Slicer Wiki - User contributions [en]

Documentation/Nightly/Modules/KidneyStoneCalculator

2019-11-14T16:27:36Z

Fpanthier:

<noinclude>{{documentation/versioncheck}}
</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

 
'''Authors:''' Frédéric Panthier (1 & 2), Lounès Illoul (3), Laurent Berthe (3), Steeve Doizi (1), Oliver Traxer (1)
 
(1) Urology Department, Tenon Hospital, APHP, Paris
 
(2) Urology Department, Hôpital Européen Georges Pompidou, APHP, Paris"
 
(3) PIMM lab, Arts et Métiers Paris Tech, Paris

Contact: Frédéric Panthier, fredericpanthier(at)gmail.com 

'''License:''' [https://github.com/Slicer/Slicer/blob/master/License.txt Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

{|
|[[File:calculator.png|thumb|left]]
|“KidneyStoneCalculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.
|}


{{documentation/{{documentation/version}}/module-section|Use Cases}}
N/A


{{documentation/{{documentation/version}}/module-section|Tutorials}}

Below, we describe the Instructions Guide to use KidneyStoneCalculator:

#Open 3DSlicer and download “KidneyStoneCalculator” using the “Extension Manager”
#Import DICOM data from a CT-scan (better with non-enhanced series)
#Open “Crop Volume” module
#*“Create a new annotation ROI” (Region Of Interest)
#*Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
#*Create a new volume (name will be: “name cropped”)
#*Click “Apply” button
#Open “KidneyStoneCalculator” module:
#*Select volume: “name cropped”
#*Choose threshold (houndfields units) minimum and maximun to fit to the stone
#*If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
#*Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
#*Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
#*Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)

{|
|[[File:Calculator-Screenshot.jpg|800px|thumb|left|Screenshot]]
|}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
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{{documentation/{{documentation/version}}/module-section|Similar Modules}}
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{{documentation/{{documentation/version}}/module-section|References}}
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{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/KidneyStoneCalculator

2019-11-14T16:26:22Z

Fpanthier:

<noinclude>{{documentation/versioncheck}}
</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

 
'''Authors:''' Frédéric Panthier (1 & 2), Lounès Illoul (3), Laurent Berthe (3), Steeve Doizi (1), Oliver Traxer (1)
 
(1) Urology Department, Tenon Hospital, APHP, Paris
 
(2) Urology Department, Hôpital Européen Georges Pompidou, APHP, Paris"
 
(3) PIMM lab, Arts et Métiers Paris Tech, Paris

Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email> 

'''License:''' [https://github.com/Slicer/Slicer/blob/master/License.txt Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

{|
|[[File:calculator.png|thumb|left]]
|“KidneyStoneCalculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.
|}


{{documentation/{{documentation/version}}/module-section|Use Cases}}
N/A


{{documentation/{{documentation/version}}/module-section|Tutorials}}

Below, we describe the Instructions Guide to use KidneyStoneCalculator:

#Open 3DSlicer and download “KidneyStoneCalculator” using the “Extension Manager”
#Import DICOM data from a CT-scan (better with non-enhanced series)
#Open “Crop Volume” module
#*“Create a new annotation ROI” (Region Of Interest)
#*Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
#*Create a new volume (name will be: “name cropped”)
#*Click “Apply” button
#Open “KidneyStoneCalculator” module:
#*Select volume: “name cropped”
#*Choose threshold (houndfields units) minimum and maximun to fit to the stone
#*If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
#*Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
#*Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
#*Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)

{|
|[[File:Calculator-Screenshot.jpg|800px|thumb|left|Screenshot]]
|}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
N/A



{{documentation/{{documentation/version}}/module-section|Similar Modules}}
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{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/KidneyStoneCalculator

2019-11-14T16:24:11Z

Fpanthier:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

 
'''Authors:''' Frédéric Panthier (1 & 2), Lounès Illoul (3), Laurent Berthe (3), Steeve Doizi (1), Oliver Traxer (1)
(1) Urology Department, Tenon Hospital, APHP, Paris
(2) Urology Department, Hôpital Européen Georges Pompidou, APHP, Paris)",\
(3) PIMM lab, Arts et Métiers Paris Tech, Paris*

Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email> 

'''License:''' [https://github.com/Slicer/Slicer/blob/master/License.txt Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

{|
|[[File:calculator.png|thumb|left]]
|“KidneyStoneCalculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.
|}


{{documentation/{{documentation/version}}/module-section|Use Cases}}
N/A


{{documentation/{{documentation/version}}/module-section|Tutorials}}

Below, we describe the Instructions Guide to use KidneyStoneCalculator:

# Open 3DSlicer and download “KidneyStoneCalculator” using the “Extension Manager”
# Import DICOM data from a CT-scan (better with non-enhanced series)
# Open “Crop Volume” module
#* “Create a new annotation ROI” (Region Of Interest)
#* Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
#* Create a new volume (name will be: “name cropped”)
#* Click “Apply” button
# Open “KidneyStoneCalculator” module:
#* Select volume: “name cropped”
#* Choose threshold (houndfields units) minimum and maximun to fit to the stone
#* If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
#* Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
#* Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
#* Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)

{|
|[[File:Calculator-Screenshot.jpg|800px|thumb|left|Screenshot]]
|}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
N/A



{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/4.10/Extensions/KidneyStoneCalculator

2019-11-14T10:01:06Z

Fpanthier: Redirected page to Documentation/Nightly/Modules/KidneyStoneCalculator

#REDIRECT [[Documentation/Nightly/Modules/KidneyStoneCalculator]]

Documentation/4.10/Modules/KidneyStoneCalculator

2019-11-14T10:00:01Z

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#REDIRECT [[Documentation/Nightly/Modules/KidneyStoneCalculator]]

Documentation/Nightly/Extensions/KidneyStoneCalculator

2019-11-14T09:57:10Z

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Documentation/Nightly/Extensions/KidneyStoneCalculator

2019-11-14T09:56:37Z

Fpanthier: Created page with "Documentation/Nightly/Modules/KidneyStoneCalculator"

[[Documentation/Nightly/Modules/KidneyStoneCalculator]]

Documentation/Nightly/Modules/KidneyStoneCalculator

2019-11-14T09:55:25Z

Fpanthier: Created page with "<noinclude>{{documentation/versioncheck}}</noinclude>  {{documentation/{{documentation/version}}/module-header}} <!-- --------------------..."

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

 
'''Authors:''' Frédéric Panthier, Lounès Illoul, Laurent Berthe, Steeve Doizi, Oliver Traxer

Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email> 

'''License:''' [https://github.com/Slicer/Slicer/blob/master/License.txt Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

{|
|[[File:calculator.png|thumb|left]]
|“KidneyStoneCalculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.
|}


{{documentation/{{documentation/version}}/module-section|Use Cases}}
N/A


{{documentation/{{documentation/version}}/module-section|Tutorials}}

Below, we describe the Instructions Guide to use KidneyStoneCalculator:

# Open 3DSlicer and download “KidneyStoneCalculator” using the “Extension Manager”
# Import DICOM data from a CT-scan (better with non-enhanced series)
# Open “Crop Volume” module
#* “Create a new annotation ROI” (Region Of Interest)
#* Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
#* Create a new volume (name will be: “name cropped”)
#* Click “Apply” button
# Open “KidneyStoneCalculator” module:
#* Select volume: “name cropped”
#* Choose threshold (houndfields units) minimum and maximun to fit to the stone
#* If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
#* Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
#* Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
#* Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)

{|
|[[File:Calculator-Screenshot.jpg|800px|thumb|left|Screenshot]]
|}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
N/A



{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/Calculator

2019-11-07T16:51:46Z

Fpanthier:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

 
'''Authors:''' Frédéric Panthier, Lounès Illoul, Laurent Berthe, Steeve Doizi, Oliver Traxer

Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email> 

'''License:''' [https://github.com/Slicer/Slicer/blob/master/License.txt Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

{|
|[[File:calculator.png|thumb|left]]
|“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.
|}


{{documentation/{{documentation/version}}/module-section|Use Cases}}
N/A


{{documentation/{{documentation/version}}/module-section|Tutorials}}

Below, we describe the Instructions Guide to use Calculator:

# Open 3DSlicer and download “Calculator” using the “Extension Manager”
# Import DICOM data from a CT-scan (better with non-enhanced series)
# Open “Crop Volume” module
#* “Create a new annotation ROI” (Region Of Interest)
#* Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
#* Create a new volume (name will be: “name cropped”)
#* Click “Apply” button
# Open “Calculator” module:
#* Select volume: “name cropped”
#* Choose threshold (houndfields units) minimum and maximun to fit to the stone
#* If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
#* Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
#* Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
#* Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)

{|
|[[File:Calculator-Screenshot.jpg|800px|thumb|left|Screenshot]]
|}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
N/A



{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/4.10/Extensions/Calculator

2019-11-07T14:19:18Z

Fpanthier: Redirected page to Documentation/Nightly/Modules/Calculator

#REDIRECT [[Documentation/Nightly/Modules/Calculator]]

Documentation/4.10/Modules/Calculator

2019-11-07T14:17:52Z

Fpanthier: Redirected page to Documentation/Nightly/Modules/Calculator

#REDIRECT [[Documentation/Nightly/Modules/Calculator]]

Documentation/Nightly/Modules/Calculator

2019-11-06T17:28:03Z

Fpanthier:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

 
'''Authors:''' Frédéric Panthier, Lounès Illoul, Laurent Berthe, Steeve Doizi, Oliver Traxer

Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email> 

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

{|
|[[File:calculator.png|thumb|left]]
|“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.
|}


{{documentation/{{documentation/version}}/module-section|Use Cases}}
N/A


{{documentation/{{documentation/version}}/module-section|Tutorials}}

Below, we describe the Instructions Guide to use Calculator:

# Open 3DSlicer and download “Calculator” using the “Extension Manager”
# Import DICOM data from a CT-scan (better with non-enhanced series)
# Open “Crop Volume” module
#* “Create a new annotation ROI” (Region Of Interest)
#* Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
#* Create a new volume (name will be: “name cropped”)
#* Click “Apply” button
# Open “Calculator” module:
#* Select volume: “name cropped”
#* Choose threshold (houndfields units) minimum and maximun to fit to the stone
#* If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
#* Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
#* Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
#* Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)

{|
|[[File:Calculator-Screenshot.jpg|800px|thumb|left|Screenshot]]
|}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
N/A



{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/Calculator

2019-11-06T17:24:27Z

Fpanthier:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

 
'''Authors:''' Frédéric Panthier, Lounès Illoul, Laurent Berthe, Steeve Doizi, Oliver Traxer

Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email> 

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}


“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.


{{documentation/{{documentation/version}}/module-section|Use Cases}}
N/A


{{documentation/{{documentation/version}}/module-section|Tutorials}}

Below, we describe the Instructions Guide to use Calculator:

# Open 3DSlicer and download “Calculator” using the “Extension Manager”
# Import DICOM data from a CT-scan (better with non-enhanced series)
# Open “Crop Volume” module
#* “Create a new annotation ROI” (Region Of Interest)
#* Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
#* Create a new volume (name will be: “name cropped”)
#* Click “Apply” button
# Open “Calculator” module:
#* Select volume: “name cropped”
#* Choose threshold (houndfields units) minimum and maximun to fit to the stone
#* If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
#* Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
#* Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
#* Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)

{|
|[[File:Calculator-Screenshot.jpg|800px|thumb|left|Screenshot]]
|}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
N/A



{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

File:Calculator.png

2019-11-06T17:19:40Z

Fpanthier: Calculator icon

Calculator icon

File:Calculator-Screenshot.jpg

2019-11-06T16:45:15Z

Fpanthier: Calculator screenshot

Calculator screenshot

Documentation/Nightly/Modules/Calculator

2019-11-06T16:37:56Z

Fpanthier:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

 
'''Authors:''' Frédéric Panthier, Lounès Illoul, Laurent Berthe, Steeve Doizi, Oliver Traxer

Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email> 

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|isomics}}|{{collaborator|longname|isomics}} <- Replace this logo with yours
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}} <-Replace this logo with yours
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}


“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.


