https://www.slicer.org/w/api.php?action=feedcontributions&feedformat=atom&user=FranklinkSlicer Wiki - User contributions [en]2026-05-26T03:20:08ZUser contributionsMediaWiki 1.33.0https://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/TransformVisualizer&diff=34348Documentation/Nightly/Modules/TransformVisualizer2013-08-09T04:07:34Z<p>Franklink: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributors: Andras Lasso (PerkLab, Queen's University), Csaba Pinter (PerkLab, Queen's University)<br><br />
Contact: Andras Lasso, <email>lasso@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
|{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
{|<br />
|<br />
[[Image:TransformVisualizerLogo.png]]<br />
|<br />
The Transform Visualizer module visualizes transforms using various options. The module can visualize any transform (linear transform, B-spline deformable transform, any other non-linear transform) or vector volume.<br />
|<br />
|}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Visualize deformation fields<br />
* Visualize vector volumes<br />
* Visualize transforms<br />
<br />
{|align="center"<br />
|[[File:SlicerRT_DefFieldVisGlyphUI.png|thumb|320px|Transform Visualizer module UI with glyph visualization mode active]]<br />
|[[File:SlicerRT_DefFieldVisModels.png|thumb|700px|Transform Visualizer modes]]<br />
|}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
* IO<br />
** Input<br />
*** Deformation: The deformation which will be visualized. The deformation can be represented as either a vector volume or a transform (linear or non-linear) with a reference image.<br />
*** Reference Image: The reference image to be used with a selected transform to generate a deformation field. Enabled only when a transform is selected as the input deformation. The deformation field will be generated when both a valid deformation and a reference image are selected.<br />
** Output<br />
*** Output Model: A model to be selected or created that will contain the output.<br />
<br />
* Visualization Mode<br />
** Glyph: Generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid: Generates a cube grid that is warped by the deformation field<br />
** Block: Generates a rectangular model that is then warped by the deformation field<br />
** Contour: Generates isosurfaces according to the vector magnitudes of the deformation field<br />
** Glyph Slice: Projects the deformation field to a chosen slice view and generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid Slice: Projects the deformation field to a chosen slice view and generates a cube grid that is warped by the deformation field<br />
<br />
* Parameters<br />
** Glyph Options<br />
*** Number of Glyphs: Number of randomly placed glyphs to create<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scaling<br />
**** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
**** Directional Scaling: Scale glyph only along the vector direction<br />
**** Isotropic Scaling: Scale glyph in all directions<br />
*** Source: Model to be used as the glyph model; arrow, cone, and sphere are available and each have their own respective options<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
*** Spacing: Line spacing used to generate a cube grid<br />
** Block Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
** Contour Options<br />
*** Number of Contours: Number of contours to generate between the specified range values<br />
*** Range: Range to create contours within<br />
*** Decimate: Target decimation as a decimal percentage reduction in polygons (0 results in no decimation whereas 0.99 results in a target of 99% reduction in polygons)<br />
** Glyph Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Number of Glyphs: Number of randomly placed glyphs to create in total<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Spacing: Line spacing used to generate a square grid<br />
<br />
<!--<br />
{{documentation/{{documentation/version}}/module-parametersdescription}}<br />
--><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=File:TransformVisualizerLogo.png&diff=34347File:TransformVisualizerLogo.png2013-08-09T04:06:58Z<p>Franklink: uploaded a new version of "File:TransformVisualizerLogo.png"</p>
<hr />
<div>Temporary logo for the Transform Visualizer extension</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/TransformVisualizer&diff=34346Documentation/Nightly/Modules/TransformVisualizer2013-08-09T03:58:27Z<p>Franklink: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributors: Andras Lasso (PerkLab, Queen's University), Csaba Pinter (PerkLab, Queen's University)<br><br />
Contact: Andras Lasso, <email>lasso@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
|{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
<br />
The Transform Visualizer module visualizes transforms using various options. The module can visualize any transform (linear transform, B-spline deformable transform, any other non-linear transform) or vector volume.<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Visualize deformation fields<br />
* Visualize vector volumes<br />
* Visualize transforms<br />
<br />
{|align="center"<br />
|[[File:SlicerRT_DefFieldVisGlyphUI.png|thumb|320px|Transform Visualizer module UI with glyph visualization mode active]]<br />
|[[File:SlicerRT_DefFieldVisModels.png|thumb|700px|Transform Visualizer modes]]<br />
|}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
* IO<br />
** Input<br />
*** Deformation: The deformation which will be visualized. The deformation can be represented as either a vector volume or a transform (linear or non-linear) with a reference image.<br />
*** Reference Image: The reference image to be used with a selected transform to generate a deformation field. Enabled only when a transform is selected as the input deformation. The deformation field will be generated when both a valid deformation and a reference image are selected.<br />
** Output<br />
*** Output Model: A model to be selected or created that will contain the output.<br />
<br />
* Visualization Mode<br />
** Glyph: Generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid: Generates a cube grid that is warped by the deformation field<br />
** Block: Generates a rectangular model that is then warped by the deformation field<br />
** Contour: Generates isosurfaces according to the vector magnitudes of the deformation field<br />
** Glyph Slice: Projects the deformation field to a chosen slice view and generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid Slice: Projects the deformation field to a chosen slice view and generates a cube grid that is warped by the deformation field<br />
<br />
* Parameters<br />
** Glyph Options<br />
*** Number of Glyphs: Number of randomly placed glyphs to create<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scaling<br />
**** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
**** Directional Scaling: Scale glyph only along the vector direction<br />
**** Isotropic Scaling: Scale glyph in all directions<br />
*** Source: Model to be used as the glyph model; arrow, cone, and sphere are available and each have their own respective options<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
*** Spacing: Line spacing used to generate a cube grid<br />
** Block Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
** Contour Options<br />
*** Number of Contours: Number of contours to generate between the specified range values<br />
*** Range: Range to create contours within<br />
*** Decimate: Target decimation as a decimal percentage reduction in polygons (0 results in no decimation whereas 0.99 results in a target of 99% reduction in polygons)<br />
** Glyph Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Number of Glyphs: Number of randomly placed glyphs to create in total<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Spacing: Line spacing used to generate a square grid<br />
<br />
<!--<br />
{{documentation/{{documentation/version}}/module-parametersdescription}}<br />
--><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/TransformVisualizer&diff=34345Documentation/Nightly/Modules/TransformVisualizer2013-08-09T03:58:12Z<p>Franklink: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributors: Andras Lasso (PerkLab, Queen's University), Csaba Pinter (PerkLab, Queen's University)<br><br />
Contact: Andras Lasso, <email>lasso@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
|{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
{|<br />
|<br />
[[Image:TransformVisualizerLogo.png]]<br />
|<br />
The Transform Visualizer module visualizes transforms using various options. The module can visualize any transform (linear transform, B-spline deformable transform, any other non-linear transform) or vector volume.<br />
|<br />
|}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Visualize deformation fields<br />
* Visualize vector volumes<br />
* Visualize transforms<br />
<br />
{|align="center"<br />
|[[File:SlicerRT_DefFieldVisGlyphUI.png|thumb|320px|Transform Visualizer module UI with glyph visualization mode active]]<br />
|[[File:SlicerRT_DefFieldVisModels.png|thumb|700px|Transform Visualizer modes]]<br />
|}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
* IO<br />
** Input<br />
*** Deformation: The deformation which will be visualized. The deformation can be represented as either a vector volume or a transform (linear or non-linear) with a reference image.<br />
*** Reference Image: The reference image to be used with a selected transform to generate a deformation field. Enabled only when a transform is selected as the input deformation. The deformation field will be generated when both a valid deformation and a reference image are selected.<br />
** Output<br />
*** Output Model: A model to be selected or created that will contain the output.<br />
<br />
* Visualization Mode<br />
** Glyph: Generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid: Generates a cube grid that is warped by the deformation field<br />
** Block: Generates a rectangular model that is then warped by the deformation field<br />
** Contour: Generates isosurfaces according to the vector magnitudes of the deformation field<br />
** Glyph Slice: Projects the deformation field to a chosen slice view and generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid Slice: Projects the deformation field to a chosen slice view and generates a cube grid that is warped by the deformation field<br />
<br />
* Parameters<br />
** Glyph Options<br />
*** Number of Glyphs: Number of randomly placed glyphs to create<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scaling<br />
**** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
**** Directional Scaling: Scale glyph only along the vector direction<br />
**** Isotropic Scaling: Scale glyph in all directions<br />
*** Source: Model to be used as the glyph model; arrow, cone, and sphere are available and each have their own respective options<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
*** Spacing: Line spacing used to generate a cube grid<br />
** Block Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
** Contour Options<br />
*** Number of Contours: Number of contours to generate between the specified range values<br />
*** Range: Range to create contours within<br />
*** Decimate: Target decimation as a decimal percentage reduction in polygons (0 results in no decimation whereas 0.99 results in a target of 99% reduction in polygons)<br />
** Glyph Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Number of Glyphs: Number of randomly placed glyphs to create in total<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Spacing: Line spacing used to generate a square grid<br />
<br />
<!--<br />
{{documentation/{{documentation/version}}/module-parametersdescription}}<br />
--><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=File:TransformVisualizerLogo.png&diff=34344File:TransformVisualizerLogo.png2013-08-09T03:46:10Z<p>Franklink: uploaded a new version of "File:TransformVisualizerLogo.png":&#32;Updated Transform Visualizer Extension logo</p>
<hr />
<div>Temporary logo for the Transform Visualizer extension</div>Franklinkhttps://www.slicer.org/w/index.php?title=File:TransformVisualizerLogo.png&diff=34336File:TransformVisualizerLogo.png2013-08-08T01:14:39Z<p>Franklink: Temporary logo for the Transform Visualizer extension</p>
<hr />
<div>Temporary logo for the Transform Visualizer extension</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/DeformationFieldVisualizer&diff=34331Documentation/Nightly/Modules/DeformationFieldVisualizer2013-08-07T22:28:29Z<p>Franklink: Redirected page to Documentation/Nightly/Modules/TransformVisualizer</p>
<hr />
<div>#REDIRECT [[Documentation/Nightly/Modules/TransformVisualizer]]</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/TransformVisualizer&diff=34330Documentation/Nightly/Modules/TransformVisualizer2013-08-07T22:27:40Z<p>Franklink: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributors: Andras Lasso (PerkLab, Queen's University), Csaba Pinter (PerkLab, Queen's University)<br><br />
Contact: Andras Lasso, <email>lasso@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
|{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
The Transform Visualizer module visualizes transforms using various options. The module can visualize any transform (linear transform, B-spline deformable transform, any other non-linear transform) or vector volume.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Visualize deformation fields<br />
* Visualize vector volumes<br />
* Visualize transforms<br />
<br />
{|align="center"<br />
|[[File:SlicerRT_DefFieldVisGlyphUI.png|thumb|320px|Transform Visualizer module UI with glyph visualization mode active]]<br />
|[[File:SlicerRT_DefFieldVisModels.png|thumb|700px|Transform Visualizer modes]]<br />
|}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
* IO<br />
** Input<br />
*** Deformation: The deformation which will be visualized. The deformation can be represented as either a vector volume or a transform (linear or non-linear) with a reference image.<br />
*** Reference Image: The reference image to be used with a selected transform to generate a deformation field. Enabled only when a transform is selected as the input deformation. The deformation field will be generated when both a valid deformation and a reference image are selected.<br />
** Output<br />
*** Output Model: A model to be selected or created that will contain the output.<br />
<br />
* Visualization Mode<br />
