracker]

Discussion of slicer3 takes place on the slicer-devel at massmail.spl.harvard.edu list. To join developer's mailing list, send a request to: slicer-devel-request at massmail.spl.harvard.edu with the keyword '''''subscribe''''' as the subject. Or access the [http://massmail.spl.harvard.edu/mailman/listinfo/slicer-devel slicer-devel archives and web administration interface].

== Design Information ==

May 23, 2006: [http://www.na-mic.org/Wiki/index.php/Algorithms:Core1Visit_May06 Algorithm Core workshop.]

April 3, 2006: [[Media:Slicer_3-alpha-2006-04-03.ppt| Slicer 3 alpha]] technical powerpoint presentation.

Special:Badtitle/NS100:OldDownloads

2008-11-08T23:03:15Z

Melonakos:

__NOTOC__
= Slicer Downloads =

This is the download page for compiled versions of the 3D Slicer software.

== License Agreement ==
Please fill out the '''[http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl Slicer License Form]''' before downloading any binary releases of Slicer.

== Downloads ==
{| border="00" cellpadding="5" cellspacing="0"
|-
| rowspan="2"|
'''Hardware/OS requirement''': Either Windows XP or more recent, Linux (x86 or x86_64), Mac OS X (ppc or Intel), min 2 GB of RAM and a dedicated graphic accelerator with at least 128 MB of on-board graphic memory. Shared memory graphics will result in slow render speeds.

=== Recommended Stable Slicer Releases ===
[http://www.slicer.org/DownloadSlicer.php/Release https://slicer.spl.harvard.edu/slicerWiki/images/thumb/9/94/Download_button.png/100px-Download_button.png] '''[http://www.slicer.org/DownloadSlicer.php/Release Stable Release Download]''': Pre-compiled stable Slicer Releases for Linux, Windows, Mac and Solaris (this is where you find '''Slicer 3.2''' pre-compiled versions for supported platforms).

=== Bleeding Edge Slicer Releases ===
*''[http://www.slicer.org/DownloadSlicer.php/Snapshots Snapshots]'': Custom built Slicer binaries, in various states of completion
*''[http://www.slicer.org/DownloadSlicer.php/Nightly Nightly]'': This page contains a week's worth of nightly builds

| style="background: #dddddd" colspan="2" align="center"| Slicer Download Statistics 
([http://wiki.slicer.org/slicerWiki/index.php?title=Projects/slicerWeb:Downloads#Download_Statistics live version at the bottom of this page])
|-
| style="background: #ebeced"|[[Image:SlicerDownloadsSeptember2008.png|center|300px]]
|}

== Training ==
Training materials on how to use 3D Slicer.
*[http://wiki.na-mic.org/Wiki/index.php/Slicer3.2:Training '''Slicer 3''']
*[http://wiki.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101 '''Slicer 2''']

== Other Resources ==
*'''[http://www.na-mic.org/Bug/login_page.php Mantis Tracker]''': Report bugs and make feature requests here.
*'''[http://public.kitware.com/dashboard.php?name=slicer3 Slicer Dashboard]''': Information about the nightly builds.
*'''[[Projects/slicerWeb:SourceCode|Source Code]]''': This page points to the source code repositories.
*'''[http://slicer.org/pages/Mailinglist Slicer mailing lists]''': This page contains points to the Slicer user and developers mailing lists.
*'''X11 for Mac''': On Mac OS X you need X11 installed. We had good experience with [http://xquartz.macosforge.org/trac/wiki xquartz].

== Download Statistics ==
* See [http://slicer.org/pages/Special:Download_Stats '''here'''] for 3D Slicer download statistics.

File:Download button.png

2008-11-08T22:52:54Z

Melonakos:

Special:Badtitle/NS100:UserOrientation

2008-11-08T20:31:04Z

Melonakos:

__NOTOC__
=Slicer User Orientation=

Slicer is an open-source software application for computer scientists and clinical researchers.

