Slicer Wiki - User contributions [en]

Slicer4:VisualBlog

2014-01-10T16:27:08Z

Cates:

This is the Slicer 4 visual blog. Please click [[Slicer3:VisualBlog| here]] if you are looking for the old Slicer 3 visual blog.

<gallery caption="2013" widths="200px" perrow="4">
Image:UKFTractography_CC.jpg|[http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/UKFTractography UKFTractography] is a module for computing tractography of DWI images using an unscented Kalman filter. Because of its 2-tensor algorithm, it is able to model fiber crossings and capture many more fibers than a single tensor algorithm.
Image:SPV1.png|[http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ShapePopulationViewer ShapePopulationViewer] is an external tool that allows the user to dynamically interact with multiple surfaces at the same time : an interesting tool for shape visualisation and comparison. It now is available as a Slicer Extension.
Image:SlicerRT_0.13_SubjectHierarchy_ProstateEclipseLoaded.png|[http://www.na-mic.org/Wiki/index.php/2014_Winter_Project_Week:SubjectHierarchy The Subject hierarchy module and mechanism] organizes and handles loaded data in the RT extension package, providing processing and analysis features through plugins. It aspires to be a convenient central organizing point for many of the operations that 3D Slicer and its extensions perform.
Image:DownloadFile 2.jpg|[[Documentation/4.3/Modules/DataStore|The Data Store]] allows a user to easily upload and download MRB files.
Image:SlicerRT ContourRepresentations.png|[[Documentation/4.3/Modules/Contours|The Contours module]] manages contours in the RT extension package.
Image:MultiVolume-4.3.0-update.png| [[Documentation/4.3/Modules/MultiVolumeExplorer|MultiVolumeExplorer module]] has been updated to include the capability to plot multivolume pixel values from 2 multivolumes at the same time. This feature is particularly helpful while visualizing the results of model fits, such as those produced by the updated [[Documentation/4.3/Modules/PkModeling|PkModeling extension]].
Image:MatlabBridgeLogo.png| A new extension allows to run matlab scripts without having to recompile Slicer. For more information see [[Documentation/Nightly/Extensions/MatlabBridge|'''here''']]
Image:ExtensionManagerScreen Shot 2013-05-23 at 9.40.23 PM.png| Extension Manager, the slicer multiplatform Appstore is open for business and free.
Image:ScreenshotLobeSegmentation.png| Semi-automatic lobe segmentation for regional lung disease analysis as part of the Chest Imaging Platform funded by NHLBI 1R01HL116931
Image:CMRToolkit.png|The [http://capulet.med.utah.edu/namic/cmrslicer Cardiac MR Extension] provides tools for segmentation and analysis of heart tissue and structure for treatment and diagnosis of Atrial Fibrillation.
</gallery>
<gallery caption="2012" widths="200px" perrow="4">
Image:BoxChart.png| A box plot
Image:2012-09-07-FetalBrain.png| Fetal brain development. The visualization is using volume rendering and the Multivolume modules in Slicer 4. Click [[media:FetalBrainGowth.mov|'''here''']] for the full movie (~24mb). Data downloaded from [http://biomedic.doc.ic.ac.uk/brain-development/index.php?n=Main.Fetal Imperial College].
Image:Screen Shot 2012-09-05 at 10.01.35 AM.png|Leveraging multi viewer layout to arrange 6 slices in the 3D viewer
Image:ComplexQueryWithImage.jpg|Visualization of complex query "motor system + mass + straight gyrus" using the faceted query module
Image:Screen Shot 2012-05-30 at 8.03.23 AM.png| Fibers colored by their mean orientation is now available in the Tractography Display module
Image:SlicerRT-0.2_screenshot.png|[https://www.assembla.com/spaces/slicerrt/milestones/1089853-slicerrt-0-2-release SlicerRT 0.2] has been released! [https://www.assembla.com/spaces/slicerrt/ SlicerRT] is 3D Slicer with extensions for radiotherapy research, which is developed by SparKit project with the contributions from Slicer community.
Image:Screen Shot 2012-04-11 at 8.07.36 AM.png|The new extension manager
Image:Screen Shot 2012-04-11 at 8.11.59 AM.png|Up to date download statistics