{{documentation/{{documentation/version}}/module-section|Use Cases}}
N/A


{{documentation/{{documentation/version}}/module-section|Tutorials}}

Below, we describe the Instructions Guide to use Calculator:

# Open 3DSlicer and download “Calculator” using the “Extension Manager”
# Import DICOM data from a CT-scan (better with non-enhanced series)
# Open “Crop Volume” module
#* “Create a new annotation ROI” (Region Of Interest)
#* Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
#* Create a new volume (name will be: “name cropped”)
#* Click “Apply” button
# Open “Calculator” module:
#* Select volume: “name cropped”
#* Choose threshold (houndfields units) minimum and maximun to fit to the stone
#* If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
#* Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
#* Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
#* Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
N/A



{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/Calculator

2019-11-06T16:28:48Z

Fpanthier:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

 
Author: Frédéric Panthier, AFFILIATION 
Contributor1: Laurent Berthe, AFFILIATION 
Contributor2: Steeve Doizi, AFFILIATION 
Contributor3: Oliver Traxer, AFFILIATION 
Contributor4: Lounès Illoul, AFFILIATION 

Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email> 

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|isomics}}|{{collaborator|longname|isomics}} <- Replace this logo with yours
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}} <-Replace this logo with yours
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}


“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.


{{documentation/{{documentation/version}}/module-section|Use Cases}}
N/A


{{documentation/{{documentation/version}}/module-section|Tutorials}}

Below, we describe the Instructions Guide to use Calculator:

# Open 3DSlicer and download “Calculator” using the “Extension Manager”
# Import DICOM data from a CT-scan (better with non-enhanced series)
# Open “Crop Volume” module
#* “Create a new annotation ROI” (Region Of Interest)
#* Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
#* Create a new volume (name will be: “name cropped”)
#* Click “Apply” button
# Open “Calculator” module:
#* Select volume: “name cropped”
#* Choose threshold (houndfields units) minimum and maximun to fit to the stone
#* If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
#* Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
#* Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
#* Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)


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{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/Calculator

2019-11-06T16:05:14Z

Fpanthier:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

 
Author: Frédéric Panthier, AFFILIATION 
Contributor1: Laurent Berthe, AFFILIATION 
Contributor2: Steeve Doizi, AFFILIATION 
Contributor3: Oliver Traxer, AFFILIATION 
Contributor4: Lounès Illoul, AFFILIATION 

Contact: Frédéric Panthier, <email>fredericpanthier@gmail.com</email> 

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|isomics}}|{{collaborator|longname|isomics}} <- Replace this logo with yours
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}} <-Replace this logo with yours
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}


“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.


{{documentation/{{documentation/version}}/module-section|Use Cases}}
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{{documentation/{{documentation/version}}/module-section|Tutorials}}
<nowiki>

Below, we describe the Instructions Guide to use Calculator:

1. Open 3DSlicer and download “Calculator” using the “Extension Manager”
2. Import DICOM data from a CT-scan (better with non-enhanced series)
3. Open “Crop Volume” module
- a. “Create a new annotation ROI” (Region Of Interest)
- b. Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
- c. Create a new volume (name will be: “name cropped”)
- d. Click “Apply” button
4. Open “Calculator” module:
- a. Select volume: “name cropped”
- b. Choose threshold (houndfields units) minimum and maximun to fit to the stone
- c. If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
- d. Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
- e. Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
- f. Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)

</nowiki>


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{{documentation/{{documentation/version}}/module-section|Similar Modules}}
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{{documentation/{{documentation/version}}/module-section|References}}
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{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/Calculator

2019-11-06T15:56:01Z

Fpanthier:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

 
Author: FIRSTNAME LASTNAME, AFFILIATION 
Contributor1: FIRSTNAME LASTNAME, AFFILIATION 
Contributor2: FIRSTNAME LASTNAME, AFFILIATION 
Contact: FIRSTNAME LASTNAME, <email>john@doe.org</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|isomics}}|{{collaborator|longname|isomics}} <- Replace this logo with yours
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}} <-Replace this logo with yours
}}
{{documentation/{{documentation/version}}/module-introduction-end}}

“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.


{{documentation/{{documentation/version}}/module-section|Module Description}}


Below, we describe the Instructions Guide to use Calculator:

# Open 3DSlicer and download “Calculator” using the “Extension Manager”
# Import DICOM data from a CT-scan (better with non-enhanced series)
# Open “Crop Volume” module
* “Create a new annotation ROI” (Region Of Interest)
* Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
* Create a new volume (name will be: “name cropped”)
* Click “Apply” button
# Open “Calculator” module:
* Select volume: “name cropped”
* Choose threshold (houndfields units) minimum and maximun to fit to the stone
* If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
* Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
* Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
* Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)


{{documentation/{{documentation/version}}/module-section|Use Cases}}
N/A


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
N/A



{{documentation/{{documentation/version}}/module-section|Similar Modules}}
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{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/Calculator

2019-11-06T15:47:54Z

Fpanthier:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}

 
Author: FIRSTNAME LASTNAME, AFFILIATION 
Contributor1: FIRSTNAME LASTNAME, AFFILIATION 
Contributor2: FIRSTNAME LASTNAME, AFFILIATION 
Contact: FIRSTNAME LASTNAME, <email>john@doe.org</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|isomics}}|{{collaborator|longname|isomics}} <- Replace this logo with yours
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}} <-Replace this logo with yours
}}
{{documentation/{{documentation/version}}/module-introduction-end}}

“Calculator” consists in a volumetric evaluation of kidney stones and also provides information on surgical duration. Moreover, it provides the estimated time of lithotripsy and consequently the operative time. It provides in a few seconds a 3D view of the stone(s) and axial, coronal and sagittal views with CT-scan DICOMs.


{{documentation/{{documentation/version}}/module-section|Module Description}}
N/A


Below, we describe the Instructions Guide to use Calculator:

1. Open 3DSlicer and download “Calculator” using the “Extension Manager”
2. Import DICOM data from a CT-scan (better with non-enhanced series)
3. Open “Crop Volume” module
- a. “Create a new annotation ROI” (Region Of Interest)
- b. Size the ROI in x, y and z axes using axial (red), sagittal (yellow) and coronal (green) view in four-up disposition.
- c. Create a new volume (name will be: “name cropped”)
- d. Click “Apply” button
4. Open “Calculator” module:
- a. Select volume: “name cropped”
- b. Choose threshold (houndfields units) minimum and maximun to fit to the stone
- c. If there are multiples stones select “split islands into segments” with a recommended “minimum size” of 40 voxels
- d. Select a mode of treatment (laser source, core-diameter of laser fiber, laser settings and stone type)
- e. Select “show 3D” if you want to visualize in 3D-view the segmented stone(s)
- f. Click “Apply” button. A table will appear to show the segment’s name, volume (mm3) and time of lithotripsy (min)


{{documentation/{{documentation/version}}/module-section|Use Cases}}
N/A


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
N/A



{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/Calculator

2019-11-06T15:11:23Z

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website]. 
Author: FIRSTNAME LASTNAME, AFFILIATION 
Contributor1: FIRSTNAME LASTNAME, AFFILIATION 
Contributor2: FIRSTNAME LASTNAME, AFFILIATION 
Contact: FIRSTNAME LASTNAME, <email>john@doe.org</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|isomics}}|{{collaborator|longname|isomics}} <- Replace this logo with yours
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}} <-Replace this logo with yours
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
N/A



{{documentation/{{documentation/version}}/module-section|Use Cases}}
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{{documentation/{{documentation/version}}/module-section|Tutorials}}
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{{documentation/{{documentation/version}}/module-section|Panels and their use}}
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{{documentation/{{documentation/version}}/module-section|Similar Modules}}
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{{documentation/{{documentation/version}}/module-section|References}}
N/A


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Extensions/Calculator

2019-11-06T15:08:07Z

Fpanthier: Redirected page to Documentation/Nightly/Modules/Calculator

#REDIRECT [[Documentation/Nightly/Modules/Calculator]]