https://www.slicer.org/w/api.php?action=feedcontributions&feedformat=atom&user=Luciemac
Slicer Wiki - User contributions [en]
2026-04-13T17:59:58Z
User contributions
MediaWiki 1.33.0
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/Q3DC&diff=41962
Documentation/Nightly/Extensions/Q3DC
2015-07-03T00:23:23Z
<p>Luciemac: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'</p>
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<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
Extension: [[Documentation/{{documentation/version}}/Extensions/Q3DC|Q3DC]]<br><br />
Acknowledgments:<br />
This work was supported by the National Institues of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450<br><br />
Author: Lucie Macron (University of Michigan)<br><br />
Contributor1: Francois Budin (UNC)<br><br />
Contributor2: Beatriz Paniagua (UNC)<br><br />
Contributor3: Lucia Cevidanes (University of Michigan)<br><br />
Contact: Lucie Macron, <email>lucie.macron@gmail.com</email><br><br />
License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<gallery><br />
Image:UofM-logo.png|University of Michigan<br />
Image:Logo-namic.jpg|NAMIC<br />
Image:UNC-logo.png|UNC<br />
</gallery><br />
<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
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{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
<br />
This extension contains one module of the same name. Using placed fiducials, it allows users to compute 2D angles: Yaw, Pitch and Roll; and decompose the 3D distance into the three different components: R-L , A-P and S-I. <br />
It is possible to compute the middle point between two fiducials and export the values. <br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
{|<br />
|[[Image:Q3DC_Interface.png|thumb|300px|Interface of Q3DC]]<br />
|}<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
The source code is available on [https://github.com/DCBIA-OrthoLab/Q3DCExtension github]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
[[Category:Documentation/{{documentation/version}}/Modules/ShapeAnalysis]]<br />
<!-- ---------------------------- --></div>
Luciemac
https://www.slicer.org/w/index.php?title=File:Q3DC_Interface.png&diff=41961
File:Q3DC Interface.png
2015-07-03T00:22:47Z
<p>Luciemac: </p>
<hr />
<div></div>
Luciemac
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions&diff=41960
Documentation/Nightly/Extensions
2015-07-03T00:08:22Z
<p>Luciemac: /* Cat 2 */</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<noinclude><br />
__TOC__<br />
</noinclude>= Extensions by Category =<br />
<br />
==Cat 1==<br />
<br />
==Cat 2==<br />
*[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )<br />
* [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )<br />
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br />
* [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)<br />
* [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)<br />
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br />
* [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Kevin Wang, Adam Rankin, Greg Sharp, Andras Lasso, Steve Pieper)<br />
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br />
** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]<br />
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br />
<!-- ** [[Documentation/{{documentation/version}}/Modules/DicomSroImport|DICOM-SRO import]] --><br />
<!-- ** [[Documentation/{{documentation/version}}/Modules/DicomSroExport|DICOM-SRO export]] --><br />
** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br />
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br />
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br />
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br />
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br />
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br />
** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)<br />
** [[Documentation/{{documentation/version}}/Extensions/PathRecorder|Path Recorder]] (Alireza Mehrtash)<br />
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)<br />
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br />
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTI-Reg|DTI-Reg]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/MeshToLabelMap|MeshToLabelMap]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br />
* [[Documentation/{{documentation/version}}/Extensions/IntensitySegmenter|IntensitySegmenter]] (Francois Budin, Pengdong Xiao, Beatriz Paniagua)<br />
* [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)<br />
* [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)<br />
* [[Documentation/{{documentation/version}}/Extensions/SpharmPdm|SPHARM-PDM]] (Beatriz Paniagua, Francois Budin, Martin Styner)<br />
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br />
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br />
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br />
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br />
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br />
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br />
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br />
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br />
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br />