Image:Screen Shot 2012-04-05 at 11.35.08 AM.png|A combination of ROI cropping of streamlines, fiducial based seeding and labelmap seeding allows to assess the deformation of streamlines which are due to tumor based deformations.
Image:2012-03-05-downloadpage.png|New download page which highlights the operating system of the downloading system.
Image:2012-03-04-Welcome.png|New look for the Welcome module and the "Load/Save" toolbar
Image:2012-03-04-DWI2FBT.png|Step one of the DWI to Full-brain tractography wizard
Image:2012-03-04-SliceViewerControllers.png|Improved 2-stage user interface for the Slice Viewer Controllers
Image:2012-03-04-DicomWidget.png|Updated Dicom Module
Image:2012-03-04-CoreModuleIcons.png|Updated Icons for the Core Modules
Image:2012-03-04-CompareViews.png|Updated CompareViewers and Viewer Controler Module
Image:Screen Shot 2012-02-23 at 7.53.51 AM.png|MultiVolumeExplorer with support for charting. See [[Documentation/Snapshot/Modules/MultiVolumeExplorer|here]] for more information.
Image:Screen Shot 2012-02-09 at 10.11.08 AM.png|[[Documentation/4.0/Modules/LabelStatistics|Label Statistics]] with charting and visualization
Image:3D Slicer 4.0.1.2012-02-03 180.png|Image Quantification with Label Statistics, Charting, and Volume Rendering
Image:Slicer2011-gource.png|Frame from a movie of slicer code activity in 2011. See '''[http://boggs.bwh.harvard.edu/slicer/slicer4-2011-gource.x264.mp4 the full movie here]'''. Made with [http://code.google.com/p/gource/ gource]. Inspired by a [http://vimeo.com/33989053 an ITKv4 gource movie]
Image:AnEarlyChartView.png|A ChartView using QWebView and jqPlot with plots defined in MRML
Image:ALaterChartView.png|A ChartView using QWebView and jqPlot with plots defined in MRML
Image:ABarChartView.png|A bar chart tie MRML to a QWebView
</gallery>
<gallery caption="2011" widths="200px" perrow="4">
Image:Prostate multiparametric visualization Slicer4.png|Compareviewers
Image:Slicer4_ChangeTracker_Ad.png|ChangeTracker visualization of analysis results
Image:Slicer4-SceneViewGUI.jpeg|Sceneview Module
Image:Selection 142.png|Dicom widget
Image:3D Slicer 4.0.gamma-2011-10-20 141.png|Endoscopy module
Image:VolumeRendering-CTA-2011.png|Volumerendering of a CT angiogram
Image:Tumor-Volume-Rendering-PostGad-2011.png|Volumerendering of a subvolume of a post Gadolinium T1 weighted image of a GBM. Note the relation of surrounding vessels to the tumor.
Image:2011-11-12-CroppingWholeBrainTractography-detail.png|Note the deformation of the corpus callosum fibers
Image:2011-11-12-CroppingWholeBrainTractography.png|Using an ROI to crop streamlines from a whole brain tractography. The streamlines display color by orientation, the ellipsoids are displaying fractional anisotropy.
Image:Screen Shot 2011-11-02 at 1.52.42 PM.png|Annotation module 2011-11
Image:MainGUI-2011-11.png|Main Gui with pop-up slice controllers
Image:DataProbe-2011-11.png|The Data Probe
Image:ModelsModule-2011-11.png|Models organized in a hierarchy
Image:Conventional-Widescreen-10-2011.png|New Look Oct 2011
Image:QSlicerVolumeRenderingModule-DualView.png|Dual camera, dual 3D viewer
Image:4.0-Main-GUI-Facelift.png|After the facelift for the GUI
Image:QSlicerModelsModule.png|New models module appearance
Image:SlicerWithVolumeRendering.png|Slicer4 with Volume Rendering
Image:Slicer4-AnnotationGUI.jpg|Slicer4 Annotation Module
Image:SlicerWithDTI.png|Glyph display on cross-sections
Image:FirstCompareViewInSlicer4-2011.png| First CompareView in Slicer4 2011
Image:2011-01-24-Annotation.png| Slicer 4 Annotation Module 2011-01-24
Image:2011-01-24-Annotation.png| Slicer 4 Annotation Module 2011-01-24
Image:LiveUltrasoundModule-Slicer4.jpg| Slicer 4 Live ultrasound module for IGT spine procedures
Image:LiveUltrasoundModule-Slicer4_2.jpg| Slicer 4 Live ultrasound module for IGT prostate procedures
</gallery>

<gallery caption="2010" widths="200px" perrow="4">
Image:2010-SlicerAM QtAnnotation.png| Slicer 4 Annotation Module
Image:SlicerQT-2009-12-10.png|Slicer with Qt only
Image:QSlicerROIModule.png| ROI Module
</gallery>

Slicer4:VisualBlog

2014-01-09T19:29:24Z

Cates:

This is the Slicer 4 visual blog. Please click [[Slicer3:VisualBlog| here]] if you are looking for the old Slicer 3 visual blog.

