https://www.slicer.org/w/api.php?action=feedcontributions&feedformat=atom&user=Julia+Lopinto Slicer Wiki - User contributions [en] 2026-05-14T00:56:58Z User contributions MediaWiki 1.33.0 https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/AnglePlanes&diff=41959 Documentation/Nightly/Extensions/AnglePlanes 2015-07-02T21:46:15Z <p>Julia Lopinto: Created page with '&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt; &lt;!-- ---------------------------- --&gt; {{documentation/{{documentation/version}}/module-header}} &lt;!-- ----------------------…'</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> Extension: [[Documentation/{{documentation/version}}/Extensions/AnglePlanes|AnglePlanes]]&lt;br&gt;<br /> Acknowledgments:<br /> This work was supported by the National Institues of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450&lt;br&gt;<br /> Author: Julia Lopinto, University of Michigan&lt;br&gt;<br /> Contributors: &lt;br&gt;<br /> - Francois Budin (NIRAL, University of North Carolina), &lt;br&gt;<br /> - Beatriz Paniagua (NIRAL, University Of North Carolina), &lt;br&gt;<br /> - Lucia Cevidanes (University of Michigan - School of Dentistry)&lt;br&gt;<br /> Contact: Julia Lopinto, &lt;email&gt;lopinto.julia@gmail.com&lt;/email&gt;&lt;br&gt;<br /> License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br /> &lt;gallery&gt;<br /> Image:UofM-logo.png|University of Michigan<br /> Image:UNC-logo.png|UNC<br /> Image:Logo-namic.jpg‎|NAMIC<br /> &lt;/gallery&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> <br /> This Module is used to calculate the angle between two planes by using the normals. The user gets the choice to use two planes which are already implemented on Slicer or they can define a plane by using landmarks (at least 3 landmarks). Plane can also be saved to be reused for other models.<br /> <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Tutorials}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> <br /> {|<br /> |[[Image:AnglePlanes_Logo.png‎|thumb|340px|Logo for AnglePlanes]]<br /> |[[Image:Interface_AnglePlanes.png|thumb|240px|Interface of AnglePlanes]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Julia Lopinto https://www.slicer.org/w/index.php?title=File:AnglePlanes_Logo.png&diff=41958 File:AnglePlanes Logo.png 2015-07-02T21:45:50Z <p>Julia Lopinto: </p> <hr /> <div></div> Julia Lopinto https://www.slicer.org/w/index.php?title=File:Interface_AnglePlanes.png&diff=41956 File:Interface AnglePlanes.png 2015-07-02T21:20:18Z <p>Julia Lopinto: </p> <hr /> <div></div> Julia Lopinto https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions&diff=41955 Documentation/Nightly/Extensions 2015-07-02T21:16:17Z <p>Julia Lopinto: /* Cat 2 */</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;noinclude&gt;<br /> __TOC__<br /> &lt;/noinclude&gt;= Extensions by Category =<br /> <br /> ==Cat 1==<br /> <br /> ==Cat 2==<br /> *[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )<br /> * [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )<br /> * [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br /> * [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)<br /> * [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)<br /> * [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br /> * [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Kevin Wang, Adam Rankin, Greg Sharp, Andras Lasso, Steve Pieper)<br /> ** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br /> &lt;!-- ** [[Documentation/{{documentation/version}}/Modules/DicomSroImport|DICOM-SRO import]] --&gt;<br /> &lt;!-- ** [[Documentation/{{documentation/version}}/Modules/DicomSroExport|DICOM-SRO export]] --&gt;<br /> ** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br /> ** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br /> ** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br /> ** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br /> ** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br /> ** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br /> ** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)<br /> ** [[Documentation/{{documentation/version}}/Extensions/PathRecorder|Path Recorder]] (Alireza Mehrtash)<br /> * [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)<br /> * [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br /> * [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTI-Reg|DTI-Reg]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/MeshToLabelMap|MeshToLabelMap]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br /> * [[Documentation/{{documentation/version}}/Extensions/IntensitySegmenter|IntensitySegmenter]] (Francois Budin, Pengdong Xiao, Beatriz Paniagua)<br /> * [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)<br /> * [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)<br /> * [[Documentation/{{documentation/version}}/Extensions/SpharmPdm|SPHARM-PDM]] (Beatriz Paniagua, Francois Budin, Martin Styner)<br /> * [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br /> * [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br /> * [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br /> * [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br /> * [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br /> ** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br /> * [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br /> * [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br /> * [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br /> * [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br /> * [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br /> * [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)<br /> * [[Documentation/{{documentation/version}}/Extensions/VolumeClip|VolumeClip]] (Andras Lasso, Matt Lougheed)<br /> * [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)<br /> * [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)<br /> **[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)<br /> * [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Luis G. Torres and Andinet Enquobahrie)<br /> * [[Documentation/{{documentation/version}}/Extensions/AutoPortPlacement|Auto Port Placement]] (Luis G. Torres, Andinet Enquobahrie)<br /> * [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)<br /> * [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)<br /> * [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)<br /> * [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)<br /> ** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]<br /> ** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]<br /> ** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]<br /> * [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)<br /> * [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)<br /> * [[Documentation/{{documentation/version}}/Extensions/Sequences|Sequences]] - formerly Multidimensional data (Andras Lasso, Matthew Holden, Kevin Wang)<br /> * [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)<br /> * [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)<br /> * [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)<br /> * [[Documentation/{{documentation/version}}/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Atsushi Yamada, Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)<br /> * [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)<br /> ** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]<br /> ** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]<br /> * [[Documentation/{{documentation/version}}/Extensions/CurveMaker|CurveMaker]] (Junichi Tokuda)<br /> * [[Documentation/{{documentation/version}}/Extensions/CBC_3D_I2MConversion | CBC 3D I2MConversion]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov and Nikos Chrisochoides)<br /> ** [[Documentation/{{documentation/version}}/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]<br /> ** [[Documentation/{{documentation/version}}/Modules/MeshCompression|Mesh Compression]]<br /> * [[Documentation/{{documentation/version}}/Extensions/PBNRR|Physics-Based Non-Rigid Registration (PBNRR)]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz and Nikos Chrisochoides)<br /> * [[Documentation/{{documentation/version}}/Extensions/ResectionPlanner|ResectionVolume]] (Matt Lougheed)<br /> * [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM]] (Andrey Fedorov, Ethan Ulrich)<br /> * [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PETTumorSegmentation]] (Christian Bauer)<br /> * [[Documentation/{{documentation/version}}/Extensions/PET-IndiC|PET-IndiC]] (Ethan Ulrich)<br /> * [[Documentation/{{documentation/version}}/Extensions/CornerAnnotation|CornerAnnotation]] (Atsushi Yamada)<br /> * [[Documentation/{{documentation/version}}/Extensions/Wasp|Watershed Annotation and Segmentation Plugin.]] (Thomas Lawson)<br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerPetSpectAnalysis|SlicerPetSpectAnalysis]] (Martín Bertran,Natalia Martínez, Guillermo Carbajal, Álvaro Gómez)<br /> ** [[Documentation/{{documentation/version}}/Modules/dPetBrainQuantification|dPetBrainQuantification]]<br /> * [[Documentation/{{documentation/version}}/Extensions/IGTWizard|IGTWizard]] (Junichi Tokuda and Atsushi Yamada)<br /> * [[Documentation/{{documentation/version}}/Extensions/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Modules/T1_Mapping|T1_Mapping]] (Xiao Da, Artem Mamonov, Jayashree Kalpathy-Cramer and Andriy Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/PickAndPaint|PickAndPaint]] (Lucie Macron)<br /> * [[Documentation/{{documentation/version}}/Extensions/EasyClip|EasyClip]] (Julia Lopinto)<br /> * [[Documentation/{{documentation/version}}/Extensions/MeshStatistics|MeshStatistics]] (Lucie Macron)<br /> * [[Documentation/{{documentation/version}}/Extensions/AnglePlanes|AnglePlanes]] (Julia Lopinto)<br /> <br /> ==Cat 3==<br /> * [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation-&gt;TrainModel]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation-&gt;PredictLesions]] (Mark Scully)<br /> * [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)<br /> * [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)<br /> &lt;noinclude&gt;<br /> {{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br /> &lt;/noinclude&gt;</div> Julia Lopinto https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions&diff=41855 Documentation/Nightly/Extensions 2015-06-22T16:55:31Z <p>Julia Lopinto: /* Cat 2 */</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;noinclude&gt;<br /> __TOC__<br /> &lt;/noinclude&gt;= Extensions by Category =<br /> <br /> ==Cat 1==<br /> <br /> ==Cat 2==<br /> *[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )<br /> * [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )<br /> * [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br /> * [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)<br /> * [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)<br /> * [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br /> * [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br /> * [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Kevin Wang, Adam Rankin, Greg Sharp, Andras Lasso, Steve Pieper)<br /> ** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br /> ** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br /> ** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br /> &lt;!-- ** [[Documentation/{{documentation/version}}/Modules/DicomSroImport|DICOM-SRO import]] --&gt;<br /> &lt;!-- ** [[Documentation/{{documentation/version}}/Modules/DicomSroExport|DICOM-SRO export]] --&gt;<br /> ** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br /> *** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br /> ** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br /> ** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br /> ** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br /> ** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br /> ** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br /> ** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)<br /> ** [[Documentation/{{documentation/version}}/Extensions/PathRecorder|Path Recorder]] (Alireza Mehrtash)<br /> * [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)<br /> * [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br /> * [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTI-Reg|DTI-Reg]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/MeshToLabelMap|MeshToLabelMap]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br /> * [[Documentation/{{documentation/version}}/Extensions/IntensitySegmenter|IntensitySegmenter]] (Francois Budin, Pengdong Xiao, Beatriz Paniagua)<br /> * [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)<br /> * [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)<br /> * [[Documentation/{{documentation/version}}/Extensions/SpharmPdm|SPHARM-PDM]] (Beatriz Paniagua, Francois Budin, Martin Styner)<br /> * [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br /> * [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br /> * [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br /> * [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br /> * [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br /> ** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br /> * [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br /> * [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br /> * [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br /> * [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br /> * [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br /> * [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)<br /> * [[Documentation/{{documentation/version}}/Extensions/VolumeClip|VolumeClip]] (Andras Lasso, Matt Lougheed)<br /> * [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)<br /> * [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)<br /> **[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)<br /> * [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Luis G. Torres and Andinet Enquobahrie)<br /> * [[Documentation/{{documentation/version}}/Extensions/AutoPortPlacement|Auto Port Placement]] (Luis G. Torres, Andinet Enquobahrie)<br /> * [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)<br /> * [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)<br /> * [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)<br /> * [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)<br /> ** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]<br /> ** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]<br /> ** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]<br /> * [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)<br /> * [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)<br /> * [[Documentation/{{documentation/version}}/Extensions/Sequences|Sequences]] - formerly Multidimensional data (Andras Lasso, Matthew Holden, Kevin Wang)<br /> * [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)<br /> * [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)<br /> * [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)<br /> * [[Documentation/{{documentation/version}}/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Atsushi Yamada, Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)<br /> * [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)<br /> ** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]<br /> ** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]<br /> * [[Documentation/{{documentation/version}}/Extensions/CurveMaker|CurveMaker]] (Junichi Tokuda)<br /> * [[Documentation/{{documentation/version}}/Extensions/CBC_3D_I2MConversion | CBC 3D I2MConversion]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov and Nikos Chrisochoides)<br /> ** [[Documentation/{{documentation/version}}/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]<br /> ** [[Documentation/{{documentation/version}}/Modules/MeshCompression|Mesh Compression]]<br /> * [[Documentation/{{documentation/version}}/Extensions/PBNRR|Physics-Based Non-Rigid Registration (PBNRR)]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz and Nikos Chrisochoides)<br /> * [[Documentation/{{documentation/version}}/Extensions/ResectionPlanner|ResectionVolume]] (Matt Lougheed)<br /> * [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM]] (Andrey Fedorov, Ethan Ulrich)<br /> * [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PETTumorSegmentation]] (Christian Bauer)<br /> * [[Documentation/{{documentation/version}}/Extensions/PET-IndiC|PET-IndiC]] (Ethan Ulrich)<br /> * [[Documentation/{{documentation/version}}/Extensions/CornerAnnotation|CornerAnnotation]] (Atsushi Yamada)<br /> * [[Documentation/{{documentation/version}}/Extensions/Wasp|Watershed Annotation and Segmentation Plugin.]] (Thomas Lawson)<br /> * [[Documentation/{{documentation/version}}/Extensions/SlicerPetSpectAnalysis|SlicerPetSpectAnalysis]] (Martín Bertran,Natalia Martínez, Guillermo Carbajal, Álvaro Gómez)<br /> ** [[Documentation/{{documentation/version}}/Modules/dPetBrainQuantification|dPetBrainQuantification]]<br /> * [[Documentation/{{documentation/version}}/Extensions/IGTWizard|IGTWizard]] (Junichi Tokuda and Atsushi Yamada)<br /> * [[Documentation/{{documentation/version}}/Extensions/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] (Francois Budin)<br /> * [[Documentation/{{documentation/version}}/Modules/T1_Mapping|T1_Mapping]] (Xiao Da, Artem Mamonov, Jayashree Kalpathy-Cramer and Andriy Fedorov)<br /> * [[Documentation/{{documentation/version}}/Extensions/PickAndPaint|PickAndPaint]] (Lucie Macron)<br /> * [[Documentation/{{documentation/version}}/Extensions/EasyClip|EasyClip]] (Julia Lopinto)<br /> <br /> ==Cat 3==<br /> * [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation-&gt;TrainModel]] (Mark Scully)<br /> **[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation-&gt;PredictLesions]] (Mark Scully)<br /> * [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)<br /> * [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)<br /> &lt;noinclude&gt;<br /> {{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br /> &lt;/noinclude&gt;</div> Julia Lopinto https://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/EasyClip&diff=41854 Documentation/Nightly/Extensions/EasyClip 2015-06-22T16:54:47Z <p>Julia Lopinto: Created page with '&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt; &lt;!-- ---------------------------- --&gt; {{documentation/{{documentation/version}}/module-header}} &lt;!-- ----------------------…'</p> <hr /> <div>&lt;noinclude&gt;{{documentation/versioncheck}}&lt;/noinclude&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-header}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br /> Extension: [[Documentation/{{documentation/version}}/Extensions/EasyClip|EasyClip]]&lt;br&gt;<br /> Acknowledgments:<br /> This work was supported by the National Institues of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450&lt;br&gt;<br /> Author: Julia Lopinto, University of Michigan&lt;br&gt;<br /> Contributors: &lt;br&gt;<br /> - Francois Budin (NIRAL, University of North Carolina), &lt;br&gt;<br /> - Beatriz Paniagua (NIRAL, University Of North Carolina), &lt;br&gt;<br /> - Lucia Cevidanes (University of Michigan - School of Dentistry)&lt;br&gt;<br /> Contact: Julia Lopinto, &lt;email&gt;lopinto.julia@gmail.com&lt;/email&gt;&lt;br&gt;<br /> License: [http://www.apache.org/licenses/LICENSE-2.0.html Apache License, Version 2.0]<br /> &lt;gallery&gt;<br /> Image:UofM-logo.png|University of Michigan<br /> Image:UNC-logo.png|UNC<br /> Image:Logo-namic.jpg‎|NAMIC<br /> &lt;/gallery&gt;<br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Extension Description}}<br /> <br /> This Module is used to clip one or different 3D Models according to a predetermined plane. &lt;br&gt;<br /> Plane can be saved to be reused for other models. &lt;br&gt;<br /> After clipping, the models are closed and can be saved as new 3D Models.&lt;br&gt;<br /> <br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Tutorials}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Use Cases}}<br /> <br /> {|<br /> |[[Image:EasyClipLogo.png|thumb|340px|Logo for EasyClip]]<br /> |[[Image:EasyClipInterface.png|thumb|240px|Interface of EasyClip]]<br /> |[[Image:EasyClipPlanePosition.png|thumb|340px|EasyClip: Plane Position]]<br /> |}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Similar Extensions}}<br /> N/A<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-section|Information for Developers}}<br /> <br /> &lt;!-- ---------------------------- --&gt;<br /> {{documentation/{{documentation/version}}/extension-footer}}<br /> &lt;!-- ---------------------------- --&gt;</div> Julia Lopinto https://www.slicer.org/w/index.php?title=File:EasyClipPlanePosition.png&diff=41853 File:EasyClipPlanePosition.png 2015-06-22T16:49:13Z <p>Julia Lopinto: </p> <hr /> <div></div> Julia Lopinto https://www.slicer.org/w/index.php?title=File:EasyClipInterface.png&diff=41852 File:EasyClipInterface.png 2015-06-22T16:46:47Z <p>Julia Lopinto: uploaded a new version of &quot;File:EasyClipInterface.png&quot;</p> <hr /> <div></div> Julia Lopinto https://www.slicer.org/w/index.php?title=File:EasyClipInterface.png&diff=41851 File:EasyClipInterface.png 2015-06-22T16:45:46Z <p>Julia Lopinto: </p> <hr /> <div></div> Julia Lopinto https://www.slicer.org/w/index.php?title=File:EasyClipLogo.png&diff=41850 File:EasyClipLogo.png 2015-06-22T16:37:02Z <p>Julia Lopinto: </p> <hr /> <div></div> Julia Lopinto