The platform provides functionality for segmentation, registration and three-dimensional visualization of multi-modal image data, as well as advanced image analysis algorithms for diffusion tensor imaging, functional magnetic resonance imaging and image-guided therapy. Standard image file formats are supported, and the application integrates interface capabilities to biomedical research software and image informatics frameworks.

Slicer is available for Linux, Mac, and Windows.

[[Image:Tharin_Neurosurgery.jpg|thumb|right|250 px|A coronal brain slice with super-imposed diffusion tensor tractography to show alteration in the arrangement of the tracts around a tumor. See [http://slicer.org/pages/Special:PubDB_View?dspaceid=327 Tharin et al Neurosurgery 2007] for more info.]]

== Get Slicer ==
*Slicer is free open source software and is distributed under a BSD license. Please fill out our license form, if you use Slicer [http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl Slicer license form].
*Compiled binaries are accessible through the [[Projects/slicerWeb:Downloads| Slicer Downloads]] page.

== Training and Documentation ==
The [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training Slicer3 Training page] provides a series of courses for learning how to use Slicer3. The portfolio contains self-guided presentation and sample data sets

Reference manual style [http://www.slicer.org/slicerWiki/index.php/Documentation documentation] for Slicer3 can be found on the Slicer Wiki.

== Support ==
Feature requests and bug reports can be posted on the [http://www.na-mic.org/Bug/main_page.php Slicer bug tracker] page.

Please contact the [http://www.slicer.org/pages/Mailinglist Slicer Users mailing list] for questions related to the software, archives of slicer-users and subscription management tools.

== Quick Links ==
{|align="left"
|-
|style="background:#ddf"| '''Slicer 3.x''' (Current development version)
|style="background:#ddf"| Quick Links
|-
|Slicer3 License
|[http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl Slicer3 license form]
|-
|Slicer3 Download
|[[Projects/slicerWeb:Downloads| Slicer3 Downloads]]
|-
|Slicer3 Training
|[http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training Slicer3 Training page]
|-
|Slicer3 Reference Manual Documentation
|[http://www.slicer.org/slicerWiki/index.php/Documentation Reference Manual Documentation]
|-
|Slicer3 Bug Tracking
|[http://www.na-mic.org/Bug/main_page.php Slicer bug tracker]
|-
|Slicer3 Mailing Lists
|[http://www.slicer.org/pages/Mailinglist Slicer Users mailing list]
|}

===[[DeveloperOrientation:Developer_information_Slicer 2.6|Legacy information about Slicer 2.6]]===

Special:Badtitle/NS100:OldDownloads

2008-11-08T20:30:04Z

Melonakos:

__NOTOC__
= Slicer Downloads =

This is the download page for compiled versions of the 3D Slicer software.

== License Agreement ==
Please fill out the '''[http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl Slicer License Form]''' before downloading any binary releases of Slicer.

== Downloads ==
{| border="00" cellpadding="5" cellspacing="0"
|-
| rowspan="2"|
'''Hardware/OS requirement''': Either Windows XP or more recent, Linux (x86 or x86_64), Mac OS X (ppc or Intel), min 2 GB of RAM and a dedicated graphic accelerator with at least 128 MB of on-board graphic memory. Shared memory graphics will result in slow render speeds.

=== Recommended Stable Slicer Releases ===
*'''[http://www.slicer.org/DownloadSlicer.php/Release Stable releases]''': Pre-compiled stable Slicer Releases for Linux, Windows, Mac and Solaris (this is where you find '''Slicer 3.2''' pre-compiled versions for supported platforms).

=== Bleeding Edge Slicer Releases ===
*''[http://www.slicer.org/DownloadSlicer.php/Snapshots Snapshots]'': Custom built Slicer binaries, in various states of completion
*''[http://www.slicer.org/DownloadSlicer.php/Nightly Nightly]'': This page contains a week's worth of nightly builds

| style="background: #dddddd" colspan="2" align="center"| Slicer Download Statistics 
([http://wiki.slicer.org/slicerWiki/index.php?title=Projects/slicerWeb:Downloads#Download_Statistics live version at the bottom of this page])
|-
| style="background: #ebeced"|[[Image:SlicerDownloadsSeptember2008.png|center|300px]]
|}

== Training ==
Training materials on how to use 3D Slicer.
*[http://wiki.na-mic.org/Wiki/index.php/Slicer3.2:Training '''Slicer 3''']
*[http://wiki.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101 '''Slicer 2''']

== Other Resources ==
*'''[http://www.na-mic.org/Bug/login_page.php Mantis Tracker]''': Report bugs and make feature requests here.
*'''[http://public.kitware.com/dashboard.php?name=slicer3 Slicer Dashboard]''': Information about the nightly builds.
*'''[[Projects/slicerWeb:SourceCode|Source Code]]''': This page points to the source code repositories.
*'''[http://slicer.org/pages/Mailinglist Slicer mailing lists]''': This page contains points to the Slicer user and developers mailing lists.
*'''X11 for Mac''': On Mac OS X you need X11 installed. We had good experience with [http://xquartz.macosforge.org/trac/wiki xquartz].

== Download Statistics ==
* See [http://slicer.org/pages/Special:Download_Stats '''here'''] for 3D Slicer download statistics.

Special:Badtitle/NS100:UserOrientation

2008-11-08T20:28:52Z

Melonakos:

User:Melonakos

2008-11-08T20:27:51Z

Melonakos: New page: [http://www.melonakos.com John Melonakos]

[http://www.melonakos.com John Melonakos]

Special:Badtitle/NS100:UserOrientation

2008-11-08T20:26:59Z

Melonakos:

__NOTOC__
=Slicer User Orientation=

Slicer is an open-source software application for computer scientists and clinical researchers.

The platform provides functionality for segmentation, registration and three-dimensional visualization of multi-modal image data, as well as advanced image analysis algorithms for diffusion tensor imaging, functional magnetic resonance imaging and image-guided therapy. Standard image file formats are supported, and the application integrates interface capabilities to biomedical research software and image informatics frameworks.

Slicer is available for Linux, Mac, and Windows.

[[Image:Tharin_Neurosurgery.jpg|thumb|right|250 px|A coronal brain slice with super-imposed diffusion tensor tractography to show alteration in the arrangement of the tracts around a tumor. See [http://slicer.org/pages/Special:PubDB_View?dspaceid=327 Tharin et al Neurosurgery 2007] for more info.]]

== Get Slicer ==
*Slicer is free open source software and is distributed under a BSD license. Please fill out our license form, if you use Slicer [http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl Slicer license form].
*Compiled binaries are accessible through the [[Projects/slicerWeb:Downloads| Slicer Downloads]] page.

== Training and Documentation ==
The [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training Slicer3 Training page] provides a series of courses for learning how to use Slicer3. The portfolio contains self-guided presentation and sample data sets

Reference manual style [http://www.slicer.org/slicerWiki/index.php/Documentation documentation] for Slicer3 can be found on the Slicer Wiki.

== Support ==
Feature requests and bug reports can be posted on the [http://www.na-mic.org/Bug/main_page.php Slicer bug tracker] page.

Please contact the [http://www.slicer.org/pages/Mailinglist Slicer Users mailing list] for questions related to the software, archives of slicer-users and subscription management tools.

== Quick Links ==
{|align="left"
|-
|style="background:#ddf"| '''Slicer 3.x''' Resource
|style="background:#ddf"| Quick Links
|-
|Slicer3 License
|[http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl Slicer3 license form]
|-
|Slicer3 Download
|[[Projects/slicerWeb:Downloads| Slicer3 Downloads]]
|-
|Slicer3 Training
|[http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training Slicer3 Training page]
|-
|Slicer3 Reference Manual Documentation
|[http://www.slicer.org/slicerWiki/index.php/Documentation Reference Manual Documentation]
|-
|Slicer3 Bug Tracking
|[http://www.na-mic.org/Bug/main_page.php Slicer bug tracker]
|-
|Slicer3 Mailing Lists
|[http://www.slicer.org/pages/Mailinglist Slicer Users mailing list]
|}

Special:Badtitle/NS100:OldDownloads

2008-11-08T20:20:17Z

Melonakos:

__NOTOC__

This is the download page for compiled versions of the 3D Slicer software.

= License Agreement =
Please fill out the '''[http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl Slicer License Form]''' before downloading any binary releases of Slicer.

= Downloads =
{| border="00" cellpadding="5" cellspacing="0"
|-
| rowspan="2"|
'''Hardware/OS requirement''': Either Windows XP or more recent, Linux (x86 or x86_64), Mac OS X (ppc or Intel), min 2 GB of RAM and a dedicated graphic accelerator with at least 128 MB of on-board graphic memory. Shared memory graphics will result in slow render speeds.

== Recommended Stable Slicer Releases ==
*'''[http://www.slicer.org/DownloadSlicer.php/Release Stable releases]''': Pre-compiled stable Slicer Releases for Linux, Windows, Mac and Solaris (this is where you find '''Slicer 3.2''' pre-compiled versions for supported platforms).

== Bleeding Edge Slicer Releases ==
*''[http://www.slicer.org/DownloadSlicer.php/Snapshots Snapshots]'': Custom built Slicer binaries, in various states of completion
*''[http://www.slicer.org/DownloadSlicer.php/Nightly Nightly]'': This page contains a week's worth of nightly builds

| style="background: #dddddd" colspan="2" align="center"| Slicer Download Statistics 
([http://wiki.slicer.org/slicerWiki/index.php?title=Projects/slicerWeb:Downloads#Download_Statistics live version at the bottom of this page])
|-
| style="background: #ebeced"|[[Image:SlicerDownloadsSeptember2008.png|center|300px]]
|}

= Training =
Training materials on how to use 3D Slicer.
*[http://wiki.na-mic.org/Wiki/index.php/Slicer3.2:Training '''Slicer 3''']
*[http://wiki.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101 '''Slicer 2''']

= Other Resources =
*'''[http://www.na-mic.org/Bug/login_page.php Mantis Tracker]''': Report bugs and make feature requests here.
*'''[http://public.kitware.com/dashboard.php?name=slicer3 Slicer Dashboard]''': Information about the nightly builds.
*'''[[Projects/slicerWeb:SourceCode|Source Code]]''': This page points to the source code repositories.
*'''[http://slicer.org/pages/Mailinglist Slicer mailing lists]''': This page contains points to the Slicer user and developers mailing lists.
*'''X11 for Mac''': On Mac OS X you need X11 installed. We had good experience with [http://xquartz.macosforge.org/trac/wiki xquartz].

= Download Statistics =
* See [http://slicer.org/pages/Special:Download_Stats '''here'''] for 3D Slicer download statistics.

Special:Badtitle/NS100:OldDownloads

2008-11-08T20:18:47Z

Melonakos:

__NOTOC__

This is the download page for compiled versions of the 3D Slicer software.

= License Agreement =

Please fill out the '''[http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl Slicer License Form]''' before downloading any binary releases of Slicer.

= Downloads =

{| border="00" cellpadding="5" cellspacing="0"
|-
| rowspan="2"|
'''Hardware/OS requirement''': Either Windows XP or more recent, Linux (x86 or x86_64), Mac OS X (ppc or Intel), min 2 GB of RAM and a dedicated graphic accelerator with at least 128 MB of on-board graphic memory. Shared memory graphics will result in slow render speeds.

== Recommended Stable Slicer Releases ==

*'''[http://www.slicer.org/DownloadSlicer.php/Release Stable releases]''': Pre-compiled stable Slicer Releases for Linux, Windows, Mac and Solaris (this is where you find '''Slicer 3.2''' pre-compiled versions for supported platforms).

== Bleeding Edge Slicer Releases ==

*''[http://www.slicer.org/DownloadSlicer.php/Snapshots Snapshots]'': Custom built Slicer binaries, in various states of completion
*''[http://www.slicer.org/DownloadSlicer.php/Nightly Nightly]'': This page contains a week's worth of nightly builds

| style="background: #dddddd" colspan="2" align="center"| Slicer Download Statistics 
([http://wiki.slicer.org/slicerWiki/index.php?title=Projects/slicerWeb:Downloads#Download_Statistics live version at the bottom of this page])
|-
| style="background: #ebeced"|[[Image:SlicerDownloadsSeptember2008.png|center|300px]]
|}
 

= Training =

Training materials on how to use 3D Slicer.
*[http://wiki.na-mic.org/Wiki/index.php/Slicer3.2:Training '''Slicer 3''']
*[http://wiki.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101 '''Slicer 2''']

= Other Resources =

*'''[http://www.na-mic.org/Bug/login_page.php Mantis Tracker]''': Report bugs and make feature requests here.
*'''[http://public.kitware.com/dashboard.php?name=slicer3 Slicer Dashboard]''': Information about the nightly builds.
*'''[[Projects/slicerWeb:SourceCode|Source Code]]''': This page points to the source code repositories.
*'''[http://slicer.org/pages/Mailinglist Slicer mailing lists]''': This page contains points to the Slicer user and developers mailing lists.
*'''X11 for Mac''': On Mac OS X you need X11 installed. We had good experience with [http://xquartz.macosforge.org/trac/wiki xquartz].

= Download Statistics =

* See [http://slicer.org/pages/Special:Download_Stats '''here'''] for 3D Slicer download statistics.

Special:Badtitle/NS100:OldDownloads

2008-11-08T20:18:08Z

Melonakos:

__NOTOC__

This is the download page for compiled versions of the 3D Slicer software.

= License Agreement =

Please fill out the '''[http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl Slicer License Form]''' before downloading any binary releases of Slicer.

= Downloads =
{| border="00" cellpadding="5" cellspacing="0"
|-
| rowspan="2"|
'''Hardware/OS requirement''': Either Windows XP or more recent, Linux (x86 or x86_64), Mac OS X (ppc or Intel), min 2 GB of RAM and a dedicated graphic accelerator with at least 128 MB of on-board graphic memory. Shared memory graphics will result in slow render speeds.

== Recommended Stable Slicer Releases ==
*'''[http://www.slicer.org/DownloadSlicer.php/Release Stable releases]''': Pre-compiled stable Slicer Releases for Linux, Windows, Mac and Solaris (this is where you find '''Slicer 3.2''' pre-compiled versions for supported platforms).

== Bleeding Edge Slicer Releases ==
*''[http://www.slicer.org/DownloadSlicer.php/Snapshots Snapshots]'': Custom built Slicer binaries, in various states of completion
*''[http://www.slicer.org/DownloadSlicer.php/Nightly Nightly]'': This page contains a week's worth of nightly builds

| style="background: #dddddd" colspan="2" align="center"| Slicer Download Statistics 
([http://wiki.slicer.org/slicerWiki/index.php?title=Projects/slicerWeb:Downloads#Download_Statistics live version at the bottom of this page])
|-
| style="background: #ebeced"|[[Image:SlicerDownloadsSeptember2008.png|center|300px]]
|}
 

= Training =
Training materials on how to use 3D Slicer.
*[http://wiki.na-mic.org/Wiki/index.php/Slicer3.2:Training '''Slicer 3''']
*[http://wiki.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101 '''Slicer 2''']

= Other Resources =
*'''[http://www.na-mic.org/Bug/login_page.php Mantis Tracker]''': Report bugs and make feature requests here.
*'''[http://public.kitware.com/dashboard.php?name=slicer3 Slicer Dashboard]''': Information about the nightly builds.
*'''[[Projects/slicerWeb:SourceCode|Source Code]]''': This page points to the source code repositories.
*'''[http://slicer.org/pages/Mailinglist Slicer mailing lists]''': This page contains points to the Slicer user and developers mailing lists.
*'''X11 for Mac''': On Mac OS X you need X11 installed. We had good experience with [http://xquartz.macosforge.org/trac/wiki xquartz].

= Download Statistics =
* See [http://slicer.org/pages/Special:Download_Stats '''here'''] for 3D Slicer download statistics.

Special:Badtitle/NS100:OldDownloads

2008-11-08T20:16:30Z

Melonakos:

__NOTOC__

This is the download page for compiled versions of the 3D Slicer software.

= License Agreement =

Please fill out the '''[http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl Slicer License Form]''' before downloading any binary releases of Slicer.

= Downloads =
{| border="00" cellpadding="5" cellspacing="0"
|-
| rowspan="2"|
'''Hardware/OS requirement''': Either Windows XP or more recent, Linux (x86 or x86_64), Mac OS X (ppc or Intel), min 2 GB of RAM and a dedicated graphic accelerator with at least 128 MB of on-board graphic memory. Shared memory graphics will result in slow render speeds.

== Recommended Stable Slicer Releases ==
*'''[http://www.slicer.org/DownloadSlicer.php/Release Stable releases]''': Pre-compiled stable Slicer Releases for Linux, Windows, Mac and Solaris (this is where you find '''Slicer 3.2''' pre-compiled versions for supported platforms).

== Bleeding Edge Slicer Releases ==
*''[http://www.slicer.org/DownloadSlicer.php/Snapshots Snapshots]'': Custom built Slicer binaries, in various states of completion
*''[http://www.slicer.org/DownloadSlicer.php/Nightly Nightly]'': This page contains a week's worth of nightly builds

| style="background: #dddddd" colspan="2" align="center"| Slicer Download Statistics 
([http://wiki.slicer.org/slicerWiki/index.php?title=Projects/slicerWeb:Downloads#Download_Statistics live version at the bottom of this page])
|-
| style="background: #ebeced"|[[Image:SlicerDownloadsSeptember2008.png|center|300px]]
|}
 

=Resources=
*'''[http://www.na-mic.org/Bug/login_page.php Mantis Tracker]''': Report bugs and make feature requests here.
*'''[http://public.kitware.com/dashboard.php?name=slicer3 Slicer Dashboard]''': Information about the nightly builds.
*'''[[Projects/slicerWeb:SourceCode|Source Code]]''': This page points to the source code repositories.
*'''[http://slicer.org/pages/Mailinglist Slicer mailing lists]''': This page contains points to the Slicer user and developers mailing lists.
*'''X11 for Mac''': On Mac OS X you need X11 installed. We had good experience with [http://xquartz.macosforge.org/trac/wiki xquartz].
== Training ==
Training materials on how to use 3D Slicer.
*[http://wiki.na-mic.org/Wiki/index.php/Slicer3.2:Training '''Slicer 3''']
*[http://wiki.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101 '''Slicer 2''']
==Download Statistics==
* See [http://slicer.org/pages/Special:Download_Stats '''here'''] for 3D Slicer download statistics.

Special:Badtitle/NS100:Slicer4Industry

2008-11-08T19:38:41Z

Melonakos:

= Commercial Use =

We invite commercial entities to use 3D Slicer.

== Slicer's License makes Commercial Use Available ==

* 3D Slicer is a Free Open Source Software distributed under a BSD style license.
* The license does not impose restrictions on the use of the software.
* 3D Slicer is NOT FDA approved. It is the users responsibility to ensure compliance with applicable rules and regulations.
* For details, please see the full [http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl license].

== Examples of Slicer-Based Projects in Real Settings ==

[[Image:Fedorov-Supercomputing2006-fig3.png|thumb|left|350px|Toward Real-Time Image Guided Neurosurgery Using Distributed and Grid Computing. See [http://www.slicer.org/pages/Special:PubDB_View?dspaceid=44 Chrisochoides et al IEEE Conference on Supercomputing 2006] for more info.]]

Special:Badtitle/NS100:Slicer4Industry

2008-11-08T19:24:39Z

Melonakos:

= Commercial Use =

[[Image:Fedorov-Supercomputing2006-fig3.png|thumb|right|350px|Toward Real-Time Image Guided Neurosurgery Using Distributed and Grid Computing. See [http://www.slicer.org/pages/Special:PubDB_View?dspaceid=44 Chrisochoides et al IEEE Conference on Supercomputing 2006] for more info.]]

We invite commercial entities to use 3D Slicer. Highlights from the license:

* 3D Slicer is a Free Open Source Software distributed under a BSD style license.
* The license does not impose restrictions on the use of the software.
* 3D Slicer is NOT FDA approved. It is the users responsibility to ensure compliance with applicable rules and regulations.
* For details, please see the full [http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl license].

Special:Badtitle/NS100:Slicer4Industry

2008-11-08T19:21:14Z

Melonakos:

= Commercial Use =

We invite commercial entities to use 3D Slicer. Highlights from the license:

* 3D Slicer is a Free Open Source Software distributed under a BSD style license.
* The license does not impose restrictions on the use of the software.
* 3D Slicer is NOT FDA approved. It is the users responsibility to ensure compliance with applicable rules and regulations.
* For details, please see the full [http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl license].

Special:Badtitle/NS100:UserOrientation

2008-11-08T19:15:56Z

Melonakos:

__NOTOC__
=Slicer User Orientation=

Slicer is an open-source software application for computer scientists and clinical researchers.

The platform provides functionality for segmentation, registration and three-dimensional visualization of multi-modal image data, as well as advanced image analysis algorithms for diffusion tensor imaging, functional magnetic resonance imaging and image-guided therapy. Standard image file formats are supported, and the application integrates interface capabilities to biomedical research software and image informatics frameworks.

Slicer is available for Linux, Mac, and Windows.

[[Image:Tharin_Neurosurgery.jpg|thumb|right|250 px|A coronal brain slice with super-imposed diffusion tensor tractography to show alteration in the arrangement of the tracts around a tumor. See [http://slicer.org/pages/Special:PubDB_View?dspaceid=327 Tharin et al Neurosurgery 2007] for more info.]]

== Get Slicer ==
*Slicer is free open source software and is distributed under a BSD license. Please fill out our license form, if you use Slicer [http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl Slicer license form].
*Compiled binaries are accessible through the [[Projects/slicerWeb:Downloads| Slicer Downloads]] page.

== Training and Documentation ==
The [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training Slicer 3 Training page] provides a series of courses for learning how to use Slicer 3. The portfolio contains self-guided presentation and sample data sets

Reference manual style [http://www.slicer.org/slicerWiki/index.php/Documentation documentation] for Slicer 3 can be found on the Slicer Wiki.

== Support ==
Feature requests and bug reports can be posted on the [http://www.na-mic.org/Bug/main_page.php Slicer bug tracker] page.

Please contact the [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Slicer Users mailing list] for questions related to the software, archives of slicer-users and subscription management tools.

Special:Badtitle/NS100:OldDownloads

2008-11-08T19:10:38Z

Melonakos:

__NOTOC__

This is the download page for compiled versions of the 3D Slicer software.

= License Agreement =

Please fill out the '''[http://www.slicer.org/cgi-bin/License/SlicerLicenseForm.pl Slicer License Form]''' before downloading any binary releases of Slicer.

= Downloads =
{| border="00" cellpadding="5" cellspacing="0"
|-
| rowspan="2"|
'''Hardware/OS requirement''': Either Windows XP or more recent, Linux (x86 or x86_64), Mac OS X (ppc or Intel), min 2 GB of RAM and a dedicated graphic accelerator with at least 128 MB of on-board graphic memory. Shared memory graphics will result in slow render speeds.

== Recommended Stable Slicer Releases ==
*'''[http://www.slicer.org/DownloadSlicer.php/Release Stable releases]''': Pre-compiled stable Slicer Releases for Linux, Windows, Mac and Solaris (this is where you find '''Slicer 3.2''' pre-compiled versions for supported platforms).

== Bleeding Edge Slicer Releases ==
*''[http://www.slicer.org/DownloadSlicer.php/Snapshots Snapshots]'': Custom built Slicer binaries, in various states of completion
*''[http://www.slicer.org/DownloadSlicer.php/Nightly Nightly]'': This page contains a week's worth of nightly builds

| style="background: #dddddd" colspan="2" align="center"| Slicer Download Statistics 
([http://wiki.slicer.org/slicerWiki/index.php?title=Projects/slicerWeb:Downloads#Download_Statistics live version at the bottom of this page])
|-
| style="background: #ebeced"|[[Image:SlicerDownloadsSeptember2008.png|center|300px]]
|}
 

=Resources=
*'''[http://www.na-mic.org/Bug/login_page.php Mantis Tracker]''': Report bugs and make feature requests here.
*'''[http://public.kitware.com/dashboard.php?name=slicer3 Slicer Dashboard]''': Information about the nightly builds.
*'''[[Projects/slicerWeb:SourceCode|Source Code]]''': This page points to the source code repositories.
*'''[[Mailinglist| Slicer mailing lists]]''': This page contains points to the Slicer user and developers mailing lists.
*'''X11 for Mac''': On Mac OS X you need X11 installed. We had good experience with [http://xquartz.macosforge.org/trac/wiki xquartz].
== Training ==
Training materials on how to use 3D Slicer.
*[http://wiki.na-mic.org/Wiki/index.php/Slicer3.2:Training '''Slicer 3''']
*[http://wiki.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101 '''Slicer 2''']
==Download Statistics==
* See [http://slicer.org/pages/Special:Download_Stats '''here'''] for 3D Slicer download statistics.

FAQ

2008-11-08T19:07:07Z

Melonakos:

= Frequently Asked Questions =

== How can I download Slicer? ==
Slicer3 is available for download by visiting the following link: [http://www.slicer.org/pages/Downloads Click Here]

Once you visit the link, select the "Stable Release" -> Your Operating System -> The Slicer3 file with the most recent date.

== What if I have problems with Slicer installation? ==
You can report problems and get help by joining and emailing the Slicer mailing list: [http://www.slicer.org/pages/Mailinglist Click Here]

== Where can I find Slicer tutorials? ==
Slicer3 tutorials are available by visiting the following link: [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training Click Here]

FAQ

2008-11-08T18:59:47Z

Melonakos:

= Frequently Asked Questions =

== How can I download Slicer? ==
Slicer3 is available for download by visiting the following link: [http://www.slicer.org/pages/Downloads Click Here]

Once you visit the link, select the "Stable Release" -> Your Operating System -> The Slicer3 file with the most recent date.

== What if I have problems with Slicer installation? ==
You can report problems and get help by joining and emailing the Slicer mailing list: [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Click Here]

== Where can I find Slicer tutorials? ==
Slicer3 tutorials are available by visiting the following link: [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training Click Here]

FAQ

2008-11-08T18:17:31Z

Melonakos: New page: = Frequently Asked Questions = == How can I download Slicer? == Slicer3 is available for download by visiting the following link: [http://www.slicer.org/pages/Downloads Click Here]

= Frequently Asked Questions =

== How can I download Slicer? ==
Slicer3 is available for download by visiting the following link: [http://www.slicer.org/pages/Downloads Click Here]