<gallery caption="2013" widths="200px" perrow="4">
Image:SlicerRT_0.13_SubjectHierarchy_ProstateEclipseLoaded.png|[http://www.na-mic.org/Wiki/index.php/2014_Winter_Project_Week:SubjectHierarchy The Subject hierarchy module and mechanism] organizes and handles loaded data in the RT extension package, providing processing and analysis features through plugins. It aspires to be a convenient central organizing point for many of the operations that 3D Slicer and its extensions perform.
Image:DownloadFile 2.jpg|[[Documentation/4.3/Modules/DataStore|The Data Store]] allows a user to easily upload and download MRB files.
Image:SlicerRT ContourRepresentations.png|[[Documentation/4.3/Modules/Contours|The Contours module]] manages contours in the RT extension package.
Image:MultiVolume-4.3.0-update.png| [[Documentation/4.3/Modules/MultiVolumeExplorer|MultiVolumeExplorer module]] has been updated to include the capability to plot multivolume pixel values from 2 multivolumes at the same time. This feature is particularly helpful while visualizing the results of model fits, such as those produced by the updated [[Documentation/4.3/Modules/PkModeling|PkModeling extension]].
Image:MatlabBridgeLogo.png| A new extension allows to run matlab scripts without having to recompile Slicer. For more information see [[Documentation/Nightly/Extensions/MatlabBridge|'''here''']]
Image:ExtensionManagerScreen Shot 2013-05-23 at 9.40.23 PM.png| Extension Manager, the slicer multiplatform Appstore is open for business and free.
Image:ScreenshotLobeSegmentation.png| Semi-automatic lobe segmentation for regional lung disease analysis as part of the Chest Imaging Platform funded by NHLBI 1R01HL116931
Image:CMRToolkit.png|The CARMA Cardiac MR Extension provides tools for segmentation and analysis of heart tissue and structure for treatment and diagnosis of Atrial Fibrillation.
</gallery>
<gallery caption="2012" widths="200px" perrow="4">
Image:BoxChart.png| A box plot
Image:2012-09-07-FetalBrain.png| Fetal brain development. The visualization is using volume rendering and the Multivolume modules in Slicer 4. Click [[media:FetalBrainGowth.mov|'''here''']] for the full movie (~24mb). Data downloaded from [http://biomedic.doc.ic.ac.uk/brain-development/index.php?n=Main.Fetal Imperial College].
Image:Screen Shot 2012-09-05 at 10.01.35 AM.png|Leveraging multi viewer layout to arrange 6 slices in the 3D viewer
Image:ComplexQueryWithImage.jpg|Visualization of complex query "motor system + mass + straight gyrus" using the faceted query module
Image:Screen Shot 2012-05-30 at 8.03.23 AM.png| Fibers colored by their mean orientation is now available in the Tractography Display module
Image:SlicerRT-0.2_screenshot.png|[https://www.assembla.com/spaces/slicerrt/milestones/1089853-slicerrt-0-2-release SlicerRT 0.2] has been released! [https://www.assembla.com/spaces/slicerrt/ SlicerRT] is 3D Slicer with extensions for radiotherapy research, which is developed by SparKit project with the contributions from Slicer community.
Image:Screen Shot 2012-04-11 at 8.07.36 AM.png|The new extension manager
Image:Screen Shot 2012-04-11 at 8.11.59 AM.png|Up to date download statistics
Image:Screen Shot 2012-04-05 at 11.35.08 AM.png|A combination of ROI cropping of streamlines, fiducial based seeding and labelmap seeding allows to assess the deformation of streamlines which are due to tumor based deformations.
Image:2012-03-05-downloadpage.png|New download page which highlights the operating system of the downloading system.
Image:2012-03-04-Welcome.png|New look for the Welcome module and the "Load/Save" toolbar
Image:2012-03-04-DWI2FBT.png|Step one of the DWI to Full-brain tractography wizard