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br />
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/VolumeClip|VolumeClip]] (Andras Lasso, Matt Lougheed)<br />
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)<br />
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)<br />
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Luis G. Torres and Andinet Enquobahrie)<br />
* [[Documentation/{{documentation/version}}/Extensions/AutoPortPlacement|Auto Port Placement]] (Luis G. Torres, Andinet Enquobahrie)<br />
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)<br />
* [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)<br />
* [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)<br />
** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]<br />
** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]<br />
** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]<br />
* [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)<br />
* [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)<br />
* [[Documentation/{{documentation/version}}/Extensions/Sequences|Sequences]] - formerly Multidimensional data (Andras Lasso, Matthew Holden, Kevin Wang)<br />
* [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)<br />
* [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)<br />
* [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)<br />
* [[Documentation/{{documentation/version}}/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Atsushi Yamada, Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)<br />
* [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)<br />
** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]<br />
** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]<br />
* [[Documentation/{{documentation/version}}/Extensions/CurveMaker|CurveMaker]] (Junichi Tokuda)<br />
* [[Documentation/{{documentation/version}}/Extensions/CBC_3D_I2MConversion | CBC 3D I2MConversion]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov and Nikos Chrisochoides)<br />
** [[Documentation/{{documentation/version}}/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]<br />
** [[Documentation/{{documentation/version}}/Modules/MeshCompression|Mesh Compression]]<br />
* [[Documentation/{{documentation/version}}/Extensions/PBNRR|Physics-Based Non-Rigid Registration (PBNRR)]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz and Nikos Chrisochoides)<br />
* [[Documentation/{{documentation/version}}/Extensions/ResectionPlanner|ResectionVolume]] (Matt Lougheed)<br />
* [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM]] (Andrey Fedorov, Ethan Ulrich)<br />
* [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PETTumorSegmentation]] (Christian Bauer)<br />
* [[Documentation/{{documentation/version}}/Extensions/PET-IndiC|PET-IndiC]] (Ethan Ulrich)<br />
* [[Documentation/{{documentation/version}}/Extensions/CornerAnnotation|CornerAnnotation]] (Atsushi Yamada)<br />
* [[Documentation/{{documentation/version}}/Extensions/Wasp|Watershed Annotation and Segmentation Plugin.]] (Thomas Lawson)<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerPetSpectAnalysis|SlicerPetSpectAnalysis]] (Martín Bertran,Natalia Martínez, Guillermo Carbajal, Álvaro Gómez)<br />
** [[Documentation/{{documentation/version}}/Modules/dPetBrainQuantification|dPetBrainQuantification]]<br />
* [[Documentation/{{documentation/version}}/Extensions/IGTWizard|IGTWizard]] (Junichi Tokuda and Atsushi Yamada)<br />
* [[Documentation/{{documentation/version}}/Extensions/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Modules/T1_Mapping|T1_Mapping]] (Xiao Da, Artem Mamonov, Jayashree Kalpathy-Cramer and Andriy Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/PickAndPaint|PickAndPaint]] (Lucie Macron)<br />
* [[Documentation/{{documentation/version}}/Extensions/EasyClip|EasyClip]] (Julia Lopinto)<br />
* [[Documentation/{{documentation/version}}/Extensions/MeshStatistics|MeshStatistics]] (Lucie Macron)<br />
* [[Documentation/{{documentation/version}}/Extensions/AnglePlanes|AnglePlanes]] (Julia Lopinto)<br />
* [[Documentation/{{documentation/version}}/Extensions/Q3DC|Q3DC]] (Lucie Macron)<br />
<br />
==Cat 3==<br />
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)<br />
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)<br />
* [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)<br />
<noinclude><br />
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br />
</noinclude></div>
Luciemac
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/MeshStatistics&diff=41934
Documentation/Nightly/Extensions/MeshStatistics
2015-06-29T21:14:51Z
<p>Luciemac: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
Extension: [[Documentation/{{documentation/version}}/Extensions/MeshStatistics|MeshStatistics]]<br><br />
Acknowledgments:<br />
This work was supported by the National Institues of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450<br><br />
Author: Lucie Macron (University of Michigan)<br><br />
Contributor1: Francois Budin (UNC)<br><br />
Contributor2: Beatriz Paniagua (UNC)<br><br />
Contributor3: Lucia Cevidanes (University of Michigan)<br><br />
Contact: Lucie Macron, <email>lucie.macron@gmail.com</email><br><br />
License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<gallery><br />
Image:UofM-logo.png|University of Michigan<br />