** Glyph: Generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid: Generates a cube grid that is warped by the deformation field<br />
** Block: Generates a rectangular model that is then warped by the deformation field<br />
** Contour: Generates isosurfaces according to the vector magnitudes of the deformation field<br />
** Glyph Slice: Projects the deformation field to a chosen slice view and generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid Slice: Projects the deformation field to a chosen slice view and generates a cube grid that is warped by the deformation field<br />
<br />
* Parameters<br />
** Glyph Options<br />
*** Number of Glyphs: Number of randomly placed glyphs to create<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scaling<br />
**** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
**** Directional Scaling: Scale glyph only along the vector direction<br />
**** Isotropic Scaling: Scale glyph in all directions<br />
*** Source: Model to be used as the glyph model; arrow, cone, and sphere are available and each have their own respective options<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
*** Spacing: Line spacing used to generate a cube grid<br />
** Block Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
** Contour Options<br />
*** Number of Contours: Number of contours to generate between the specified range values<br />
*** Range: Range to create contours within<br />
*** Decimate: Target decimation as a decimal percentage reduction in polygons (0 results in no decimation whereas 0.99 results in a target of 99% reduction in polygons)<br />
** Glyph Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Number of Glyphs: Number of randomly placed glyphs to create in total<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Spacing: Line spacing used to generate a square grid<br />
<br />
<!--<br />
{{documentation/{{documentation/version}}/module-parametersdescription}}<br />
--><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/TransformVisualizer&diff=34329Documentation/Nightly/Extensions/TransformVisualizer2013-08-07T22:24:32Z<p>Franklink: Redirected page to Documentation/Nightly/Modules/TransformVisualizer</p>
<hr />
<div>#REDIRECT [[Documentation/Nightly/Modules/TransformVisualizer]]</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions&diff=34328Documentation/Nightly/Extensions2013-08-07T22:23:53Z<p>Franklink: /* Cat 2 */</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<noinclude><br />
__TOC__<br />
</noinclude>= Extensions by Category =<br />
<br />
==Cat 1==<br />
<br />
==Cat 2==<br />
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br />
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Andras Lasso, Kevin Wang, Steve Pieper)<br />
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br />
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br />
** [[Documentation/{{documentation/version}}/Modules/PatientHierarchy|Patient hierarchy]]<br />
** [[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Deformation field visualizer]]<br />
** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] [[image:UnderConstruction.png|tumb|10px]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br />
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br />
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br />
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br />
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br />
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)<br />
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br />
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br />
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br />
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br />
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br />
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br />
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br />
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br />
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br />
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br />
* [[Documentation/{{documentation/version}}/Extensions/PathPlanner|PathPlanner]] (Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/VisuaLine|VisuaLine]] (Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br />
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br />
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)<br />
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)<br />
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Andinet Enquobahrie, Luis G. Torres)<br />
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)<br />
<br />
==Cat 3==<br />
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)<br />
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)<br />
<noinclude><br />
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br />
</noinclude></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions&diff=34327Documentation/Nightly/Extensions2013-08-07T22:23:16Z<p>Franklink: /* Cat 2 */</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<noinclude><br />
__TOC__<br />
</noinclude>= Extensions by Category =<br />
<br />
==Cat 1==<br />
<br />
==Cat 2==<br />
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br />
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Andras Lasso, Kevin Wang, Steve Pieper)<br />
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br />
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br />
** [[Documentation/{{documentation/version}}/Modules/PatientHierarchy|Patient hierarchy]]<br />
** [[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Deformation field visualizer]]<br />
** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] [[image:UnderConstruction.png|tumb|10px]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br />
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br />
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br />
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br />
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br />
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)<br />
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br />
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br />
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br />
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br />
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br />
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br />
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br />
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br />
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br />
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br />
* [[Documentation/{{documentation/version}}/Extensions/PathPlanner|PathPlanner]] (Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/VisuaLine|VisuaLine]] (Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br />
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br />
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)<br />
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)<br />
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Andinet Enquobahrie, Luis G. Torres)<br />
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|PlusRemote]] (Franklin King, Tamas Ungi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)<br />
<br />
==Cat 3==<br />
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)<br />
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)<br />
<noinclude><br />
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br />
</noinclude></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/PlusRemote&diff=34247Documentation/Nightly/Modules/PlusRemote2013-08-05T14:20:44Z<p>Franklink: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributor: Tamas Ungi (PerkLab, Queen's University)<br><br />
Contact: Tamas Ungi, <email>ungi@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
Convenience module for sending commands through OpenIGTLink Remote to PLUS. Requires OpenIGTLink Remote module available in the SlicerIGT extension. See [https://www.assembla.com/spaces/plus/wiki/PlusServer_commands https://www.assembla.com/spaces/plus/wiki/PlusServer_commands] for more information about PLUS server commands.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Sending Recording and Transform Update commands to PLUS server<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
[[File:PlusRemoteScreenshot.png]]<br />
<br />
*Recording: Start and stop recording<br />
*Transform Update: Update transform from what is set in the PLUS config file; Requires name of transform node to match an existing transform in the PLUS config file<br />
*Reply: Feedback message from PLUS server<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
{{documentation/{{documentation/version}}/module-developerinfo}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/PlusRemote&diff=34246Documentation/Nightly/Modules/PlusRemote2013-08-05T14:19:04Z<p>Franklink: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributor: Tamas Ungi (PerkLab, Queen's University)<br><br />
Contact: Tamas Ungi, <email>ungi@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
Convenience module for sending commands through OpenIGTLink Remote to PLUS. Requires OpenIGTLink Remote module available in the SlicerIGT extension. See [https://www.assembla.com/spaces/plus/wiki/PlusServer_commands https://www.assembla.com/spaces/plus/wiki/PlusServer_commands] for more information about PLUS server commands.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Sending Recording and Transform Update commands to PLUS server<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
[[File:PlusRemoteScreenshot.png]]<br />
<br />
*Recording: Start and stop recording<br />
*Update Transform: Update transform matrix; Requires name of transform node to match an existing transform in the PLUS config file<br />
*Reply: Feedback message from PLUS server<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
{{documentation/{{documentation/version}}/module-developerinfo}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/PlusRemote&diff=34244Documentation/Nightly/Modules/PlusRemote2013-08-05T06:46:24Z<p>Franklink: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributor: Tamas Ungi (PerkLab, Queen's University)<br><br />
Contact: Tamas Ungi, <email>ungi@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
Convenience module for sending commands through OpenIGTLink Remote to PLUS. Requires OpenIGTLink Remote module available in the SlicerIGT extension. See [https://www.assembla.com/spaces/plus/wiki/PlusServer_commands https://www.assembla.com/spaces/plus/wiki/PlusServer_commands] for more information about PLUS server commands.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Sending Recording and Transform Update commands to PLUS server<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
[[File:PlusRemoteScreenshot.png]]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
{{documentation/{{documentation/version}}/module-developerinfo}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/PlusRemote&diff=34243Documentation/Nightly/Modules/PlusRemote2013-08-05T06:43:59Z<p>Franklink: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributor: Tamas Ungi (PerkLab, Queen's University)<br><br />
Contact: Tamas Ungi, <email>ungi@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
Convenience module for sending commands through OpenIGTLink Remote to PLUS. Requires OpenIGTLink Remote module available in the SlicerIGT extension. See [https://www.assembla.com/spaces/plus/wiki/PlusServer_commands] for more information about PLUS server commands.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Sending Recording and Transform Update commands to PLUS server<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
[[File:PlusRemoteScreenshot.png]]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
{{documentation/{{documentation/version}}/module-developerinfo}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/PlusRemote&diff=34242Documentation/Nightly/Modules/PlusRemote2013-08-05T06:42:21Z<p>Franklink: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributor: Tamas Ungi (PerkLab, Queen's University)<br><br />
Contact: Tamas Ungi, <email>ungi@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
Convenience module for sending commands through OpenIGTLink Remote to PLUS. Requires OpenIGTLink Remote module available in the SlicerIGT extension<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Sending Recording and Transform Update commands to PLUS server<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
[[File:PlusRemoteScreenshot.png]]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
{{documentation/{{documentation/version}}/module-developerinfo}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/PlusRemote&diff=34241Documentation/Nightly/Modules/PlusRemote2013-08-05T06:41:56Z<p>Franklink: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributor: Tamas Ungi (PerkLab, Queen's University)<br><br />
Contact: Tamas Ungi, <email>ungi@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
Convenience module for sending commands through OpenIGTLink Remote to PLUS. Requires OpenIGTLink Remote module available in the SlicerIGT extension<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Sending Recording and Transform Update commands to PLUS server<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
[[File:PlusRemoteScreenshot.png]]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
{{documentation/{{documentation/version}}/module-developerinfo}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/PlusRemote&diff=34240Documentation/Nightly/Modules/PlusRemote2013-08-05T06:39:50Z<p>Franklink: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributor: Tamas Ungi (PerkLab, Queen's University)<br><br />
Contact: Tamas Ungi, <email>ungi@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
Convenience module for sending commands through OpenIGTLink Remote to PLUS. Requires OpenIGTLink Remote module available in the SlicerIGT extension<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Sending Recording and Transform Update commands to PLUS server<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
[[File:http://www.slicer.org/slicerWiki/images/c/ca/PlusRemoteScreenshot.png]]<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
{{documentation/{{documentation/version}}/module-developerinfo}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/PlusRemote&diff=34239Documentation/Nightly/Modules/PlusRemote2013-08-05T06:38:09Z<p>Franklink: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributor: Tamas Ungi (PerkLab, Queen's University)<br><br />
Contact: Tamas Ungi, <email>ungi@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
Convenience module for sending commands through OpenIGTLink Remote to PLUS. Requires OpenIGTLink Remote module available in the SlicerIGT extension<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Sending Recording and Transform Update commands to PLUS server<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
{{documentation/{{documentation/version}}/module-developerinfo}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/PlusRemote&diff=34238Documentation/Nightly/Extensions/PlusRemote2013-08-05T06:36:56Z<p>Franklink: Redirected page to Documentation/Nightly/Modules/PlusRemote</p>
<hr />
<div>#REDIRECT [[Documentation/Nightly/Modules/PlusRemote]]</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions&diff=34237Documentation/Nightly/Extensions2013-08-05T06:35:56Z<p>Franklink: /* Cat 2 */</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<noinclude><br />
__TOC__<br />
</noinclude>= Extensions by Category =<br />
<br />
==Cat 1==<br />
<br />
==Cat 2==<br />
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br />
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Andras Lasso, Kevin Wang, Steve Pieper)<br />
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br />
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br />
** [[Documentation/{{documentation/version}}/Modules/PatientHierarchy|Patient hierarchy]]<br />
** [[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Deformation field visualizer]]<br />
** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] [[image:UnderConstruction.png|tumb|10px]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br />
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br />
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br />
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br />
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br />
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)<br />
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br />
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br />
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br />
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br />
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br />
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br />
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br />
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br />
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br />
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br />
* [[Documentation/{{documentation/version}}/Extensions/PathPlanner|PathPlanner]] (Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/VisuaLine|VisuaLine]] (Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br />
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br />
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)<br />
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)<br />
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Andinet Enquobahrie, Luis G. Torres)<br />
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|PlusRemote]] (Franklin King, Tamas Ungi)<br />
<br />
==Cat 3==<br />
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)<br />
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)<br />
<noinclude><br />
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br />
</noinclude></div>Franklinkhttps://www.slicer.org/w/index.php?title=File:PlusRemoteLogo.png&diff=34236File:PlusRemoteLogo.png2013-08-05T02:02:56Z<p>Franklink: uploaded a new version of "File:PlusRemoteLogo.png"</p>
<hr />
<div>Logo for the Plus Remote extension.</div>Franklinkhttps://www.slicer.org/w/index.php?title=File:PlusRemoteLogo.png&diff=34235File:PlusRemoteLogo.png2013-08-05T01:44:42Z<p>Franklink: Logo for the Plus Remote extension.</p>
<hr />
<div>Logo for the Plus Remote extension.</div>Franklinkhttps://www.slicer.org/w/index.php?title=File:PlusRemoteScreenshot.png&diff=34234File:PlusRemoteScreenshot.png2013-08-05T00:11:05Z<p>Franklink: Screenshot for the Plus Remote extension.</p>
<hr />
<div>Screenshot for the Plus Remote extension.</div>Franklinkhttps://www.slicer.org/w/index.php?title=File:ScoliosisLogo.png&diff=33783File:ScoliosisLogo.png2013-07-04T17:14:31Z<p>Franklink: uploaded a new version of "File:ScoliosisLogo.png"</p>
<hr />
<div>Logo for the Scoliosis extension</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions&diff=33774Documentation/Nightly/Extensions2013-07-03T20:03:27Z<p>Franklink: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<noinclude><br />
__TOC__<br />
</noinclude>= Extensions by Category =<br />
<br />
==Cat 1==<br />
<br />
==Cat 2==<br />
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br />
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Andras Lasso, Kevin Wang, Steve Pieper)<br />
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br />
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br />
** [[Documentation/{{documentation/version}}/Modules/PatientHierarchy|Patient hierarchy]]<br />
** [[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Deformation field visualizer]]<br />
** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] [[image:UnderConstruction.png|tumb|10px]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br />
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br />
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br />
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br />
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br />
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)<br />
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br />
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br />
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br />
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br />
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br />
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br />
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br />
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br />
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br />
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br />
* [[Documentation/{{documentation/version}}/Extensions/PathPlanner|PathPlanner]] (Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/VisuaLine|VisuaLine]] (Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br />
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br />
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)<br />
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)<br />
<br />
==Cat 3==<br />
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)<br />
<br />
<noinclude><br />
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br />
</noinclude></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/Scoliosis&diff=33771Documentation/Nightly/Extensions/Scoliosis2013-07-03T18:27:43Z<p>Franklink: Redirected page to Documentation/Nightly/Modules/SpinalCurvatureMeasurement</p>
<hr />
<div>#REDIRECT [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement]]</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/Scoliosis&diff=33770Documentation/Nightly/Extensions/Scoliosis2013-07-03T18:27:36Z<p>Franklink: Undo revision 33767 by Franklink (Talk)</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
#REDIRECT [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement]]</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/Scoliosis&diff=33769Documentation/Nightly/Extensions/Scoliosis2013-07-03T18:27:23Z<p>Franklink: Undo revision 33768 by Franklink (Talk)</p>
<hr />
<div>#REDIRECT [[Documentation/Nightly/Modules/SkullStripper]]</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/Scoliosis&diff=33768Documentation/Nightly/Extensions/Scoliosis2013-07-03T18:27:01Z<p>Franklink: Redirected page to Documentation/Nightly/Modules/SpinalCurvatureMeasurement</p>
<hr />
<div>#REDIRECT [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement]]</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/Scoliosis&diff=33767Documentation/Nightly/Extensions/Scoliosis2013-07-03T18:26:29Z<p>Franklink: Redirected page to Documentation/Nightly/Modules/SkullStripper</p>
<hr />
<div>#REDIRECT [[Documentation/Nightly/Modules/SkullStripper]]</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/SpinalCurvatureMeasurement&diff=33766Documentation/Nightly/Modules/SpinalCurvatureMeasurement2013-07-03T18:24:42Z<p>Franklink: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> <!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributor: Tamas Ungi (PerkLab, Queen's University)<br><br />
Contact: Tamas Ungi, <email>ungi@cs.queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
{{documentation/{{documentation/version}}/module-developerinfo}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions/Scoliosis&diff=33763Documentation/Nightly/Extensions/Scoliosis2013-07-03T18:07:10Z<p>Franklink: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude> #REDIRECT Documentation/Nightly/Modules/SpinalCurvatureMeasurement'</p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
#REDIRECT [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement]]</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Extensions&diff=33762Documentation/Nightly/Extensions2013-07-03T18:06:35Z<p>Franklink: </p>
<hr />
<div><noinclude>{{documentation/versioncheck}}</noinclude><br />
<noinclude><br />
__TOC__<br />
</noinclude>= Extensions by Category =<br />
<br />
==Cat 1==<br />
<br />
==Cat 2==<br />
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)<br />
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)<br />
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Andras Lasso, Kevin Wang, Steve Pieper)<br />
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]<br />
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]<br />
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]<br />
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]<br />
** [[Documentation/{{documentation/version}}/Modules/PatientHierarchy|Patient hierarchy]]<br />
** [[Documentation/{{documentation/version}}/Modules/DeformationFieldVisualizer|Deformation field visualizer]]<br />
** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] [[image:UnderConstruction.png|tumb|10px]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]<br />
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]<br />
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)<br />
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)<br />
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)<br />
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)<br />
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)<br />
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)<br />
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)<br />
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)<br />
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)<br />
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)<br />
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)<br />
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)<br />
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)<br />
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)<br />
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)<br />
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]<br />
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]<br />
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)<br />
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)<br />
* [[Documentation/{{documentation/version}}/Extensions/PathPlanner|PathPlanner]] (Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/VisuaLine|VisuaLine]] (Laurent Chauvin)<br />
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)<br />
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)<br />
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)<br />
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)<br />
<br />
==Cat 3==<br />
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)<br />
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)<br />
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)<br />
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)<br />
<br />
<noinclude><br />
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}<br />
</noinclude></div>Franklinkhttps://www.slicer.org/w/index.php?title=File:ScoliosisScreenshot.png&diff=33748File:ScoliosisScreenshot.png2013-07-02T22:05:00Z<p>Franklink: Screenshot for the Scoliosis extension</p>
<hr />
<div>Screenshot for the Scoliosis extension</div>Franklinkhttps://www.slicer.org/w/index.php?title=File:ScoliosisLogo.png&diff=33747File:ScoliosisLogo.png2013-07-02T22:04:33Z<p>Franklink: Logo for the Scoliosis extension</p>
<hr />
<div>Logo for the Scoliosis extension</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/DeformationFieldVisualizer&diff=31861Documentation/Nightly/Modules/DeformationFieldVisualizer2013-06-06T20:26:42Z<p>Franklink: </p>
<hr />
<div><!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributors: Andras Lasso (PerkLab, Queen's University), Csaba Pinter (PerkLab, Queen's University)<br><br />
Contact: Franklin King, <email>franklin.king@queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
|{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
The Deformation Field Visualizer module visualizes transforms using various visualization options. Although the name of the module may suggest that it can only visualize deformation fields, '''the module can visualize any transforms (linear transform, B-spline deformable transform, any other non-linear transform) or vector volumes'''.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
* Visualize deformation fields<br />
* Visualize vector volumes<br />
* Visualize transforms<br />
<br />
{|align="center"<br />
|[[File:SlicerRT_DefFieldVisGlyphUI.png|thumb|320px|Deformation Field Visualizer module UI with glyph visualization mode active]]<br />
|[[File:SlicerRT_DefFieldVisModels.png|thumb|700px|Deformation Field Visualizer modes]]<br />
|}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
* IO<br />
** Input<br />
*** Deformation: The deformation field which will be visualized. The deformation field can be represented as either a vector volume or a transform (linear or non-linear) with a reference image.<br />
*** Reference Image: The reference image to be used with a selected transform to generate a deformation field. Enabled only when a transform is selected as the input deformation. The deformation field will be generated when both a valid deformation and a reference image are selected.<br />
** Output<br />
*** Output Model: A model to be selected or created that will contain the output.<br />
<br />
* Visualization Mode<br />
** Glyph: Generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid: Generates a cube grid that is warped by the deformation field<br />
** Block: Generates a rectangular model that is then warped by the deformation field<br />
** Contour: Generates isosurfaces according to the vector magnitudes of the deformation field<br />
** Glyph Slice: Projects the deformation field to a chosen slice view and generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid Slice: Projects the deformation field to a chosen slice view and generates a cube grid that is warped by the deformation field<br />
<br />
* Parameters<br />
** Glyph Options<br />
*** Number of Glyphs: Number of randomly placed glyphs to create<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scaling<br />
**** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
**** Directional Scaling: Scale glyph only along the vector direction<br />
**** Isotropic Scaling: Scale glyph in all directions<br />
*** Source: Model to be used as the glyph model; arrow, cone, and sphere are available and each have their own respective options<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
*** Spacing: Line spacing used to generate a cube grid<br />
** Block Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
** Contour Options<br />
*** Number of Contours: Number of contours to generate between the specified range values<br />
*** Range: Range to create contours within<br />
*** Decimate: Target decimation as a decimal percentage reduction in polygons (0 results in no decimation whereas 0.99 results in a target of 99% reduction in polygons)<br />
** Glyph Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Number of Glyphs: Number of randomly placed glyphs to create in total<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Spacing: Line spacing used to generate a square grid<br />
<br />
<!--<br />
{{documentation/{{documentation/version}}/module-parametersdescription}}<br />
--><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/DeformationFieldVisualizer&diff=31858Documentation/Nightly/Modules/DeformationFieldVisualizer2013-06-06T19:48:56Z<p>Franklink: </p>
<hr />
<div><!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributors: Andras Lasso (PerkLab, Queen's University), Csaba Pinter (PerkLab, Queen's University)<br><br />
Contact: Franklin King, <email>franklin.king@queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
|{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
The Deformation Field Visualizer module visualizes deformation fields using various visualization options. The module recognizes vector volumes, linear transforms, and non-linear transforms as deformation fields.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
Visualize deformation fields<br />
{|align="center"<br />
|[[File:SlicerRT_DefFieldVisGlyphUI.png|thumb|320px|Deformation Field Visualizer module UI with glyph visualization mode active]]<br />
|[[File:SlicerRT_DefFieldVisModels.png|thumb|700px|Deformation Field Visualizer modes]]<br />
|}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
* IO<br />
** Input<br />
*** Deformation: The deformation field which will be visualized. The deformation field can be represented as either a vector volume or a transform (linear or non-linear) with a reference image.<br />
*** Reference Image: The reference image to be used with a selected transform to generate a deformation field. Enabled only when a transform is selected as the input deformation. The deformation field will be generated when both a valid deformation and a reference image are selected.<br />
** Output<br />
*** Output Model: A model to be selected or created that will contain the output.<br />
<br />
* Visualization Mode<br />
** Glyph: Generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid: Generates a cube grid that is warped by the deformation field<br />
** Block: Generates a rectangular model that is then warped by the deformation field<br />
** Contour: Generates isosurfaces according to the vector magnitudes of the deformation field<br />
** Glyph Slice: Projects the deformation field to a chosen slice view and generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid Slice: Projects the deformation field to a chosen slice view and generates a cube grid that is warped by the deformation field<br />
<br />
* Parameters<br />
** Glyph Options<br />
*** Number of Glyphs: Number of randomly placed glyphs to create<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scaling<br />
**** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
**** Directional Scaling: Scale glyph only along the vector direction<br />
**** Isotropic Scaling: Scale glyph in all directions<br />
*** Source: Model to be used as the glyph model; arrow, cone, and sphere are available and each have their own respective options<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
*** Spacing: Line spacing used to generate a cube grid<br />
** Block Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
** Contour Options<br />
*** Number of Contours: Number of contours to generate between the specified range values<br />
*** Range: Range to create contours within<br />
*** Decimate: Target decimation as a decimal percentage reduction in polygons (0 results in no decimation whereas 0.99 results in a target of 99% reduction in polygons)<br />
** Glyph Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Number of Glyphs: Number of randomly placed glyphs to create in total<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Spacing: Line spacing used to generate a square grid<br />
<br />
<!--<br />
{{documentation/{{documentation/version}}/module-parametersdescription}}<br />
--><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/DeformationFieldVisualizer&diff=31857Documentation/Nightly/Modules/DeformationFieldVisualizer2013-06-06T19:46:57Z<p>Franklink: </p>
<hr />
<div><!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributors: Andras Lasso (PerkLab, Queen's University), Csaba Pinter (PerkLab, Queen's University)<br><br />
Contact: Franklin King, <email>franklin.king@queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
|{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
The {{documentation/modulename}} module visualizes deformation fields using various visualization options.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
Visualize deformation fields<br />
{|align="center"<br />
|[[File:SlicerRT_DefFieldVisGlyphUI.png|thumb|320px|Deformation Field Visualizer module UI with glyph visualization mode active]]<br />
|[[File:SlicerRT_DefFieldVisModels.png|thumb|700px|Deformation Field Visualizer modes]]<br />
|}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
* IO<br />
** Input<br />
*** Deformation: The deformation field which will be visualized. The deformation field can be represented as either a vector volume or a transform (linear or non-linear) with a reference image.<br />
*** Reference Image: The reference image to be used with a selected transform to generate a deformation field. Enabled only when a transform is selected as the input deformation. The deformation field will be generated when both a valid deformation and a reference image are selected.<br />
** Output<br />
*** Output Model: A model to be selected or created that will contain the output.<br />
<br />
* Visualization Mode<br />
** Glyph: Generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid: Generates a cube grid that is warped by the deformation field<br />
** Block: Generates a rectangular model that is then warped by the deformation field<br />
** Contour: Generates isosurfaces according to the vector magnitudes of the deformation field<br />
** Glyph Slice: Projects the deformation field to a chosen slice view and generates glyphs oriented to the vector direction and scaled to the vector magnitude<br />
** Grid Slice: Projects the deformation field to a chosen slice view and generates a cube grid that is warped by the deformation field<br />
<br />
* Parameters<br />
** Glyph Options<br />
*** Number of Glyphs: Number of randomly placed glyphs to create<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scaling<br />
**** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
**** Directional Scaling: Scale glyph only along the vector direction<br />
**** Isotropic Scaling: Scale glyph in all directions<br />
*** Source: Model to be used as the glyph model; arrow, cone, and sphere are available and each have their own respective options<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
*** Spacing: Line spacing used to generate a cube grid<br />
** Block Options<br />
*** Scale Factor: Multiplier for the scale of the deformation<br />
** Contour Options<br />
*** Number of Contours: Number of contours to generate between the specified range values<br />
*** Range: Range to create contours within<br />
*** Decimate: Target decimation as a decimal percentage reduction in polygons (0 results in no decimation whereas 0.99 results in a target of 99% reduction in polygons)<br />
** Glyph Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Number of Glyphs: Number of randomly placed glyphs to create in total<br />
*** Magnitude Threshold: Only vectors with a magnitude within the specified range will be represented with a glyph<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Random Seed: Seed used for random placement of glyphs<br />
** Grid Slice Options<br />
*** Slice: Slice view to orient and project the glyphs to<br />
*** Scale Factor: Multiplier for size of glyph relative to vector magnitude<br />
*** Spacing: Line spacing used to generate a square grid<br />
<br />
<!--<br />
{{documentation/{{documentation/version}}/module-parametersdescription}}<br />
--><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/DeformationFieldVisualizer&diff=31856Documentation/Nightly/Modules/DeformationFieldVisualizer2013-06-06T18:45:10Z<p>Franklink: </p>
<hr />
<div><!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributors: Andras Lasso (PerkLab, Queen's University), Csaba Pinter (PerkLab, Queen's University)<br><br />
Contact: Franklin King, <email>franklin.king@queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
|{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
The {{documentation/modulename}} module visualizes deformation fields using various visualization options.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
Visualize deformation fields<br />
{|align="center"<br />
|[[File:SlicerRT_DefFieldVisGlyphUI.png|thumb|320px|Deformation Field Visualizer module UI with glyph visualization mode active]]<br />
|[[File:SlicerRT_DefFieldVisModels.png|thumb|700px|Deformation Field Visualizer modes]]<br />
|}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
N/A<br />
<!--<br />
{{documentation/{{documentation/version}}/module-parametersdescription}}<br />
--><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
{{documentation/{{documentation/version}}/module-developerinfo}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=File:SlicerRT_DefFieldVisModels.png&diff=31855File:SlicerRT DefFieldVisModels.png2013-06-06T18:40:10Z<p>Franklink: Models created from each visualization mode of the Deformation Field Visualizer module.</p>
<hr />
<div>Models created from each visualization mode of the Deformation Field Visualizer module.</div>Franklinkhttps://www.slicer.org/w/index.php?title=File:SlicerRT_DefFieldVisGlyphUI.png&diff=31854File:SlicerRT DefFieldVisGlyphUI.png2013-06-06T18:39:33Z<p>Franklink: UI of glyph visualization mode for the Deformation Field Visualizer module.</p>
<hr />
<div>UI of glyph visualization mode for the Deformation Field Visualizer module.</div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/DeformationFieldVisualizer&diff=31370Documentation/Nightly/Modules/DeformationFieldVisualizer2013-04-30T01:20:53Z<p>Franklink: </p>
<hr />
<div><!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributors: Andras Lasso (PerkLab, Queen's University), Csaba Pinter (PerkLab, Queen's University)<br><br />
Contact: Franklin King, <email>franklin.king@queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
|{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
The {{documentation/modulename}} module visualizes deformation fields using various visualization options.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
N/A<br />
<!--<br />
{{documentation/{{documentation/version}}/module-parametersdescription}}<br />
--><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
{{documentation/{{documentation/version}}/module-developerinfo}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklinkhttps://www.slicer.org/w/index.php?title=Documentation/Nightly/Modules/DeformationFieldVisualizer&diff=31369Documentation/Nightly/Modules/DeformationFieldVisualizer2013-04-29T17:24:27Z<p>Franklink: Created page with '<!-- ---------------------------- --> {{documentation/{{documentation/version}}/module-header}} <!-- ---------------------------- --> <!-- ---------------------------- --> {{doc…'</p>
<hr />
<div><!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-header}}<br />
<!-- ---------------------------- --><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}<br />
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}<br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.<br><br />
Author: Franklin King (PerkLab, Queen's University)<br><br />
Contributors: Andras Lasso (PerkLab, Queen's University), Csaba Pinter (PerkLab, Queen's University)<br><br />
Contact: Franklin King, <email>franklin.king@queensu.ca</email><br><br />
{{documentation/{{documentation/version}}/module-introduction-row}}<br />
{{documentation/{{documentation/version}}/module-introduction-logo-gallery<br />
|{{collaborator|logo|cco}}|{{collaborator|longname|cco}}<br />
|{{collaborator|logo|sparkit}}|{{collaborator|longname|sparkit}}<br />
}}<br />
{{documentation/{{documentation/version}}/module-introduction-end}}<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Module Description}}<br />
The {{documentation/modulename}} visualizes deformation fields using various visualization options.<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Use Cases}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Tutorials}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Panels and their use}}<br />
N/A<br />
<!--<br />
{{documentation/{{documentation/version}}/module-parametersdescription}}<br />
--><br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Similar Modules}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|References}}<br />
N/A<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-section|Information for Developers}}<br />
{{documentation/{{documentation/version}}/module-developerinfo}}<br />
<br />
<br />
<!-- ---------------------------- --><br />
{{documentation/{{documentation/version}}/module-footer}}<br />
<!-- ---------------------------- --></div>Franklink