Image:2012-03-04-SliceViewerControllers.png|Improved 2-stage user interface for the Slice Viewer Controllers
Image:2012-03-04-DicomWidget.png|Updated Dicom Module
Image:2012-03-04-CoreModuleIcons.png|Updated Icons for the Core Modules
Image:2012-03-04-CompareViews.png|Updated CompareViewers and Viewer Controler Module
Image:Screen Shot 2012-02-23 at 7.53.51 AM.png|MultiVolumeExplorer with support for charting. See [[Documentation/Snapshot/Modules/MultiVolumeExplorer|here]] for more information.
Image:Screen Shot 2012-02-09 at 10.11.08 AM.png|[[Documentation/4.0/Modules/LabelStatistics|Label Statistics]] with charting and visualization
Image:3D Slicer 4.0.1.2012-02-03 180.png|Image Quantification with Label Statistics, Charting, and Volume Rendering
Image:Slicer2011-gource.png|Frame from a movie of slicer code activity in 2011. See '''[http://boggs.bwh.harvard.edu/slicer/slicer4-2011-gource.x264.mp4 the full movie here]'''. Made with [http://code.google.com/p/gource/ gource]. Inspired by a [http://vimeo.com/33989053 an ITKv4 gource movie]
Image:AnEarlyChartView.png|A ChartView using QWebView and jqPlot with plots defined in MRML
Image:ALaterChartView.png|A ChartView using QWebView and jqPlot with plots defined in MRML
Image:ABarChartView.png|A bar chart tie MRML to a QWebView
</gallery>
<gallery caption="2011" widths="200px" perrow="4">
Image:Prostate multiparametric visualization Slicer4.png|Compareviewers
Image:Slicer4_ChangeTracker_Ad.png|ChangeTracker visualization of analysis results
Image:Slicer4-SceneViewGUI.jpeg|Sceneview Module
Image:Selection 142.png|Dicom widget
Image:3D Slicer 4.0.gamma-2011-10-20 141.png|Endoscopy module
Image:VolumeRendering-CTA-2011.png|Volumerendering of a CT angiogram
Image:Tumor-Volume-Rendering-PostGad-2011.png|Volumerendering of a subvolume of a post Gadolinium T1 weighted image of a GBM. Note the relation of surrounding vessels to the tumor.
Image:2011-11-12-CroppingWholeBrainTractography-detail.png|Note the deformation of the corpus callosum fibers
Image:2011-11-12-CroppingWholeBrainTractography.png|Using an ROI to crop streamlines from a whole brain tractography. The streamlines display color by orientation, the ellipsoids are displaying fractional anisotropy.
Image:Screen Shot 2011-11-02 at 1.52.42 PM.png|Annotation module 2011-11
Image:MainGUI-2011-11.png|Main Gui with pop-up slice controllers
Image:DataProbe-2011-11.png|The Data Probe
Image:ModelsModule-2011-11.png|Models organized in a hierarchy
Image:Conventional-Widescreen-10-2011.png|New Look Oct 2011
Image:QSlicerVolumeRenderingModule-DualView.png|Dual camera, dual 3D viewer
Image:4.0-Main-GUI-Facelift.png|After the facelift for the GUI
Image:QSlicerModelsModule.png|New models module appearance
Image:SlicerWithVolumeRendering.png|Slicer4 with Volume Rendering
Image:Slicer4-AnnotationGUI.jpg|Slicer4 Annotation Module
Image:SlicerWithDTI.png|Glyph display on cross-sections
Image:FirstCompareViewInSlicer4-2011.png| First CompareView in Slicer4 2011
Image:2011-01-24-Annotation.png| Slicer 4 Annotation Module 2011-01-24
Image:2011-01-24-Annotation.png| Slicer 4 Annotation Module 2011-01-24
Image:LiveUltrasoundModule-Slicer4.jpg| Slicer 4 Live ultrasound module for IGT spine procedures
Image:LiveUltrasoundModule-Slicer4_2.jpg| Slicer 4 Live ultrasound module for IGT prostate procedures
</gallery>

<gallery caption="2010" widths="200px" perrow="4">
Image:2010-SlicerAM QtAnnotation.png| Slicer 4 Annotation Module
Image:SlicerQT-2009-12-10.png|Slicer with Qt only
Image:QSlicerROIModule.png| ROI Module
</gallery>

File:CMRToolkit.png

2014-01-09T19:26:32Z

Cates: