Slicer Wiki - User contributions [en]

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-03-09T20:05:02Z

Chamel69: /* Use cases and sample queries */

Back to [[Slicer3:UIDesign#Link_to_user_specifications_and_design_sketches_for_a_Qt-based_Query_Widget_for_XNAT_Enterprise|Qt-based Query Widget for XNE]]

Back to [[Slicer3:UIDesign|Slicer3 UI Design]]

= Overview =
User Experience and Presentation Layer design of Qt-based query widget for Enterprise that uses the REST API.

[[File:PipeLine.png]]

= Use cases and sample queries =

'''Single dataset per run'''

There are 3 different possibilities:

A/

1) User uses XNAT browser in Slicer to select for example hippocampi segmentation in a Schizophrenia study.
The output will be a group object.

2) User selects in Shape Analysis module the group object as an input and create a new group object as an output.

3) User starts analysis (button), this will create a Batchmake script, running the shape analysis on all the dataset in the group object.

4) Slicer loads new group object upon completion of shape analysis tool.

B/

1) User selects data on local disk.
Steps 2 to 4 stay the same.

C/

1)User loads an existing group object
Steps 2 to 4 stay the same.

'''Multiple dataset per run'''

To run for example Cortical Thickness with T1, T2 and PD.

'''Statistics'''

1) run single or multiple dataset

2) patient variable like age, gender, groupe, IQ...

3) output -> group object

Actually for our Shape Analysis Tool, the input is a a CSV file.
This file has these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2..

'''Question/Issue'''

1) Does Browser load all segmentation onto local disk?

2) Can BatchMake directly load XNAT data? (We are interested in a lazy download, for example BactMake download only what is necessary).

= Design Sketches =

= Workflows =

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-03-09T20:04:46Z

Chamel69: /* Use cases and sample queries */

Back to [[Slicer3:UIDesign#Link_to_user_specifications_and_design_sketches_for_a_Qt-based_Query_Widget_for_XNAT_Enterprise|Qt-based Query Widget for XNE]]

Back to [[Slicer3:UIDesign|Slicer3 UI Design]]

= Overview =
User Experience and Presentation Layer design of Qt-based query widget for Enterprise that uses the REST API.

[[File:PipeLine.png]]

= Use cases and sample queries =

'''Single dataset per run'''

There are 3 different possibilities:

A/

1) User uses XNAT browser in Slicer to select for example hippocampi segmentation in a Schizophrenia study.
The output will be a group object.

2) User selects in Shape Analysis module the group object as an input and create a new group object as an output.

3) User starts analysis (button), this will create a Batchmake script, running the shape analysis on all the dataset in the group object.

4) Slicer loads new group object upon completion of shape analysis tool.

B/

1) User selects data on local disk.
Steps 2 to 4 stay the same.

C/

1)User loads an existing group object
Steps 2 to 4 stay the same.

'''Multiple dataset per run'''

To run for example Cortical Thickness with T1, T2 and PD.

'''Statistics'''

1) run single ou multiple dataset

2) patient variable like age, gender, groupe, IQ...

3) output -> group object

Actually for our Shape Analysis Tool, the input is a a CSV file.
This file has these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2..

'''Question/Issue'''

1) Does Browser load all segmentation onto local disk?

2) Can BatchMake directly load XNAT data? (We are interested in a lazy download, for example BactMake download only what is necessary).

= Design Sketches =

= Workflows =

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-03-03T15:31:04Z

Chamel69: /* Use cases and sample queries */

Back to [[Slicer3:UIDesign#Link_to_user_specifications_and_design_sketches_for_a_Qt-based_Query_Widget_for_XNAT_Enterprise|Qt-based Query Widget for XNE]]

Back to [[Slicer3:UIDesign|Slicer3 UI Design]]

= Overview =
User Experience and Presentation Layer design of Qt-based query widget for Enterprise that uses the REST API.

[[File:PipeLine.png]]

= Use cases and sample queries =

'''Single dataset per run'''

There are 3 different possibilities:

A/

1) User uses XNAT browser in Slicer to select for example hippocampi segmentation in a Schizophrenia study.
The output will be a group object.

2) User selects in Shape Analysis module the group object as an input and create a new group object as an output.

3) User starts analysis (button), this will create a Batchmake script, running the shape analysis on all the dataset in the group object.

4) Slicer loads new group object upon completion of shape analysis tool.

B/

1) User selects data on local disk.
Steps 2 to 4 stay the same.

C/

1)User loads an existing group object
Steps 2 to 4 stay the same.

As an input for our Slicer Module for Shape Analysis, we would like to use a CSV file.
This file needs to have these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2...

'''Multiple dataset per run'''

To run for example Cortical Thickness with T1, T2 and PD.

'''Statistics'''

1) run single ou multiple dataset

2) patient variable like age, gender, groupe, IQ...

3) output -> group object

Actually for our Shape Analysis Tool, the input is a a CSV file.
This file has these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2..

'''Question/Issue'''

1) Does Browser load all segmentation onto local disk?

2) Can BatchMake directly load XNAT data? (We are interested in a lazy download, for example BactMake download only what is necessary).

== Headline text ==

= Design Sketches =

= Workflows =

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-03-03T15:30:35Z

Chamel69: /* Use cases and sample queries */

Back to [[Slicer3:UIDesign#Link_to_user_specifications_and_design_sketches_for_a_Qt-based_Query_Widget_for_XNAT_Enterprise|Qt-based Query Widget for XNE]]

Back to [[Slicer3:UIDesign|Slicer3 UI Design]]

= Overview =
User Experience and Presentation Layer design of Qt-based query widget for Enterprise that uses the REST API.

[[File:PipeLine.png]]

= Use cases and sample queries =

'''Single dataset per run'''

There are 3 different possibilities:

A/

1) User uses XNAT browser in Slicer to select for example hippocampi segmentation in a Schizophrenia study.
The output will be a group object.

2) User selects in Shape Analysis module the group object as an input and create a new group object as an output.

3) User starts analysis (button), this will create a Batchmake script, running the shape analysis on all the dataset in the group object.

4) Slicer loads new group object upon completion of shape analysis tool.

B/

1) User selects data on local disk.
Steps 2 to 4 stay the same.

C/

1)User loads an existing group object
Steps 2 to 4 stay the same.

As an input for our Slicer Module for Shape Analysis, we would like to use a CSV file.
This file needs to have these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2...

'''Multiple dataset per run'''

To run for example Cortical Thickness with T1, T2 and PD.

'''Statistics'''

1) run single ou multiple dataset

2) patient variable like age, gender, groupe, IQ...

3) output -> group object

Actually for our Shape Analysis Tool, the input is a a CSV file.
This file has these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2..

'''Question/Issue'''

1) Does Browser load all segmentation onto local disk?

2) Can BatchMake directly load XNAT data? (We are interested in a lazy download, for example BactMake download only what is necessary).

== Headline text ==

= Design Sketches =

= Workflows =

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-03-03T15:30:23Z

Chamel69: /* Use cases and sample queries */

Back to [[Slicer3:UIDesign#Link_to_user_specifications_and_design_sketches_for_a_Qt-based_Query_Widget_for_XNAT_Enterprise|Qt-based Query Widget for XNE]]

Back to [[Slicer3:UIDesign|Slicer3 UI Design]]

= Overview =
User Experience and Presentation Layer design of Qt-based query widget for Enterprise that uses the REST API.

[[File:PipeLine.png]]

= Use cases and sample queries =

'''Single dataset per run'''

There are 3 different possibilities:

A/

1) User uses XNAT browser in Slicer to select for example hippocampi segmentation in a Schizophrenia study.
The output will be a group object.

2) User selects in Shape Analysis module the group object as an input and create a new group object as an output.

3) User starts analysis (button), this will create a Batchmake script, running the shape analysis on all the dataset in the group object.

4) Slicer loads new group object upon completion of shape analysis tool.

B/

1) User selects data on local disk.
Steps 2 to 4 stay the same.

C/

1)User loads an existing group object
Steps 2 to 4 stay the same.

As an input for our Slicer Module for Shape Analysis, we would like to use a CSV file.
This file needs to have these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2...

'''Multiple dataset per run'''

To run for example Cortical Thickness with T1, T2 and PD.

'''Statistics'''

1) run single ou multiple dataset

2) patient variable like age, gender, groupe, IQ...

3) output -> group object

Actually for our Shape Analysis Tool, the input is a a CSV file.
This file has these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2..

'''Question/Issue'''

1) Does Browser load all segmentation onto local disk?

2) Can BatchMake directly load XNAT data? (We are interested in a lazy download, for example BactMake download only what is necessary).

== Headline text ==

= Design Sketches =

= Workflows =

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-03-03T15:28:23Z

Chamel69: /* Use cases and sample queries */

Back to [[Slicer3:UIDesign#Link_to_user_specifications_and_design_sketches_for_a_Qt-based_Query_Widget_for_XNAT_Enterprise|Qt-based Query Widget for XNE]]

Back to [[Slicer3:UIDesign|Slicer3 UI Design]]

= Overview =
User Experience and Presentation Layer design of Qt-based query widget for Enterprise that uses the REST API.

[[File:PipeLine.png]]

= Use cases and sample queries =

'''Single dataset per run'''

There are 3 different possibilities:

A/

1) User uses XNAT browser in Slicer to select for example hippocampi segmentation in a Schizophrenia study.
The output will be a group object.

2) User selects in Shape Analysis module the group object as an input and create a new group object as an output.

3) User starts analysis (button), this will create a Batchmake script, running the shape analysis on all the dataset in the group object.

4) Slicer loads new group object upon completion of shape analysis tool.

B/

1) User selects data on local disk.
Steps 2 to 4 stay the same.

C/

1)User loads an existing group object
Steps 2 to 4 stay the same.

As an input for our Slicer Module for Shape Analysis, we would like to use a CSV file.
This file needs to have these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2...

'''Multiple dataset per run'''

To run for example Cortical Thickness with T1, T2 and PD.

'''Statistics'''

1) run single ou multiple dataset
2) patient variable like age, gender, groupe, IQ...
3) output -> group object

Actually for our Shape Analysis Tool, the input is a a CSV file.
This file has these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2..

'''Question/Issue'''

1) Does Browser load all segmentation onto local disk?
2) Can BatchMake directly load XNAT data? (We are interested in a lazy download, for example BactMake download only what is necessary).

== Headline text ==

= Design Sketches =

= Workflows =

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-03-03T15:28:00Z

Chamel69: /* Use cases and sample queries */

Back to [[Slicer3:UIDesign#Link_to_user_specifications_and_design_sketches_for_a_Qt-based_Query_Widget_for_XNAT_Enterprise|Qt-based Query Widget for XNE]]

Back to [[Slicer3:UIDesign|Slicer3 UI Design]]

= Overview =
User Experience and Presentation Layer design of Qt-based query widget for Enterprise that uses the REST API.

[[File:PipeLine.png]]

= Use cases and sample queries =

'''Single dataset per run'''

There are 3 different possibilities:

A/

1) User uses XNAT browser in Slicer to select for example hippocampi segmentation in a Schizophrenia study.
The output will be a group object.

2) User selects in Shape Analysis module the group object as an input and create a new group object as an output. ==

3) User starts analysis (button), this will create a Batchmake script, running the shape analysis on all the dataset in the group object.
4) Slicer loads new group object upon completion of shape analysis tool.

B/

1) User selects data on local disk.
Steps 2 to 4 stay the same.

C/

1)User loads an existing group object
Steps 2 to 4 stay the same.

As an input for our Slicer Module for Shape Analysis, we would like to use a CSV file.
This file needs to have these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2...

'''Multiple dataset per run'''

To run for example Cortical Thickness with T1, T2 and PD.

'''Statistics'''

1) run single ou multiple dataset
2) patient variable like age, gender, groupe, IQ...
3) output -> group object

Actually for our Shape Analysis Tool, the input is a a CSV file.
This file has these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2..

'''Question/Issue'''

1) Does Browser load all segmentation onto local disk?
2) Can BatchMake directly load XNAT data? (We are interested in a lazy download, for example BactMake download only what is necessary).

== Headline text ==

= Design Sketches =

= Workflows =

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-03-03T15:27:37Z

Chamel69: /* Use cases and sample queries */

Back to [[Slicer3:UIDesign#Link_to_user_specifications_and_design_sketches_for_a_Qt-based_Query_Widget_for_XNAT_Enterprise|Qt-based Query Widget for XNE]]

Back to [[Slicer3:UIDesign|Slicer3 UI Design]]

= Overview =
User Experience and Presentation Layer design of Qt-based query widget for Enterprise that uses the REST API.

[[File:PipeLine.png]]

= Use cases and sample queries =

'''Single dataset per run'''

There are 3 different possibilities:

A/

1) User uses XNAT browser in Slicer to select for example hippocampi segmentation in a Schizophrenia study.
The output will be a group object.

2) User selects in Shape Analysis module the group object as an input and create a new group object as an output. ==

3) User starts analysis (button), this will create a Batchmake script, running the shape analysis on all the dataset in the group object.
4) Slicer loads new group object upon completion of shape analysis tool.

B/

1) User selects data on local disk.
Steps 2 to 4 stay the same.

C/

1)User loads an existing group object
Steps 2 to 4 stay the same.

As an input for our Slicer Module for Shape Analysis, we would like to use a CSV file.
This file needs to have these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2...

'''Multiple dataset per run'''
To run for example Cortical Thickness with T1, T2 and PD.

'''Statistics'''
1) run single ou multiple dataset
2) patient variable like age, gender, groupe, IQ...
3) output -> group object

Actually for our Shape Analysis Tool, the input is a a CSV file.
This file has these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2..

'''Question/Issue'''
1) Does Browser load all segmentation onto local disk?
2) Can BatchMake directly load XNAT data? (We are interested in a lazy download, for example BactMake download only what is necessary).

== Headline text ==

= Design Sketches =

= Workflows =

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-03-03T15:27:05Z

Chamel69: /* Use cases and sample queries */

Back to [[Slicer3:UIDesign#Link_to_user_specifications_and_design_sketches_for_a_Qt-based_Query_Widget_for_XNAT_Enterprise|Qt-based Query Widget for XNE]]

Back to [[Slicer3:UIDesign|Slicer3 UI Design]]

= Overview =
User Experience and Presentation Layer design of Qt-based query widget for Enterprise that uses the REST API.

[[File:PipeLine.png]]

= Use cases and sample queries =

'''Single dataset per run'''

There are 3 different possibilities:

A/
1) User uses XNAT browser in Slicer to select for example hippocampi segmentation in a Schizophrenia study.
The output will be a group object.

2) User selects in Shape Analysis module the group object as an input and create a new group object as an output. ==

3) User starts analysis (button), this will create a Batchmake script, running the shape analysis on all the dataset in the group object.
4) Slicer loads new group object upon completion of shape analysis tool.

B/
1) User selects data on local disk.
Steps 2 to 4 stay the same.

C/
1)User loads an existing group object
Steps 2 to 4 stay the same.

As an input for our Slicer Module for Shape Analysis, we would like to use a CSV file.
This file needs to have these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2...

'''Multiple dataset per run'''
To run for example Cortical Thickness with T1, T2 and PD.
'''
Statistics'''
1) run single ou multiple dataset
2) patient variable like age, gender, groupe, IQ...
3) output -> group object

Actually for our Shape Analysis Tool, the input is a a CSV file.
This file has these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2..

'''Question/Issue'''
1) Does Browser load all segmentation onto local disk?
2) Can BatchMake directly load XNAT data? (We are interested in a lazy download, for example BactMake download only what is necessary).

== Headline text ==

= Design Sketches =

= Workflows =

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-03-03T15:26:45Z

Chamel69: /* Use cases and sample queries */

Back to [[Slicer3:UIDesign#Link_to_user_specifications_and_design_sketches_for_a_Qt-based_Query_Widget_for_XNAT_Enterprise|Qt-based Query Widget for XNE]]

Back to [[Slicer3:UIDesign|Slicer3 UI Design]]

= Overview =
User Experience and Presentation Layer design of Qt-based query widget for Enterprise that uses the REST API.

[[File:PipeLine.png]]

= Use cases and sample queries =

'''Single dataset per run'''

There are 3 different possibilities:

A/
1) User uses XNAT browser in Slicer to select for example hippocampi segmentation in a Schizophrenia study.
The output will be a group object.

== 2) User selects in Shape Analysis module the group object as an input and create a new group object as an output. ==

3) User starts analysis (button), this will create a Batchmake script, running the shape analysis on all the dataset in the group object.
4) Slicer loads new group object upon completion of shape analysis tool.

B/
1) User selects data on local disk.
Steps 2 to 4 stay the same.

C/
1)User loads an existing group object
Steps 2 to 4 stay the same.

As an input for our Slicer Module for Shape Analysis, we would like to use a CSV file.
This file needs to have these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2...

'''Multiple dataset per run'''
To run for example Cortical Thickness with T1, T2 and PD.
'''
Statistics'''
1) run single ou multiple dataset
2) patient variable like age, gender, groupe, IQ...
3) output -> group object

Actually for our Shape Analysis Tool, the input is a a CSV file.
This file has these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2..

'''Question/Issue'''
1) Does Browser load all segmentation onto local disk?
2) Can BatchMake directly load XNAT data? (We are interested in a lazy download, for example BactMake download only what is necessary).

== Headline text ==

= Design Sketches =

= Workflows =

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-03-03T15:26:00Z

Chamel69: /* Use cases and sample queries */

Back to [[Slicer3:UIDesign#Link_to_user_specifications_and_design_sketches_for_a_Qt-based_Query_Widget_for_XNAT_Enterprise|Qt-based Query Widget for XNE]]

Back to [[Slicer3:UIDesign|Slicer3 UI Design]]

= Overview =
User Experience and Presentation Layer design of Qt-based query widget for Enterprise that uses the REST API.

[[File:PipeLine.png]]

= Use cases and sample queries =

'''Single dataset per run'''

There are 3 different possibilities:

A/
1) User uses XNAT browser in Slicer to select for example hippocampi segmentation in a Schizophrenia study.
The output will be a group object.
2) User selects in Shape Analysis module the group object as an input and create a new group object as an output.
3) User starts analysis (button), this will create a Batchmake script, running the shape analysis on all the dataset in the group object.
4) Slicer loads new group object upon completion of shape analysis tool.

B/
1) User selects data on local disk.
Steps 2 to 4 stay the same.

C/
1)User loads an existing group object
Steps 2 to 4 stay the same.

As an input for our Slicer Module for Shape Analysis, we would like to use a CSV file.
This file needs to have these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2...

'''Multiple dataset per run'''
To run for example Cortical Thickness with T1, T2 and PD.
'''
Statistics'''
1) run single ou multiple dataset
2) patient variable like age, gender, groupe, IQ...
3) output -> group object

Actually for our Shape Analysis Tool, the input is a a CSV file.
This file has these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2..

'''Question/Issue'''
1) Does Browser load all segmentation onto local disk?
2) Can BatchMake directly load XNAT data? (We are interested in a lazy download, for example BactMake download only what is necessary).

= Design Sketches =

= Workflows =

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-03-03T15:15:31Z

Chamel69: /* Use cases and sample queries */

Back to [[Slicer3:UIDesign#Link_to_user_specifications_and_design_sketches_for_a_Qt-based_Query_Widget_for_XNAT_Enterprise|Qt-based Query Widget for XNE]]

Back to [[Slicer3:UIDesign|Slicer3 UI Design]]

= Overview =
User Experience and Presentation Layer design of Qt-based query widget for Enterprise that uses the REST API.

[[File:PipeLine.png]]

= Use cases and sample queries =

'''Single dataset per runBold text'''

There are different possibilities:

A/
1) User uses XNAT browser in Slicer to select for example hippocampi segmentation in a Schizophrenia study.
The output will be a group object.
2) User selects in Shape Analysis module the group object as an input and create a new group object as an output.
3) User starts analysis (button), this will create a Batchmake script, running the sahpe analysis on all the dataset in the group object.
4) Slicer loads new group object upon completion of shape analysis tool.

B/
1) User selects data on local disk.
Steps 2 to 4 stay the same.

C/
1)User loads an existing group object
Steps 2 to 4 stay the same.

As an input for our Slicer Module for Shape Analysis, we would like to use a CSV file.
This file needs to have these fields: Case ID, Case Description, Input file1, Input file description1, Input file2, Input file description2...

'''Multiple dataset per run'''
To run for example Cortical Thikness with T1, T2 and PD.

= Design Sketches =

= Workflows =

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-02-18T15:36:59Z

Chamel69:

File:PipeLine.png

2010-02-18T15:35:59Z

Chamel69: General Pipeline

General Pipeline

Slicer3:UIDesign:WorkingProblems:XNAT Enterprise QueryWidget

2010-02-18T15:35:05Z

Chamel69: