Slicer Wiki - User contributions [en]

Documentation/4.6/Extensions/SliceTracker

2017-08-02T15:47:22Z

Criskross: uploaded new SliceTracker logo including NCIGT logo

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{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
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{|
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[[Image:SliceTracker_Logo_1.1_128x128.png]]
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Extension: [[Documentation/{{documentation/version}}/Extensions/SliceTracker|SliceTracker]] 
Acknowledgments:
This work is supported in part by the National Cancer Institute and the National Institute of Biomedical Imaging and Bioengineering of the National Institutes of Health through the following grants:
* [http://igtpg.spl.harvard.edu/ Enabling technologies for MRI-guided prostate interventions] (R01 CA111288, PI Tempany)
* [http://ncigt.org/ The National Center for Image-Guided Therapy] (P41 EB015898, PI Tempany)
* [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] (U24 CA180918, PIs Kikinis and Fedorov). 
Contributors: Christian Herz ({{collaborator|name|spl}}), Peter Behringer ({{collaborator|name|spl}}), Andrey Fedorov ({{collaborator|name|spl}}) 
Contact: Andrey Fedorov, <email>andrey.fedorov@gmail.com</email> 

License: [http://www.slicer.org/pages/LicenseText Slicer License]
|}

== ''NOTE: SliceTracker documentation is located here: https://fedorov.gitbooks.io/slicetracker/content/'' ==

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{{documentation/{{documentation/version}}/extension-section|Extension Description}}

Slicetracker is a 3D Slicer extension for tracking prostate motion during MR-guided prostate biopsies. It implements registration of the pre-procedural to intra-procedural images, which aims to improve reliability of biopsy target re-identification.

Furthermore, a so called z-Frame registration module is included for correlating the patient and 3D Slicers coordinate system. For guidance of the needle a template grid with 15x14 holes is placed in front of the z-Frame. The optimal hole is computed for inserting the needle and obtaining the tissue sample.

[[File:Slicetracker.gif]]

{{documentation/{{documentation/version}}/extension-section|References}}
[1] Fedorov A., Tuncali K., Fennessy FM., Tokuda J., Hata N., Wells WM., Kikinis R., Tempany CM. 2012. Image registration for targeted MRI-guided transperineal prostate biopsy. Journal of magnetic resonance imaging: JMRI 36:987–992. DOI: 10.1002/jmri.23688.

[2] Fedorov A., Tuncali K., Penzkofer T., Tokuda J., Song S-E., Hata N., Tempany C. 2013. Quantification of intra-procedural gland motion during transperineal MRI-guided prostate biopsy. In: Proc. of ISMRM’13.

[3] Tokuda J., Tuncali K., Iordachita I., Song S-EE., Fedorov A., Oguro S., Lasso A., Fennessy FM., Tempany CM., Hata N. 2012. In-bore setup and software for 3T MRI-guided transperineal prostate biopsy. Physics in medicine and biology 57:5823–5840. DOI: 10.1088/0031-9155/57/18/5823.

[4] Behringer P., Herz C., Penzkofer T., Tuncali K., Tempany C., Fedorov A. 2015. Open-source Platform for Prostate Motion Tracking during in-bore Targeted MRI-guided Biopsy. In: MICCAI Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging. DOI: 10.1007/978-3-319-31808-0_15.

[5] https://blog.kitware.com/clinical-research-employs-3d-slicer-extension/


{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
* Source code on github: https://github.com/SlicerProstate/SliceTracker


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Informatics]]

File:SliceTracker Logo 1.1 128x128.png

2017-08-02T15:46:30Z

Criskross:

File:SliceTracker Logo 1.0 128x128.png

2017-08-02T15:41:39Z

Criskross: Criskross uploaded a new version of File:SliceTracker Logo 1.0 128x128.png

File:SliceTracker Logo 1.0 128x128.png

2017-08-02T15:32:19Z

Criskross: Criskross uploaded a new version of File:SliceTracker Logo 1.0 128x128.png

