Slicer Wiki - User contributions [en]

Documentation/Nightly/Extensions/SurfaceReconstruction

2014-05-07T18:16:28Z

Chenchen78:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Extension: [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] 
Acknowledgments:
This work is based on an implementation of the Poisson surface reconstruction algorithm in the VTK framework, David-Doria Arnaud-Gelas, Rensselaer Polytechnic Institute & Harvard Medical School 

Author: Chenxi-Zhang (SPL & FDU) 
Contributor1: David-Doria Arnaud-Gelas (Rensselaer Polytechnic Institute & Harvard Medical School) 
Contributor2: Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe (Johns Hopkins University) 
Contributor3: Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
Contact: Chenxi-Zhang, <email>chenxizhang@fudan.edu.cn</email> 

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
A SurfaceReconstruction model produces a surface from a segmented contour. The input is a mask and the output is a surface.


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
|[[Image:InputMask.png|thumb|340px|Input Mask Image]]
|[[Image:OutputSurface.png|thumb|250px|Output Surface]]
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

{|
|
|[[Image:ModuleUI.png|thumb|280px|Module UI]]
|}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}
* David Doria and Arnaud Gelas "Poisson Surface Reconstruction for VTK", http://www.vtkjournal.org/browse/publication/718
* Michael Kazhdan, Matthew Bolitho and Hugues Hoppe "Poisson surface reconstruction", Eurographics Symposium on Geometry Processing, 2006.


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

File:SurfaceReconstruction.png

2014-05-07T17:56:40Z

Chenchen78:

Documentation/Nightly/Extensions/SurfaceReconstruction

2014-05-07T17:03:46Z

Chenchen78:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Extension: [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] 
Acknowledgments:
This work is based on an implementation of the Poisson surface reconstruction algorithm in the VTK framework, David-Doria Arnaud-Gelas, Rensselaer Polytechnic Institute & Harvard Medical School 

Author: Chenxi-Zhang (SPL & FDU) 
Contributor1: David-Doria Arnaud-Gelas (Rensselaer Polytechnic Institute & Harvard Medical School) 
Contributor2: Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe (Johns Hopkins University) 
Contributor3: Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
Contact: Chenxi-Zhang, <email>chenxizhang@fudan.edu.cn</email> 

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
A SurfaceReconstruction model produces a surface from a segmented contour. The input is a mask and the output is a surface


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
|[[Image:InputMask.png|thumb|340px|Input Mask Image]]
|[[Image:OutputSurface.png|thumb|250px|Output Surface]]
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

{|
|
|[[Image:ModuleUI.png|thumb|280px|Module UI]]
|}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}
* David Doria and Arnaud Gelas "Poisson Surface Reconstruction for VTK", http://www.vtkjournal.org/browse/publication/718
* Michael Kazhdan, Matthew Bolitho and Hugues Hoppe "Poisson surface reconstruction", Eurographics Symposium on Geometry Processing, 2006.


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

Documentation/Nightly/Extensions/SurfaceReconstruction

2014-05-07T16:50:34Z

Chenchen78:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Extension: [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] 
Acknowledgments:
This work is based on an implementation of the Poisson surface reconstruction algorithm in the VTK framework, David-Doria Arnaud-Gelas, Rensselaer Polytechnic Institute & Harvard Medical School 

Author: Chenxi-Zhang (SPL & FDU) 
Contributor1: David-Doria Arnaud-Gelas (Rensselaer Polytechnic Institute & Harvard Medical School) 
Contributor2: Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe (Johns Hopkins University) 
Contributor3: Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
Contact: Chenxi-Zhang, <email>chenxizhang@fudan.edu.cn</email> 

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
A SurfaceReconstruction model produces a surface from a segmented contour. The input is a mask and the output is a surface


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
|[[Image:InputMask.png|thumb|340px|Input Mask Image]]
|[[Image:OutputSurface.png|thumb|250px|Output Surface]]
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

{|
|
|[[Image:ModuleUI.png|thumb|280px|Module UI]]
|}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}
* Xiaodong Tao, Ming-ching Chang, “A Skull Stripping Method Using Deformable Surface and Tissue Classification”, SPIE Medical Imaging, San Diego, CA, 2010.
* Ming-ching Chang, Xiaodong Tao “Subvoxel Segmentation and Representation of Brain Cortex Using Fuzzy Clustering and Gradient Vector Diffusion”, SPIE Medical Imaging, San Diego, CA, 2010.


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

File:InputMask.png

2014-05-07T16:49:21Z

Chenchen78:

File:OutputSurface.png

2014-05-07T16:45:30Z

Chenchen78:

File:ModuleUI.png

2014-05-07T16:41:29Z

Chenchen78:

Documentation/Nightly/Extensions/SurfaceReconstruction

2014-05-07T16:32:08Z

Chenchen78:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Extension: [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] 
Acknowledgments:
This work is based on an implementation of the Poisson surface reconstruction algorithm in the VTK framework, David-Doria Arnaud-Gelas, Rensselaer Polytechnic Institute & Harvard Medical School 

Author: Chenxi-Zhang (SPL & FDU) 
Contributor1: David-Doria Arnaud-Gelas (Rensselaer Polytechnic Institute & Harvard Medical School) 
Contributor2: Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe (Johns Hopkins University) 
Contributor3: Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
Contact: Chenxi-Zhang, <email>chenxizhang@fudan.edu.cn</email> 

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
A SurfaceReconstruction model produces a surface from a segmented contour. The input is a mask and the output is a surface


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
|[[Image:InputMask.png|thumb|340px|Input Mask Image]]
|[[Image:.png|thumb|340px|Brain mask as contour]]
|[[Image:.png|thumb|375px|Brain surface]]

[[File:Example.jpg]]

|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

{|
|
|[[Image:.png|thumb|280px|Module UI]]
|}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}
* Xiaodong Tao, Ming-ching Chang, “A Skull Stripping Method Using Deformable Surface and Tissue Classification”, SPIE Medical Imaging, San Diego, CA, 2010.
* Ming-ching Chang, Xiaodong Tao “Subvoxel Segmentation and Representation of Brain Cortex Using Fuzzy Clustering and Gradient Vector Diffusion”, SPIE Medical Imaging, San Diego, CA, 2010.


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

File:InputMask.PNG

2014-05-07T16:30:00Z

Chenchen78:

Documentation/Nightly/Extensions/SurfaceReconstruction

2014-05-07T16:26:27Z

Chenchen78:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Extension: [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] 
Acknowledgments:
This work is based on an implementation of the Poisson surface reconstruction algorithm in the VTK framework, David-Doria Arnaud-Gelas, Rensselaer Polytechnic Institute & Harvard Medical School 

Author: Chenxi-Zhang (SPL & FDU) 
Contributor1: David-Doria Arnaud-Gelas (Rensselaer Polytechnic Institute & Harvard Medical School) 
Contributor2: Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe (Johns Hopkins University) 
Contributor3: Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
Contact: Chenxi-Zhang, <email>chenxizhang@fudan.edu.cn</email> 

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
A SurfaceReconstruction model produces a surface from a segmented contour. The input is a mask and the output is a surface


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
|[[InputMask.png|thumb|340px|Input Mask Image]]
|[[Image:.png|thumb|340px|Brain mask as contour]]
|[[Image:.png|thumb|375px|Brain surface]]

[[File:Example.jpg]]

|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

{|
|
|[[Image:.png|thumb|280px|Module UI]]
|}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}
* Xiaodong Tao, Ming-ching Chang, “A Skull Stripping Method Using Deformable Surface and Tissue Classification”, SPIE Medical Imaging, San Diego, CA, 2010.
* Ming-ching Chang, Xiaodong Tao “Subvoxel Segmentation and Representation of Brain Cortex Using Fuzzy Clustering and Gradient Vector Diffusion”, SPIE Medical Imaging, San Diego, CA, 2010.


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

Documentation/Nightly/Extensions/SurfaceReconstruction

2014-05-07T16:15:57Z

Chenchen78:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Extension: [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] 
Acknowledgments:
This work is based on an implementation of the Poisson surface reconstruction algorithm in the VTK framework, David-Doria Arnaud-Gelas, Rensselaer Polytechnic Institute & Harvard Medical School 

Author: Chenxi-Zhang (SPL & FDU) 
Contributor1: David-Doria Arnaud-Gelas (Rensselaer Polytechnic Institute & Harvard Medical School) 
Contributor2: Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe (Johns Hopkins University) 
Contributor3: Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
Contact: Chenxi-Zhang, <email>chenxizhang@fudan.edu.cn</email> 

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
A SurfaceReconstruction model produces a surface from a segmented contour. The input is a mask and the output is a surface


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
|[[InputMask.png|thumb|340px|Input Mask Image]]
|[[Image:.png|thumb|340px|Brain mask as contour]]
|[[Image:.png|thumb|375px|Brain surface]]
|
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

{|
|
|[[Image:.png|thumb|280px|Module UI]]
|}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}
* Xiaodong Tao, Ming-ching Chang, “A Skull Stripping Method Using Deformable Surface and Tissue Classification”, SPIE Medical Imaging, San Diego, CA, 2010.
* Ming-ching Chang, Xiaodong Tao “Subvoxel Segmentation and Representation of Brain Cortex Using Fuzzy Clustering and Gradient Vector Diffusion”, SPIE Medical Imaging, San Diego, CA, 2010.


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

Documentation/Nightly/Extensions/SurfaceReconstruction

2014-05-06T20:54:28Z

Chenchen78:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Extension: [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] 
Acknowledgments:
This work is part of . 
Implementation of . 
. 
Author: David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe ({{collaborator|name|}}) 
Contributor1:Chenxi-Zhang ({{collaborator|name|}}) Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
Contact: Chenxi-Zhang, <email>chenxizhang@fudan.edu.cn</email> 

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
|[[.png|thumb|340px|Input T1 Image]]
|[[Image:.png|thumb|340px|Brain mask as contour]]
|[[Image:.png|thumb|375px|Brain surface]]
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

{|
|
|[[Image:.png|thumb|280px|Module UI]]
|}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}
* Xiaodong Tao, Ming-ching Chang, “A Skull Stripping Method Using Deformable Surface and Tissue Classification”, SPIE Medical Imaging, San Diego, CA, 2010.
* Ming-ching Chang, Xiaodong Tao “Subvoxel Segmentation and Representation of Brain Cortex Using Fuzzy Clustering and Gradient Vector Diffusion”, SPIE Medical Imaging, San Diego, CA, 2010.


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

Documentation/Nightly/Extensions/SurfaceReconstruction

2014-05-06T20:49:37Z

Chenchen78: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude>  {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Extension: [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] 
Acknowledgments:
This work is part of . 
Implementation of . 
. 
Author: David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe ({{collaborator|name|}}) 
Contributor1:Chenxi-Zhang ({{collaborator|name|}}) Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
Contact: Chenxi-Zhang, <email>chenxizhang@fudan.edu.cn</email> 

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
|[[Image:SkullStripperInput-3-6.png|thumb|340px|Input T1 Image]]
|[[Image:SkullStripperOutput-3-6.png|thumb|340px|Brain mask as contour]]
|[[Image:SkullStripperSurface-3-6.png|thumb|375px|Brain surface]]
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

{|
|
|[[Image:SkullStripper-3-6.png|thumb|280px|Module UI]]
|}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}
* Xiaodong Tao, Ming-ching Chang, “A Skull Stripping Method Using Deformable Surface and Tissue Classification”, SPIE Medical Imaging, San Diego, CA, 2010.
* Ming-ching Chang, Xiaodong Tao “Subvoxel Segmentation and Representation of Brain Cortex Using Fuzzy Clustering and Gradient Vector Diffusion”, SPIE Medical Imaging, San Diego, CA, 2010.


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

Documentation/Nightly/Extensions

2014-05-06T20:31:22Z

Chenchen78:

<noinclude>{{documentation/versioncheck}}</noinclude>
<noinclude>
__TOC__
</noinclude>= Extensions by Category =

==Cat 1==

==Cat 2==
*[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )
* [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)
* [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)
* [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Andras Lasso, Kevin Wang, Greg Sharp, Steve Pieper)
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]
** [[Documentation/{{documentation/version}}/Modules/SubjectHierarchy|Subject hierarchy]]
** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)
* [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)
* [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Andinet Enquobahrie, Luis G. Torres)
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)
* [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]
** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]
** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]
* [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)
* [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/MultidimData|Multidimensional data]] (Andras Lasso, Matthew Holden, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)
* [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)
* [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)
** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]
** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]

==Cat 3==
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)
* [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)
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