Image:Logo-namic.jpg|NAMIC<br />
Image:UNC-logo.png|UNC<br />
</gallery><br />
<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
<br />
This extension contains one module of the same name. It allows user to compute different descriptive statistics on specific predefined regions or the entire model. <br />
MeshStatistics only works on a model that contains stored surface distances computed with the ModelToModelDistance module (computes a point by point distance between two models loaded in Slicer http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ModelToModelDistance)<br />
<br />
Statistics computed are:<br />
*Minimum and maximum values<br />
*Average<br />
*Standard deviation<br />
*Percentile (5th, 15th, 25th, 50th, 75th, 85th, 95th)<br />
<br />
Statistics are displayed on a table and it is possible to export all those values as csv files. <br />
It’s possible to compute statistics on several models at the same time as long as regions on which users want compute statistics are the same on each of them.<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
{|<br />
|[[Image:MeshStatistics_Interface.png|thumb|300px|Interface of Mesh Statistics]]<br />
|}<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
The source code is available on [https://github.com/DCBIA-OrthoLab/MeshStatisticsExtension github]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
[[Category:Documentation/{{documentation/version}}/Modules/ShapeAnalysis]]<br />
<!-- ---------------------------- --></div>
Luciemac
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions&diff=41933
Documentation/Nightly/Extensions
2015-06-29T21:14:08Z
<p>Luciemac: /* Cat 2 */</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<noinclude><br />
__TOC__<br />
</noinclude>= Extensions by Category =<br />
<br />
==Cat 1==<br />
<br />
==Cat 2==<br />
*[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )<br />
* [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )<br />
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br />
* [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)<br />
* [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)<br />
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br />
* [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Kevin Wang, Adam Rankin, Greg Sharp, Andras Lasso, Steve Pieper)<br />
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br />
** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]<br />
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br />
<!-- ** [[Documentation/{{documentation/version}}/Modules/DicomSroImport|DICOM-SRO import]] --><br />
<!-- ** [[Documentation/{{documentation/version}}/Modules/DicomSroExport|DICOM-SRO export]] --><br />
** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br />
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br />
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br />
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br />
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br />
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br />
** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)<br />
** [[Documentation/{{documentation/version}}/Extensions/PathRecorder|Path Recorder]] (Alireza Mehrtash)<br />
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)<br />
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br />
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTI-Reg|DTI-Reg]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/MeshToLabelMap|MeshToLabelMap]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br />
* [[Documentation/{{documentation/version}}/Extensions/IntensitySegmenter|IntensitySegmenter]] (Francois Budin, Pengdong Xiao, Beatriz Paniagua)<br />
* [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)<br />
* [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)<br />
* [[Documentation/{{documentation/version}}/Extensions/SpharmPdm|SPHARM-PDM]] (Beatriz Paniagua, Francois Budin, Martin Styner)<br />
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br />
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br />
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br />
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br />
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br />
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br />
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br />
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br />
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br />
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br />
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/VolumeClip|VolumeClip]] (Andras Lasso, Matt Lougheed)<br />
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)<br />
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)<br />
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Luis G. Torres and Andinet Enquobahrie)<br />
* [[Documentation/{{documentation/version}}/Extensions/AutoPortPlacement|Auto Port Placement]] (Luis G. Torres, Andinet Enquobahrie)<br />
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)<br />
* [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)<br />
* [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)<br />
** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]<br />
** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]<br />
** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]<br />
* [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)<br />
* [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)<br />
* [[Documentation/{{documentation/version}}/Extensions/Sequences|Sequences]] - formerly Multidimensional data (Andras Lasso, Matthew Holden, Kevin Wang)<br />
* [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)<br />
* [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)<br />
* [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)<br />
* [[Documentation/{{documentation/version}}/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Atsushi Yamada, Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)<br />
* [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)<br />
** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]<br />
** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]<br />
* [[Documentation/{{documentation/version}}/Extensions/CurveMaker|CurveMaker]] (Junichi Tokuda)<br />
* [[Documentation/{{documentation/version}}/Extensions/CBC_3D_I2MConversion | CBC 3D I2MConversion]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov and Nikos Chrisochoides)<br />
** [[Documentation/{{documentation/version}}/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]<br />
** [[Documentation/{{documentation/version}}/Modules/MeshCompression|Mesh Compression]]<br />
* [[Documentation/{{documentation/version}}/Extensions/PBNRR|Physics-Based Non-Rigid Registration (PBNRR)]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz and Nikos Chrisochoides)<br />
* [[Documentation/{{documentation/version}}/Extensions/ResectionPlanner|ResectionVolume]] (Matt Lougheed)<br />
* [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM]] (Andrey Fedorov, Ethan Ulrich)<br />
* [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PETTumorSegmentation]] (Christian Bauer)<br />
* [[Documentation/{{documentation/version}}/Extensions/PET-IndiC|PET-IndiC]] (Ethan Ulrich)<br />
* [[Documentation/{{documentation/version}}/Extensions/CornerAnnotation|CornerAnnotation]] (Atsushi Yamada)<br />
* [[Documentation/{{documentation/version}}/Extensions/Wasp|Watershed Annotation and Segmentation Plugin.]] (Thomas Lawson)<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerPetSpectAnalysis|SlicerPetSpectAnalysis]] (Martín Bertran,Natalia Martínez, Guillermo Carbajal, Álvaro Gómez)<br />
** [[Documentation/{{documentation/version}}/Modules/dPetBrainQuantification|dPetBrainQuantification]]<br />
* [[Documentation/{{documentation/version}}/Extensions/IGTWizard|IGTWizard]] (Junichi Tokuda and Atsushi Yamada)<br />
* [[Documentation/{{documentation/version}}/Extensions/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Modules/T1_Mapping|T1_Mapping]] (Xiao Da, Artem Mamonov, Jayashree Kalpathy-Cramer and Andriy Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/PickAndPaint|PickAndPaint]] (Lucie Macron)<br />
* [[Documentation/{{documentation/version}}/Extensions/EasyClip|EasyClip]] (Julia Lopinto)<br />
* [[Documentation/{{documentation/version}}/Extensions/MeshStatistics|MeshStatistics]] (Lucie Macron)<br />
<br />
==Cat 3==<br />
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)<br />
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)<br />
* [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)<br />
<noinclude><br />
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br />
</noinclude></div>
Luciemac
https://www.slicer.org/w/index.php?title=File:MeshStatistics_Interface.png&diff=41932
File:MeshStatistics Interface.png
2015-06-29T21:12:24Z
<p>Luciemac: </p>
<hr />
<div></div>
Luciemac
https://www.slicer.org/w/index.php?title=User:Luciemac&diff=41931
User:Luciemac
2015-06-29T20:04:08Z
<p>Luciemac: Blanked the page</p>
<hr />
<div></div>
Luciemac
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/PickAndPaint&diff=41849
Documentation/Nightly/Extensions/PickAndPaint
2015-06-19T21:29:20Z
<p>Luciemac: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
Extension: [[Documentation/{{documentation/version}}/Extensions/PickAndPaint|PickAndPaint]]<br><br />
Acknowledgments:<br />
This work was supported by the National Institues of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450<br><br />
Author: Lucie Macron (University of Michigan)<br><br />
Contributor 1: Francois Budin (UNC)<br><br />
Contributor 2: Beatriz Paniagua (UNC)<br><br />
Contributor 3: Lucia Cevidanes (University of Michigan)<br><br />
Contact: Lucie Macron, <email>lucie.macron@gmail.com</email><br><br />
License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<gallery><br />
Image:UofM-logo.png|University of Michigan<br />
Image:Logo-namic.jpg|NAMIC<br />
Image:UNC-logo.png|UNC<br />
</gallery><br />
<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
<br />
This extension contains one module of the same name. It allows user to define different regions of interest (ROIs) by positioning a landmark on the 3D model (VTK file) and defining a radius for the region (the radius is defined in term of neighbors and not in millimeter, so far) <br />
The landmark is sticked to the mesh and positioned to the closest vertex of the mesh. Tracking of the landmark on the surface is available too.<br />
ROIs are saved in the model as a point data array under the name: modelName_ROI_IdOfTheROI. It is possible to propagate ROIs over different models.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
{|<br />
|[[Image:Pick'NPaint_Interface.png|thumb|300px|Interface of Pick'N Paint]]<br />
|}<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
The source code is available on [https://github.com/DCBIA-OrthoLab/PickAndPaintExtension github]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
[[Category:Documentation/{{documentation/version}}/Modules/ShapeAnalysis]]<br />
<!-- ---------------------------- --></div>
Luciemac
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/PickAndPaint&diff=41848
Documentation/Nightly/Extensions/PickAndPaint
2015-06-19T21:28:58Z
<p>Luciemac: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
Extension: [[Documentation/{{documentation/version}}/Extensions/PickAndPaint|PickAndPaint]]<br><br />
Acknowledgments:<br />
This work was supported by the National Institues of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450<br><br />
Author: Lucie Macron (University of Michigan)<br><br />
Contributor1: Francois Budin (UNC)<br><br />
Contributor2: Beatriz Paniagua (UNC)<br><br />
Contributor3: Lucia Cevidanes (University of Michigan)<br><br />
Contact: Lucie Macron, <email>lucie.macron@gmail.com</email><br><br />
License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<gallery><br />
Image:UofM-logo.png|University of Michigan<br />
Image:Logo-namic.jpg|NAMIC<br />
Image:UNC-logo.png|UNC<br />
</gallery><br />
<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
<br />
This extension contains one module of the same name. It allows user to define different regions of interest (ROIs) by positioning a landmark on the 3D model (VTK file) and defining a radius for the region (the radius is defined in term of neighbors and not in millimeter, so far) <br />
The landmark is sticked to the mesh and positioned to the closest vertex of the mesh. Tracking of the landmark on the surface is available too.<br />
ROIs are saved in the model as a point data array under the name: modelName_ROI_IdOfTheROI. It is possible to propagate ROIs over different models.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
{|<br />
|[[Image:Pick'NPaint_Interface.png|thumb|300px|Interface of Pick'N Paint]]<br />
|}<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
The source code is available on [https://github.com/DCBIA-OrthoLab/PickAndPaintExtension github]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
[[Category:Documentation/{{documentation/version}}/Modules/ShapeAnalysis]]<br />
<!-- ---------------------------- --></div>
Luciemac
https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions&diff=41847
Documentation/Nightly/Extensions
2015-06-19T21:28:38Z
<p>Luciemac: /* Cat 2 */</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<noinclude><br />
__TOC__<br />
</noinclude>= Extensions by Category =<br />
<br />
==Cat 1==<br />
<br />
==Cat 2==<br />
*[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )<br />
* [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )<br />
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br />
* [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)<br />
* [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)<br />
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br />
* [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Kevin Wang, Adam Rankin, Greg Sharp, Andras Lasso, Steve Pieper)<br />
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br />
** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]<br />
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br />
<!-- ** [[Documentation/{{documentation/version}}/Modules/DicomSroImport|DICOM-SRO import]] --><br />
<!-- ** [[Documentation/{{documentation/version}}/Modules/DicomSroExport|DICOM-SRO export]] --><br />
** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br />
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br />
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br />
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br />
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br />
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br />
** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)<br />
** [[Documentation/{{documentation/version}}/Extensions/PathRecorder|Path Recorder]] (Alireza Mehrtash)<br />
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)<br />
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br />
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTI-Reg|DTI-Reg]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/MeshToLabelMap|MeshToLabelMap]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br />
* [[Documentation/{{documentation/version}}/Extensions/IntensitySegmenter|IntensitySegmenter]] (Francois Budin, Pengdong Xiao, Beatriz Paniagua)<br />
* [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)<br />
* [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)<br />
* [[Documentation/{{documentation/version}}/Extensions/SpharmPdm|SPHARM-PDM]] (Beatriz Paniagua, Francois Budin, Martin Styner)<br />
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br />
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br />
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br />
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br />
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br />
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br />
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br />
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br />
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br />
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br />
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/VolumeClip|VolumeClip]] (Andras Lasso, Matt Lougheed)<br />
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)<br />
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)<br />
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Luis G. Torres and Andinet Enquobahrie)<br />
* [[Documentation/{{documentation/version}}/Extensions/AutoPortPlacement|Auto Port Placement]] (Luis G. Torres, Andinet Enquobahrie)<br />
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)<br />
* [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)<br />
* [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)<br />
** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]<br />
** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]<br />
** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]<br />
* [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)<br />
* [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)<br />
* [[Documentation/{{documentation/version}}/Extensions/Sequences|Sequences]] - formerly Multidimensional data (Andras Lasso, Matthew Holden, Kevin Wang)<br />
* [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)<br />
* [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)<br />
* [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)<br />
* [[Documentation/{{documentation/version}}/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Atsushi Yamada, Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)<br />
* [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)<br />
** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]<br />
** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]<br />
* [[Documentation/{{documentation/version}}/Extensions/CurveMaker|CurveMaker]] (Junichi Tokuda)<br />
* [[Documentation/{{documentation/version}}/Extensions/CBC_3D_I2MConversion | CBC 3D I2MConversion]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov and Nikos Chrisochoides)<br />
** [[Documentation/{{documentation/version}}/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]<br />
** [[Documentation/{{documentation/version}}/Modules/MeshCompression|Mesh Compression]]<br />
* [[Documentation/{{documentation/version}}/Extensions/PBNRR|Physics-Based Non-Rigid Registration (PBNRR)]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz and Nikos Chrisochoides)<br />
* [[Documentation/{{documentation/version}}/Extensions/ResectionPlanner|ResectionVolume]] (Matt Lougheed)<br />
* [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM]] (Andrey Fedorov, Ethan Ulrich)<br />
* [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PETTumorSegmentation]] (Christian Bauer)<br />
* [[Documentation/{{documentation/version}}/Extensions/PET-IndiC|PET-IndiC]] (Ethan Ulrich)<br />
* [[Documentation/{{documentation/version}}/Extensions/CornerAnnotation|CornerAnnotation]] (Atsushi Yamada)<br />
* [[Documentation/{{documentation/version}}/Extensions/Wasp|Watershed Annotation and Segmentation Plugin.]] (Thomas Lawson)<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerPetSpectAnalysis|SlicerPetSpectAnalysis]] (Martín Bertran,Natalia Martínez, Guillermo Carbajal, Álvaro Gómez)<br />
** [[Documentation/{{documentation/version}}/Modules/dPetBrainQuantification|dPetBrainQuantification]]<br />
* [[Documentation/{{documentation/version}}/Extensions/IGTWizard|IGTWizard]] (Junichi Tokuda and Atsushi Yamada)<br />
* [[Documentation/{{documentation/version}}/Extensions/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Modules/T1_Mapping|T1_Mapping]] (Xiao Da, Artem Mamonov, Jayashree Kalpathy-Cramer and Andriy Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/PickAndPaint|PickAndPaint]] (Lucie Macron)<br />
<br />
==Cat 3==<br />
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)<br />
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)<br />
* [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)<br />
<noinclude><br />
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br />
</noinclude></div>
Luciemac
https://www.slicer.org/w/index.php?title=Documentation//Extensions/PickAndPaint&diff=41846
Documentation//Extensions/PickAndPaint
2015-06-19T21:22:53Z
<p>Luciemac: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
Extension: [[Documentation/{{documentation/version}}/Extensions/PickAndPaint|PickAndPaint]]<br><br />
Acknowledgments:<br />
This work was supported by the National Institues of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450<br><br />
Author: Lucie Macron (University of Michigan)<br><br />
Contributor1: Francois Budin (UNC)<br><br />
Contributor2: Beatriz Paniagua (UNC)<br><br />
Contributor3: Lucia Cevidanes (University of Michigan)<br><br />
Contact: Lucie Macron, <email>lucie.macron@gmail.com</email><br><br />
License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<gallery><br />
Image:UofM-logo.png|University of Michigan<br />
Image:Logo-namic.jpg|NAMIC<br />
Image:UNC-logo.png|UNC<br />
</gallery><br />
<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
<br />
This extension contains one module of the same name. It allows user to define different regions of interest (ROIs) by positioning a landmark on the 3D model (VTK file) and defining a radius for the region (the radius is defined in term of neighbors and not in millimeter, so far) <br />
The landmark is sticked to the mesh and positioned to the closest vertex of the mesh. Tracking of the landmark on the surface is available too.<br />
ROIs are saved in the model as a point data array under the name: modelName_ROI_IdOfTheROI. It is possible to propagate ROIs over different models.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
{|<br />
|[[Image:Pick'NPaint_Interface.png|thumb|300px|Interface of Pick'N Paint]]<br />
|}<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
The source code is available on [https://github.com/DCBIA-OrthoLab/PickAndPaintExtension github]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
[[Category:Documentation/{{documentation/version}}/Modules/ShapeAnalysis]]<br />
<!-- ---------------------------- --></div>
Luciemac
https://www.slicer.org/w/index.php?title=User:Luciemac&diff=41845
User:Luciemac
2015-06-19T21:21:38Z
<p>Luciemac: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
Extension: [[Documentation/{{documentation/version}}/Extensions/PickAndPaint|PickAndPaint]]<br><br />
Acknowledgments:<br />
This work was supported by the National Institues of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450<br><br />
Author: Lucie Macron (University of Michigan)<br><br />
Contributor1: Francois Budin (UNC)<br><br />
Contributor2: Beatriz Paniagua (UNC)<br><br />
Contributor3: Lucia Cevidanes (University of Michigan)<br><br />
Contact: Lucie Macron, <email>lucie.macron@gmail.com</email><br><br />
License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<gallery><br />
Image:UofM-logo.png|University of Michigan<br />
Image:Logo-namic.jpg|NAMIC<br />
Image:UNC-logo.png|UNC<br />
</gallery><br />
<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
<br />
This extension contains one module of the same name. It allows user to define different regions of interest (ROIs) by positioning a landmark on the 3D model (VTK file) and defining a radius for the region (the radius is defined in term of neighbors and not in millimeter, so far) <br />
The landmark is sticked to the mesh and positioned to the closest vertex of the mesh. Tracking of the landmark on the surface is available too.<br />
ROIs are saved in the model as a point data array under the name: modelName_ROI_IdOfTheROI. It is possible to propagate ROIs over different models.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
{|<br />
|[[Image:Pick'NPaint_Interface.png|thumb|300px|Interface of Pick'N Paint]]<br />
|}<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
The source code is available on [https://github.com/DCBIA-OrthoLab/PickAndPaintExtension github]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
[[Category:Documentation/{{documentation/version}}/Modules/ShapeAnalysis]]<br />
<!-- ---------------------------- --></div>
Luciemac
https://www.slicer.org/w/index.php?title=User:Luciemac&diff=41844
User:Luciemac
2015-06-19T20:55:56Z
<p>Luciemac: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
Extension: [[Documentation/{{documentation/version}}/Extensions/Pick'N Paint|Pick'N Paint]]<br><br />
Acknowledgments:<br />
This work was supported by the National Institues of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450<br><br />
Author: Lucie Macron (University of Michigan)<br><br />
Contributor1: Francois Budin (UNC)<br><br />
Contributor2: Beatriz Paniagua (UNC)<br><br />
Contributor3: Lucia Cevidanes (University of Michigan)<br><br />
Contact: Lucie Macron, <email>lucie.macron@gmail.com</email><br><br />
License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<gallery><br />
Image:UofM-logo.png|University of Michigan<br />
Image:Logo-namic.jpg|NAMIC<br />
Image:UNC-logo.png|UNC<br />
</gallery><br />
<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
<br />
This extension contains one module of the same name. It allows user to define different regions of interest (ROIs) by positioning a landmark on the 3D model (VTK file) and defining a radius for the region (the radius is defined in term of neighbors and not in millimeter, so far) <br />
The landmark is sticked to the mesh and positioned to the closest vertex of the mesh. Tracking of the landmark on the surface is available too.<br />
ROIs are saved in the model as a point data array under the name: modelName_ROI_IdOfTheROI. It is possible to propagate ROIs over different models.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
{|<br />
|[[Image:Pick'NPaint_Interface.png|thumb|300px|Interface of Pick'N Paint]]<br />
|}<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
The source code is available on [https://github.com/DCBIA-OrthoLab/PickAndPaintExtension github]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
[[Category:Documentation/{{documentation/version}}/Modules/ShapeAnalysis]]<br />
<!-- ---------------------------- --></div>
Luciemac
https://www.slicer.org/w/index.php?title=File:Pick%27NPaint_Interface.png&diff=41843
File:Pick'NPaint Interface.png
2015-06-19T18:49:18Z
<p>Luciemac: </p>
<hr />
<div></div>
Luciemac