File:SliceTracker Logo 1.0 128x128.png

2017-08-02T15:31:58Z

Criskross: Criskross uploaded a new version of File:SliceTracker Logo 1.0 128x128.png

File:SliceTracker Logo 1.0 128x128.png

2017-08-02T15:27:26Z

Criskross: Criskross uploaded a new version of File:SliceTracker Logo 1.0 128x128.png

Documentation/Nightly/Extensions/SlicerDevelopmentToolbox

2017-04-19T20:28:49Z

Criskross:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
{|
|
[[File:SlicerDevelopmentToolbox.png|200px|left]]
|
Extension: [[Documentation/{{documentation/version}}/Extensions/SlicerDevelopmentToolbox/SlicerDevelopmentToolbox|SlicerDevelopmentToolbox]] 
Acknowledgments:
This work is supported in part by the National Cancer Institute and the National Institute of Biomedical Imaging and Bioengineering of the National Institutes of Health through the following grants:
* Quantitative MRI of prostate cancer as a biomarker and guide for treatment, Quantitative Imaging Network (U01 CA151261, PI Fennessy)
* [http://igtpg.spl.harvard.edu/ Enabling technologies for MRI-guided prostate interventions] (R01 CA111288, PI Tempany)
* [http://ncigt.org/ The National Center for Image-Guided Therapy] (P41 EB015898, PI Tempany)
* Advancement and Validation of Prostate Diffusion and Spectroscopic MRI (R01 CA160902, PI Maier)
* [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] (U24 CA180918, PIs Kikinis and Fedorov). 
Contributors: Christian Herz ({{collaborator|name|spl}}), Andrey Fedorov ({{collaborator|name|spl}}) 
Contact: Christian Herz, <email>cherz@bwh.harvard.edu</email>, Andrey Fedorov, <email>fedorov@bwh.harvard.edu</email> 

License: [http://www.slicer.org/pages/LicenseText Slicer License]
|}

{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|qiicr}}|{{collaborator|longname|qiicr}}
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}}
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{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/extension-section|Extension Description}}

SlicerDevelopmentToolbox extension is a collection of python classes that facilitate the development process of patterns that continuously occur:
* widgets
* mixins
* helpers
* decorators
* predefined events
* constants


{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
* SlicerDevelopmentToolbox organization page on github: https://github.com/QIICR/SlicerDevelopmentToolbox


{{documentation/{{documentation/version}}/module-section|Examples}}
TODO: add more screenshots and description

<gallery class=center showfilename=yes widths="600px">
File:IncomingDataWindow.png|Starts a storeSCP process (DCMTK) and invokes an event on finishing transfer. Furthermore you can import from a directory
File:ModuleSettingsWidget.png|Settings for your module with name {moduleName} saved in qt.QSettings() in the following way {moduleName}/{settingName} can be displayed/modified in a separate window/messagebox
File:RatingWindow.png|You want to rate some results and save those in your data? Then this class is the right thing for you. While creating an instance you can specify a maximum rating value and listen to the event ''RatingWindowClosedEvent''
File:TargetCreationWidget.png|This widget can be included anywhere. It can be used for creation/keeping track of targets and changing their name
File:Watchbox.png|The watchbox can be used for displaying any kind of textual information to the user. There are two different versions of the watchbox. XMLBasedInformationWatchBox and DICOMBasedInformationWatchBox.
</gallery>


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Informatics]]

Documentation/Nightly/Extensions/SlicerDevelopmentToolbox

2017-04-19T20:26:26Z

Criskross:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
{|
|
[[File:SlicerDevelopmentToolbox.png|200px|left]]
|
Extension: [[Documentation/{{documentation/version}}/Extensions/SlicerDevelopmentToolbox/SlicerDevelopmentToolbox|SlicerDevelopmentToolbox]] 
Acknowledgments:
This work is supported in part by the National Cancer Institute and the National Institute of Biomedical Imaging and Bioengineering of the National Institutes of Health through the following grants:
* Quantitative MRI of prostate cancer as a biomarker and guide for treatment, Quantitative Imaging Network (U01 CA151261, PI Fennessy)
* [http://igtpg.spl.harvard.edu/ Enabling technologies for MRI-guided prostate interventions] (R01 CA111288, PI Tempany)
* [http://ncigt.org/ The National Center for Image-Guided Therapy] (P41 EB015898, PI Tempany)
* Advancement and Validation of Prostate Diffusion and Spectroscopic MRI (R01 CA160902, PI Maier)
* [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] (U24 CA180918, PIs Kikinis and Fedorov). 
Contributors: Christian Herz ({{collaborator|name|spl}}), Andrey Fedorov ({{collaborator|name|spl}}) 
Contact: Christian Herz, <email>cherz@bwh.harvard.edu</email>, Andrey Fedorov, <email>fedorov@bwh.harvard.edu</email> 

License: [http://www.slicer.org/pages/LicenseText Slicer License]
|}

{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|qiicr}}|{{collaborator|longname|qiicr}}
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}}
|{{collaborator|logo|ncigt}}|{{collaborator|longname|ncigt}}
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/extension-section|Extension Description}}

SlicerDevelopmentToolbox extension is a collection of python classes that facilitate the development process of patterns that continuously occur:
* widgets
* mixins
* helpers
* decorators
* predefined events
* constants


{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
* SlicerDevelopmentToolbox organization page on github: https://github.com/QIICR/SlicerDevelopmentToolbox


{{documentation/{{documentation/version}}/module-section|Examples}}
TODO: add more screenshots and description

<gallery class=center showfilename=yes widths="180px">
File:IncomingDataWindow.png|Starts a storeSCP process (DCMTK) and invokes an event on finishing transfer. Furthermore you can import from a directory
File:ModuleSettingsWidget.png|Settings for your module with name {moduleName} saved in qt.QSettings() in the following way {moduleName}/{settingName} can be displayed/modified in a separate window/messagebox
File:RatingWindow.png|You want to rate some results and save those in your data? Then this class is the right thing for you. While creating an instance you can specify a maximum rating value and listen to the event ''RatingWindowClosedEvent''
File:TargetCreationWidget.png|This widget can be included anywhere. It can be used for creation/keeping track of targets and changing their name
File:Watchbox.png|The watchbox can be used for displaying any kind of textual information to the user. There are two different versions of the watchbox. XMLBasedInformationWatchBox and DICOMBasedInformationWatchBox.
</gallery>


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Informatics]]

File:TargetCreationWidget.png

2017-04-19T20:23:06Z

Criskross: Criskross uploaded a new version of File:TargetCreationWidget.png

File:Watchbox.png

2017-04-19T19:30:11Z

Criskross: Criskross moved page File:SlicerDeveloplentToolbox watchbox.png to File:Watchbox.png

File:SlicerDeveloplentToolbox watchbox.png

2017-04-19T19:30:11Z

Criskross: Criskross moved page File:SlicerDeveloplentToolbox watchbox.png to File:Watchbox.png

#REDIRECT [[File:Watchbox.png]]

File:TargetCreationWidget.png

2017-04-19T19:29:35Z

Criskross: Criskross moved page File:SlicerDeveloplentToolbox TargetCreationWidget.png to File:TargetCreationWidget.png

File:SlicerDeveloplentToolbox TargetCreationWidget.png

2017-04-19T19:29:35Z

Criskross: Criskross moved page File:SlicerDeveloplentToolbox TargetCreationWidget.png to File:TargetCreationWidget.png

#REDIRECT [[File:TargetCreationWidget.png]]

File:RatingWindow.png

2017-04-19T19:29:07Z

Criskross: Criskross moved page File:SlicerDeveloplentToolbox RatingWindow.png to File:RatingWindow.png

File:SlicerDeveloplentToolbox RatingWindow.png

2017-04-19T19:29:07Z

Criskross: Criskross moved page File:SlicerDeveloplentToolbox RatingWindow.png to File:RatingWindow.png

#REDIRECT [[File:RatingWindow.png]]

File:IncomingDataWindow.png

2017-04-19T19:28:28Z

Criskross: Criskross moved page File:SlicerDeveloplentToolbox IncomingDataWindow.png to File:IncomingDataWindow.png

File:SlicerDeveloplentToolbox IncomingDataWindow.png

2017-04-19T19:28:28Z

Criskross: Criskross moved page File:SlicerDeveloplentToolbox IncomingDataWindow.png to File:IncomingDataWindow.png

#REDIRECT [[File:IncomingDataWindow.png]]

Documentation/Nightly/Extensions/SlicerDevelopmentToolbox

2017-04-19T19:25:46Z

Criskross:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
{|
|
[[File:SlicerDevelopmentToolbox.png|200px|left]]
|
Extension: [[Documentation/{{documentation/version}}/Extensions/SlicerDevelopmentToolbox/SlicerDevelopmentToolbox|SlicerDevelopmentToolbox]] 
Acknowledgments:
This work is supported in part by the National Cancer Institute and the National Institute of Biomedical Imaging and Bioengineering of the National Institutes of Health through the following grants:
* Quantitative MRI of prostate cancer as a biomarker and guide for treatment, Quantitative Imaging Network (U01 CA151261, PI Fennessy)
* [http://igtpg.spl.harvard.edu/ Enabling technologies for MRI-guided prostate interventions] (R01 CA111288, PI Tempany)
* [http://ncigt.org/ The National Center for Image-Guided Therapy] (P41 EB015898, PI Tempany)
* Advancement and Validation of Prostate Diffusion and Spectroscopic MRI (R01 CA160902, PI Maier)
* [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] (U24 CA180918, PIs Kikinis and Fedorov). 
Contributors: Christian Herz ({{collaborator|name|spl}}), Andrey Fedorov ({{collaborator|name|spl}}) 
Contact: Christian Herz, <email>cherz@bwh.harvard.edu</email>, Andrey Fedorov, <email>fedorov@bwh.harvard.edu</email> 

License: [http://www.slicer.org/pages/LicenseText Slicer License]
|}

{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|qiicr}}|{{collaborator|longname|qiicr}}
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}}
|{{collaborator|logo|ncigt}}|{{collaborator|longname|ncigt}}
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/extension-section|Extension Description}}

SlicerDevelopmentToolbox extension is a collection of python classes that facilitate the development process of patterns that continuously occur:
* widgets
* mixins
* helpers
* decorators
* predefined events
* constants


{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
* SlicerDevelopmentToolbox organization page on github: https://github.com/QIICR/SlicerDevelopmentToolbox


{{documentation/{{documentation/version}}/module-section|Examples}}
TODO: add more screenshots and description

[[File:IncomingDataWindow.png|400px|left]]
[[File:ModuleSettingsWidget.png|left]]
[[File:RatingWindow.png|400px|left]]
[[File:TargetCreationWidget.png|400px|left]]
[[File:Watchbox.png|400px|left]]


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Informatics]]

Documentation/Nightly/Extensions/SlicerDevelopmentToolbox

2017-04-19T19:25:14Z

Criskross:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
{|
|
[[File:SlicerDevelopmentToolbox.png|200px|left]]
|
Extension: [[Documentation/{{documentation/version}}/Extensions/SlicerDevelopmentToolbox/SlicerDevelopmentToolbox|SlicerDevelopmentToolbox]] 
Acknowledgments:
This work is supported in part by the National Cancer Institute and the National Institute of Biomedical Imaging and Bioengineering of the National Institutes of Health through the following grants:
* Quantitative MRI of prostate cancer as a biomarker and guide for treatment, Quantitative Imaging Network (U01 CA151261, PI Fennessy)
* [http://igtpg.spl.harvard.edu/ Enabling technologies for MRI-guided prostate interventions] (R01 CA111288, PI Tempany)
* [http://ncigt.org/ The National Center for Image-Guided Therapy] (P41 EB015898, PI Tempany)
* Advancement and Validation of Prostate Diffusion and Spectroscopic MRI (R01 CA160902, PI Maier)
* [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] (U24 CA180918, PIs Kikinis and Fedorov). 
Contributors: Christian Herz ({{collaborator|name|spl}}), Andrey Fedorov ({{collaborator|name|spl}}) 
Contact: Christian Herz, <email>cherz@bwh.harvard.edu</email>, Andrey Fedorov, <email>fedorov@bwh.harvard.edu</email> 

License: [http://www.slicer.org/pages/LicenseText Slicer License]
|}

{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|qiicr}}|{{collaborator|longname|qiicr}}
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}}
|{{collaborator|logo|ncigt}}|{{collaborator|longname|ncigt}}
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/extension-section|Extension Description}}

SlicerDevelopmentToolbox extension is a collection of python classes that facilitate the development process of patterns that continuously occur:
* widgets
* mixins
* helpers
* decorators
* predefined events
* constants


{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
* SlicerDevelopmentToolbox organization page on github: https://github.com/QIICR/SlicerDevelopmentToolbox


{{documentation/{{documentation/version}}/module-section|Examples}}
TODO: add more screenshots and description

[[File:SlicerDeveloplentToolbox_IncomingDataWindow.png|400px|left]]
[[File:ModuleSettingsWidget.png|left]]
[[File:RatingWindow.png|400px|left]]
[[File:TargetCreationWidget.png|400px|left]]
[[File:Watchbox.png|400px|left]]


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Informatics]]

File:ModuleSettingsWidget.png

2017-04-19T19:23:44Z

Criskross: Criskross moved page File:SlicerDeveloplentToolbox ModuleSettingsWidget.png to File:ModuleSettingsWidget.png

File:SlicerDeveloplentToolbox ModuleSettingsWidget.png

2017-04-19T19:23:44Z

Criskross: Criskross moved page File:SlicerDeveloplentToolbox ModuleSettingsWidget.png to File:ModuleSettingsWidget.png

#REDIRECT [[File:ModuleSettingsWidget.png]]

Documentation/Nightly/Extensions/SlicerDevelopmentToolbox

2017-04-18T22:30:42Z

Criskross:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
{|
|
[[File:SlicerDevelopmentToolbox.png|200px|left]]
|
Extension: [[Documentation/{{documentation/version}}/Extensions/SlicerDevelopmentToolbox/SlicerDevelopmentToolbox|SlicerDevelopmentToolbox]] 
Acknowledgments:
This work is supported in part by the National Cancer Institute and the National Institute of Biomedical Imaging and Bioengineering of the National Institutes of Health through the following grants:
* Quantitative MRI of prostate cancer as a biomarker and guide for treatment, Quantitative Imaging Network (U01 CA151261, PI Fennessy)
* [http://igtpg.spl.harvard.edu/ Enabling technologies for MRI-guided prostate interventions] (R01 CA111288, PI Tempany)
* [http://ncigt.org/ The National Center for Image-Guided Therapy] (P41 EB015898, PI Tempany)
* Advancement and Validation of Prostate Diffusion and Spectroscopic MRI (R01 CA160902, PI Maier)
* [http://qiicr.org Quantitative Image Informatics for Cancer Research (QIICR)] (U24 CA180918, PIs Kikinis and Fedorov). 
Contributors: Christian Herz ({{collaborator|name|spl}}), Andrey Fedorov ({{collaborator|name|spl}}) 
Contact: Christian Herz, <email>cherz@bwh.harvard.edu</email>, Andrey Fedorov, <email>fedorov@bwh.harvard.edu</email> 

License: [http://www.slicer.org/pages/LicenseText Slicer License]
|}

{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|qiicr}}|{{collaborator|longname|qiicr}}
|{{collaborator|logo|spl}}|{{collaborator|longname|spl}}
|{{collaborator|logo|ncigt}}|{{collaborator|longname|ncigt}}
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/extension-section|Extension Description}}

SlicerDevelopmentToolbox extension is a collection of python classes that facilitate the development process of patterns that continuously occur:
* widgets
* mixins
* helpers
* decorators
* predefined events
* constants


{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
* SlicerDevelopmentToolbox organization page on github: https://github.com/QIICR/SlicerDevelopmentToolbox


{{documentation/{{documentation/version}}/module-section|Examples}}
TODO: add more screenshots and description

[[File:SlicerDeveloplentToolbox_IncomingDataWindow.png|400px|left]]
[[File:SlicerDeveloplentToolbox_ModuleSettingsWidget.png|left]]
[[File:SlicerDeveloplentToolbox_RatingWindow.png|400px|left]]
[[File:SlicerDeveloplentToolbox_TargetCreationWidget.png|400px|left]]
[[File:SlicerDeveloplentToolbox_watchbox.png|400px|left]]


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Informatics]]

File:Watchbox.png

2017-04-18T22:23:47Z

Criskross:

File:TargetCreationWidget.png

2017-04-18T22:23:23Z

Criskross:

File:RatingWindow.png

2017-04-18T22:23:01Z

Criskross:

File:ModuleSettingsWidget.png

2017-04-18T22:22:42Z

Criskross:

File:IncomingDataWindow.png

2017-04-18T22:21:34Z

Criskross:

Documentation/Nightly/Extensions/SlicerDevelopmentToolbox

2017-04-18T15:03:47Z

Criskross: Created page with "<noinclude>{{documentation/versioncheck}}</noinclude>  {{documentation/{{documentation/version}}/module-header}} <!-- --------------------..."

File:SlicerDevelopmentToolbox.png

2017-04-18T14:42:16Z

Criskross: Criskross uploaded a new version of File:SlicerDevelopmentToolbox.png

The tool icon is published under GPL.

File:SlicerDevelopmentToolbox.png

2017-04-18T14:40:37Z

Criskross: Criskross uploaded a new version of File:SlicerDevelopmentToolbox.png

The tool icon is published under GPL.

File:SlicerDevelopmentToolbox.png

2017-04-18T14:39:33Z

Criskross: The tool icon is published under GPL.

The tool icon is published under GPL.

Documentation/Nightly/ModuleExtensionListing/Extensions by category

2017-04-18T14:37:06Z

Criskross: Added extension page SlicerDevelopmentToolbox

__NOTOC__
* [[#Extensions_by_category|Extensions by category]]
= Extensions by category =
25 categories:
* [[#Extensions_by_category_Astronomy|Astronomy]]
* [[#Extensions_by_category_Cardiac|Cardiac]]
* [[#Extensions_by_category_Cardiac_MRI_toolkit|Cardiac MRI toolkit]]
* [[#Extensions_by_category_Chest_Imaging_Platform|Chest Imaging Platform]]
* [[#Extensions_by_category_Converters|Converters]]
* [[#Extensions_by_category_Developer_Tools|Developer Tools]]
* [[#Extensions_by_category_Diffusion|Diffusion]]
* [[#Extensions_by_category_Editor_Effects|Editor Effects]]
* [[#Extensions_by_category_Examples|Examples]]
* [[#Extensions_by_category_Exporter|Exporter]]
* [[#Extensions_by_category_Filtering|Filtering]]
* [[#Extensions_by_category_IGT|IGT]]
* [[#Extensions_by_category_Informatics|Informatics]]
* [[#Extensions_by_category_Libraries|Libraries]]
* [[#Extensions_by_category_Mesh_Generation|Mesh Generation]]
* [[#Extensions_by_category_Microscopy|Microscopy]]
* [[#Extensions_by_category_Nuclear_Medicine|Nuclear Medicine]]
* [[#Extensions_by_category_Quantification|Quantification]]
* [[#Extensions_by_category_Radiotherapy|Radiotherapy]]
* [[#Extensions_by_category_Registration|Registration]]
* [[#Extensions_by_category_Scoliosis|Scoliosis]]
* [[#Extensions_by_category_Segmentation|Segmentation]]
* [[#Extensions_by_category_Sequences|Sequences]]
* [[#Extensions_by_category_Shape_Analysis|Shape Analysis]]
* [[#Extensions_by_category_Tractography|Tractography]]
* [[#Extensions_by_category_Training|Training]]
* [[#Extensions_by_category_Ultrasound|Ultrasound]]
* [[#Extensions_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
* [[#Extensions_by_category_Wizards|Wizards]]

== Astronomy ==
* [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] [https://github.com/Punzo/SlicerAstro/wiki]

== Cardiac ==
* [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]]
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]

== Cardiac MRI toolkit ==
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]

== Chest Imaging Platform ==
* [http://www.chestimagingplatform.org Chest Imaging Platform]

== Converters ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]

== Developer Tools ==
* [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]]
* [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]]
* [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]]
* [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]]

== Diffusion ==
* [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|Resample DTIlog Euclidean]]

== Editor Effects ==
* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]

== Examples ==
* [[Documentation/Nightly/Extensions/OpenCVExample|OpenCV Example]]

== Exporter ==
* [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]

== Filtering ==
* [[Documentation/Nightly/Extensions/pyLARSlicerExtension|pyLAR Slicer Extension]]

== IGT ==
* [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer]
* [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]]
* [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]]
* [https://github.com/SlicerIGT/LumpNav Lump Nav]
* [[Documentation/Nightly/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
* [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]]
* [[Documentation/Nightly/Extensions/iGyne|i Gyne]]
* [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]]

== Informatics ==
* [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
* [[Documentation/Nightly/Extensions/Reporting|Reporting]]
* [[Documentation/Nightly/Extensions/mpReview|mp Review]]
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]
* [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]]
* [[Documentation/Nightly/Extensions/SlicerDevelopmentToolbox|SlicerDevelopmentToolbox]]


== Libraries ==
* [[Documentation/Nightly/Extensions/SlicerOpenCV|SlicerOpenCV]]

== Mesh Generation ==
* [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]]
* [[Documentation/Nightly/Extensions/Add3DTextExtension|Add3DText Extension]]
* [[Documentation/Nightly/Extensions/PorousScaffoldsExtension|Porous Scaffolds Extension]]

== Microscopy ==
* [[Documentation/Nightly/Extensions/IASEM|IASEM]]

== Nuclear Medicine ==
* [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis]

== Quantification ==
* [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis]
* [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]]
* [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]]
* [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]]
* [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]]

== Radiotherapy ==
* [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]]
* [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]

== Registration ==
* [[Documentation/Nightly/Extensions/CMFreg|CMFreg]]
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]
* [[Documentation/Nightly/Extensions/Multi-LevelRegistration|Multi-LevelRegistration]]
* [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]]


== Scoliosis ==
* [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]]

== Segmentation ==
* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html Graph Cut Segment]
* [http://www.nitrc.org/projects/abc ABC]
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
* [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]]
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]
* [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
* [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]]
* [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]]
* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]
* [https://github.com/Tomnl/Slicer-Wasp Wasp]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation]
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]]

== Sequences ==
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]

== Shape Analysis ==
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]
* [[Documentation/Nightly/Extensions/Q3DC|Q3DC]]
* [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]]
* [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension]
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AnglePlanes Angle Planes Extension]
* [[Documentation/Nightly/Extensions/DatabaseInteractor|Database Interactor]]

== Tractography ==
* [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]]
* [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]]

== Training ==
* [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]]

== Ultrasound ==
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound]


== Vascular Modeling Toolkit ==
* [http://slicer.vmtk.org/ VMTK]

== Wizards ==
* [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]]
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