Slicer Wiki - User contributions [en]

Documentation/Nightly/Modules/WorkflowOrganizer

2015-07-05T19:25:34Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Soichiro Tani (BWH, SUMS), Koichiro Murakami (SUMS), Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and buttons you created based on XML format as follows.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 
[3] [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions Extension List for Slicer Nightly version] 
[4] [http://www.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions Extension List for Slicer 4.4] 


{{documentation/{{documentation/version}}/module-section|Logo}}
{|

|[[File:WoLogo.png|128x128px]]
|}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

File:WoLogo.png

2015-07-05T19:24:24Z

Ayamada:

Documentation/Nightly/Modules/WorkflowOrganizer

2015-07-03T05:25:31Z

Ayamada: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude>  {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Soichiro Tani (BWH, SUMS), Koichiro Murakami (SUMS), Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and buttons you created based on XML format as follows.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 
[3] [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions Extension List for Slicer Nightly version] 
[4] [http://www.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions Extension List for Slicer 4.4] 


{{documentation/{{documentation/version}}/module-section|Logo}}
{|
|[[File:IgtWizard.png|128x128px]]
|}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/SlicerToKiwiExporter

2015-04-02T00:57:23Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
'''Extension:''' [[Documentation/{{documentation/version}}/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] 
'''Acknowledgments:'''
This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. 
'''Author:''' Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
'''Contributor1:''' Pat Marion ({{collaborator|name|kitware}}) 
'''Contributor2:''' Steve Pieper ({{collaborator|name|isomics}}) 
'''Contributor3:''' Atsushi Yamada (Shiga University of Medical Science) 
'''Contact:''' Jean-Christophe Fillion-Robin, <email>jchris.fillionr@kitware.com</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|kitware}}|{{collaborator|longname|kitware}}
|{{collaborator|logo|namic}}|{{collaborator|longname|isomics}}
|Image:SumsLogo2014.jpg|Shiga University of Medical Science
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

The SlicerToKiwiExporter module provides Slicer user with any easy way to export [[Documentation/{{documentation/version}}/Modules/Models|models]] into a [http://www.kiwiviewer.org/ KiwiViewer] scene file.

[http://www.kiwiviewer.org/ KiwiViewer] is a free, open-source visualization app for exploring scientific and medical datasets that runs on Android and iOS mobile devices with multi-touch interaction. [http://www.kiwiviewer.org/ KiwiViewer] supports a variety of file formats, including obj, stl, ply, and vtk. Datasets may be loaded into [http://www.kiwiviewer.org/ KiwiViewer] from the SD card, email attachments, or Midas, or DropBox, or downloaded from a URL.

The following tutorials will provide steo-by-step instructions to:
* [[#Saving_a_MRML_scene_as_KiwiViewer_scene_file|Export a Slicer MRML scene into KiwiViewer scene file]]
* [[#Uploading_KiwiViewer_Scene_file_to_Midas|Upload the exported file onto a shared data source]]
* [[#Loading_KiwiViewer_Scene_file_from_Midas|Load the exported file into KiwiViewer]]


{{documentation/{{documentation/version}}/module-section|Use Cases}}

Interactively show an audience models created using slicer on an iPad.


{{documentation/{{documentation/version}}/module-section|Tutorials}}

== Saving a MRML scene as KiwiViewer scene file ==
<gallery widths=450px perrow=2>
File:SlicerToKiwiExporter-Slicer-install.png|Install extension named "SlicerToKiwiExporter". [[Documentation/{{documentation/version}}/SlicerApplication/ExtensionsManager#Installing_an_extension|Need help?]]
File:SlicerToKiwiExporter SaveDialog Select-file-format 1.png| (1) Open save dialog and (2) select <code>KiwiViewer File (*.kiwi.zip)</code> file format.
File:SlicerToKiwiExporter SaveDialog Select-dest-directory 2.png| (3 & 4) Choose destination directory
File:SlicerToKiwiExporter SaveDialog ClickSave 3.png| (5) Click on "Save" to export the MRML scene.
File:SlicerToKiwiExporter_CheckLog_4.png| Open error dialog (View -> Error Log) and check log.
In this example, we can confirm that the MRML scene has been exported to <code>/home/jchris/Desktop/MyKiwiFiles/nac-hncma-atlas2013-Slicer4Version.kiwi.zip</code>
</gallery>

== Uploading KiwiViewer Scene file to Midas ==

<ol start="1" style="list-style-type: decimal;">

{{:Documentation/{{documentation/version}}/Developers/Tutorials/CreateMidasAccount/steps}}

<li>If not already done, send an email on the [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-user slicer users list] asking to be granted write permission on the [http://slicer.kitware.com/midas3/folder/1682 KiwiViewer folder].
<pre>
To: slicer-user@bwh.harvard.edu
Subject: Asking permission to write to the KiwiViewer folder
Hi,

I am user KiwiView application to [...]

Could you grant user YourUserName write access to the KiwiViewer folder ?

</pre></li>

<li>Go to http://slicer.kitware.com, click on Communities (1) and select "NA-MIC" (2)
[[File:SlicerToKiwiExporter-UploadMidas SelectNAMIC Community.png|450px]]

<li>Browse, select the destination folder "Kiwiviewer" (3) and click on "Upload here" (4)
[[File:SlicerToKiwiExporter-UploadMidas Upload.png|450px]]
</li>

<li>Select one or more files (5) and click "Upload" button (6)
[[File:SlicerToKiwiExporter-UploadMidas SelectFile-and-upload.png|450px]]
</li>

<li>Upload is complete
[[File:SlicerToKiwiExporter-UploadMidas complete.png|450px]]
</li>

</ol>

== Loading KiwiViewer Scene file from Midas ==

<gallery widths=265px heights=350px perrow=4>
File:SlicerToKiwiExporter Kiwiviewer 1.PNG|Tap on "Info" (1) and enter "http://slicer.kitware.com/midas3" for "Midas Host"
File:SlicerToKiwiExporter Kiwiviewer 2.PNG|Tap on "Documents", then tap on "Midas" in the available Network Data Sources
File:SlicerToKiwiExporter Kiwiviewer 3.PNG|Tap on "NA-MIC"
File:SlicerToKiwiExporter Kiwiviewer 4.PNG|Tap on "Public"
File:SlicerToKiwiExporter Kiwiviewer 5.PNG|Tap on "KiwiViewer"
File:SlicerToKiwiExporter Kiwiviewer 6.PNG|Tap on KiwiViewer scene file to download and visualize.
File:SlicerToKiwiExporter Kiwiviewer 7.PNG|Download in progress ...
File:SlicerToKiwiExporter Kiwiviewer 8.PNG|Downloaded file is automatically loaded
File:SlicerToKiwiExporter Kiwiviewer 9.PNG|Tap on "Settings" icon to see data properties
</gallery>


{{documentation/{{documentation/version}}/module-section|Panels and their use}}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}

Source: https://github.com/jcfr/SlicerToKiwiExporter

{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

Documentation/Nightly/Modules/SlicerToKiwiExporter

2015-04-02T00:20:44Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
'''Extension:''' [[Documentation/{{documentation/version}}/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] 
'''Acknowledgments:'''
This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. 
'''Author:''' Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
'''Contributor1:''' Pat Marion ({{collaborator|name|kitware}}) 
'''Contributor2:''' Steve Pieper ({{collaborator|name|isomics}}) 
'''Contributor3:''' Atsushi Yamada (Shiga University of Medical Science) 
'''Contact:''' Jean-Christophe Fillion-Robin, <email>jchris.fillionr@kitware.com</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|kitware}}|{{collaborator|longname|kitware}}
|{{collaborator|logo|namic}}|{{collaborator|longname|isomics}}
|Image:SumsLogo2014.jpg|Shiga University of Medical Science(SUMS) in Japan
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

The SlicerToKiwiExporter module provides Slicer user with any easy way to export [[Documentation/{{documentation/version}}/Modules/Models|models]] into a [http://www.kiwiviewer.org/ KiwiViewer] scene file.

[http://www.kiwiviewer.org/ KiwiViewer] is a free, open-source visualization app for exploring scientific and medical datasets that runs on Android and iOS mobile devices with multi-touch interaction. [http://www.kiwiviewer.org/ KiwiViewer] supports a variety of file formats, including obj, stl, ply, and vtk. Datasets may be loaded into [http://www.kiwiviewer.org/ KiwiViewer] from the SD card, email attachments, or Midas, or DropBox, or downloaded from a URL.

The following tutorials will provide steo-by-step instructions to:
* [[#Saving_a_MRML_scene_as_KiwiViewer_scene_file|Export a Slicer MRML scene into KiwiViewer scene file]]
* [[#Uploading_KiwiViewer_Scene_file_to_Midas|Upload the exported file onto a shared data source]]
* [[#Loading_KiwiViewer_Scene_file_from_Midas|Load the exported file into KiwiViewer]]


{{documentation/{{documentation/version}}/module-section|Use Cases}}

Interactively show an audience models created using slicer on an iPad.


{{documentation/{{documentation/version}}/module-section|Tutorials}}

== Saving a MRML scene as KiwiViewer scene file ==
<gallery widths=450px perrow=2>
File:SlicerToKiwiExporter-Slicer-install.png|Install extension named "SlicerToKiwiExporter". [[Documentation/{{documentation/version}}/SlicerApplication/ExtensionsManager#Installing_an_extension|Need help?]]
File:SlicerToKiwiExporter SaveDialog Select-file-format 1.png| (1) Open save dialog and (2) select <code>KiwiViewer File (*.kiwi.zip)</code> file format.
File:SlicerToKiwiExporter SaveDialog Select-dest-directory 2.png| (3 & 4) Choose destination directory
File:SlicerToKiwiExporter SaveDialog ClickSave 3.png| (5) Click on "Save" to export the MRML scene.
File:SlicerToKiwiExporter_CheckLog_4.png| Open error dialog (View -> Error Log) and check log.
In this example, we can confirm that the MRML scene has been exported to <code>/home/jchris/Desktop/MyKiwiFiles/nac-hncma-atlas2013-Slicer4Version.kiwi.zip</code>
</gallery>

== Uploading KiwiViewer Scene file to Midas ==

<ol start="1" style="list-style-type: decimal;">

{{:Documentation/{{documentation/version}}/Developers/Tutorials/CreateMidasAccount/steps}}

<li>If not already done, send an email on the [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-user slicer users list] asking to be granted write permission on the [http://slicer.kitware.com/midas3/folder/1682 KiwiViewer folder].
<pre>
To: slicer-user@bwh.harvard.edu
Subject: Asking permission to write to the KiwiViewer folder
Hi,

I am user KiwiView application to [...]

Could you grant user YourUserName write access to the KiwiViewer folder ?

</pre></li>

<li>Go to http://slicer.kitware.com, click on Communities (1) and select "NA-MIC" (2)
[[File:SlicerToKiwiExporter-UploadMidas SelectNAMIC Community.png|450px]]

<li>Browse, select the destination folder "Kiwiviewer" (3) and click on "Upload here" (4)
[[File:SlicerToKiwiExporter-UploadMidas Upload.png|450px]]
</li>

<li>Select one or more files (5) and click "Upload" button (6)
[[File:SlicerToKiwiExporter-UploadMidas SelectFile-and-upload.png|450px]]
</li>

<li>Upload is complete
[[File:SlicerToKiwiExporter-UploadMidas complete.png|450px]]
</li>

</ol>

== Loading KiwiViewer Scene file from Midas ==

<gallery widths=265px heights=350px perrow=4>
File:SlicerToKiwiExporter Kiwiviewer 1.PNG|Tap on "Info" (1) and enter "http://slicer.kitware.com/midas3" for "Midas Host"
File:SlicerToKiwiExporter Kiwiviewer 2.PNG|Tap on "Documents", then tap on "Midas" in the available Network Data Sources
File:SlicerToKiwiExporter Kiwiviewer 3.PNG|Tap on "NA-MIC"
File:SlicerToKiwiExporter Kiwiviewer 4.PNG|Tap on "Public"
File:SlicerToKiwiExporter Kiwiviewer 5.PNG|Tap on "KiwiViewer"
File:SlicerToKiwiExporter Kiwiviewer 6.PNG|Tap on KiwiViewer scene file to download and visualize.
File:SlicerToKiwiExporter Kiwiviewer 7.PNG|Download in progress ...
File:SlicerToKiwiExporter Kiwiviewer 8.PNG|Downloaded file is automatically loaded
File:SlicerToKiwiExporter Kiwiviewer 9.PNG|Tap on "Settings" icon to see data properties
</gallery>


{{documentation/{{documentation/version}}/module-section|Panels and their use}}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}

Source: https://github.com/jcfr/SlicerToKiwiExporter

{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

Documentation/Nightly/Modules/SlicerToKiwiExporter

2015-04-02T00:19:56Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
'''Extension:''' [[Documentation/{{documentation/version}}/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] 
'''Acknowledgments:'''
This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. 
'''Author:''' Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
'''Contributor1:''' Pat Marion ({{collaborator|name|kitware}}) 
'''Contributor2:''' Steve Pieper ({{collaborator|name|isomics}}) 
'''Contributor3:''' Atsushi Yamada (Shiga University of Medical Science) 
'''Contact:''' Jean-Christophe Fillion-Robin, <email>jchris.fillionr@kitware.com</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|kitware}}|{{collaborator|longname|kitware}}
|{{collaborator|logo|namic}}|{{collaborator|longname|isomics}}
|Image:SumsLogo2014.jpg|{{Shiga University of Medical Science(SUMS) in Japan}}
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

The SlicerToKiwiExporter module provides Slicer user with any easy way to export [[Documentation/{{documentation/version}}/Modules/Models|models]] into a [http://www.kiwiviewer.org/ KiwiViewer] scene file.

[http://www.kiwiviewer.org/ KiwiViewer] is a free, open-source visualization app for exploring scientific and medical datasets that runs on Android and iOS mobile devices with multi-touch interaction. [http://www.kiwiviewer.org/ KiwiViewer] supports a variety of file formats, including obj, stl, ply, and vtk. Datasets may be loaded into [http://www.kiwiviewer.org/ KiwiViewer] from the SD card, email attachments, or Midas, or DropBox, or downloaded from a URL.

The following tutorials will provide steo-by-step instructions to:
* [[#Saving_a_MRML_scene_as_KiwiViewer_scene_file|Export a Slicer MRML scene into KiwiViewer scene file]]
* [[#Uploading_KiwiViewer_Scene_file_to_Midas|Upload the exported file onto a shared data source]]
* [[#Loading_KiwiViewer_Scene_file_from_Midas|Load the exported file into KiwiViewer]]


{{documentation/{{documentation/version}}/module-section|Use Cases}}

Interactively show an audience models created using slicer on an iPad.


{{documentation/{{documentation/version}}/module-section|Tutorials}}

== Saving a MRML scene as KiwiViewer scene file ==
<gallery widths=450px perrow=2>
File:SlicerToKiwiExporter-Slicer-install.png|Install extension named "SlicerToKiwiExporter". [[Documentation/{{documentation/version}}/SlicerApplication/ExtensionsManager#Installing_an_extension|Need help?]]
File:SlicerToKiwiExporter SaveDialog Select-file-format 1.png| (1) Open save dialog and (2) select <code>KiwiViewer File (*.kiwi.zip)</code> file format.
File:SlicerToKiwiExporter SaveDialog Select-dest-directory 2.png| (3 & 4) Choose destination directory
File:SlicerToKiwiExporter SaveDialog ClickSave 3.png| (5) Click on "Save" to export the MRML scene.
File:SlicerToKiwiExporter_CheckLog_4.png| Open error dialog (View -> Error Log) and check log.
In this example, we can confirm that the MRML scene has been exported to <code>/home/jchris/Desktop/MyKiwiFiles/nac-hncma-atlas2013-Slicer4Version.kiwi.zip</code>
</gallery>

== Uploading KiwiViewer Scene file to Midas ==

<ol start="1" style="list-style-type: decimal;">

{{:Documentation/{{documentation/version}}/Developers/Tutorials/CreateMidasAccount/steps}}

<li>If not already done, send an email on the [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-user slicer users list] asking to be granted write permission on the [http://slicer.kitware.com/midas3/folder/1682 KiwiViewer folder].
<pre>
To: slicer-user@bwh.harvard.edu
Subject: Asking permission to write to the KiwiViewer folder
Hi,

I am user KiwiView application to [...]

Could you grant user YourUserName write access to the KiwiViewer folder ?

</pre></li>

<li>Go to http://slicer.kitware.com, click on Communities (1) and select "NA-MIC" (2)
[[File:SlicerToKiwiExporter-UploadMidas SelectNAMIC Community.png|450px]]

<li>Browse, select the destination folder "Kiwiviewer" (3) and click on "Upload here" (4)
[[File:SlicerToKiwiExporter-UploadMidas Upload.png|450px]]
</li>

<li>Select one or more files (5) and click "Upload" button (6)
[[File:SlicerToKiwiExporter-UploadMidas SelectFile-and-upload.png|450px]]
</li>

<li>Upload is complete
[[File:SlicerToKiwiExporter-UploadMidas complete.png|450px]]
</li>

</ol>

== Loading KiwiViewer Scene file from Midas ==

<gallery widths=265px heights=350px perrow=4>
File:SlicerToKiwiExporter Kiwiviewer 1.PNG|Tap on "Info" (1) and enter "http://slicer.kitware.com/midas3" for "Midas Host"
File:SlicerToKiwiExporter Kiwiviewer 2.PNG|Tap on "Documents", then tap on "Midas" in the available Network Data Sources
File:SlicerToKiwiExporter Kiwiviewer 3.PNG|Tap on "NA-MIC"
File:SlicerToKiwiExporter Kiwiviewer 4.PNG|Tap on "Public"
File:SlicerToKiwiExporter Kiwiviewer 5.PNG|Tap on "KiwiViewer"
File:SlicerToKiwiExporter Kiwiviewer 6.PNG|Tap on KiwiViewer scene file to download and visualize.
File:SlicerToKiwiExporter Kiwiviewer 7.PNG|Download in progress ...
File:SlicerToKiwiExporter Kiwiviewer 8.PNG|Downloaded file is automatically loaded
File:SlicerToKiwiExporter Kiwiviewer 9.PNG|Tap on "Settings" icon to see data properties
</gallery>


{{documentation/{{documentation/version}}/module-section|Panels and their use}}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}

Source: https://github.com/jcfr/SlicerToKiwiExporter

{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

Documentation/Nightly/Modules/SlicerToKiwiExporter

2015-04-02T00:17:05Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
'''Extension:''' [[Documentation/{{documentation/version}}/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] 
'''Acknowledgments:'''
This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. 
'''Author:''' Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
'''Contributor1:''' Pat Marion ({{collaborator|name|kitware}}) 
'''Contributor2:''' Steve Pieper ({{collaborator|name|isomics}}) 
'''Contributor3:''' Atsushi Yamada (Shiga University of Medical Science) 
'''Contact:''' Jean-Christophe Fillion-Robin, <email>jchris.fillionr@kitware.com</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|kitware}}|{{collaborator|longname|kitware}}
|{{collaborator|logo|namic}}|{{collaborator|longname|isomics}}
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

The SlicerToKiwiExporter module provides Slicer user with any easy way to export [[Documentation/{{documentation/version}}/Modules/Models|models]] into a [http://www.kiwiviewer.org/ KiwiViewer] scene file.

[http://www.kiwiviewer.org/ KiwiViewer] is a free, open-source visualization app for exploring scientific and medical datasets that runs on Android and iOS mobile devices with multi-touch interaction. [http://www.kiwiviewer.org/ KiwiViewer] supports a variety of file formats, including obj, stl, ply, and vtk. Datasets may be loaded into [http://www.kiwiviewer.org/ KiwiViewer] from the SD card, email attachments, or Midas, or DropBox, or downloaded from a URL.

The following tutorials will provide steo-by-step instructions to:
* [[#Saving_a_MRML_scene_as_KiwiViewer_scene_file|Export a Slicer MRML scene into KiwiViewer scene file]]
* [[#Uploading_KiwiViewer_Scene_file_to_Midas|Upload the exported file onto a shared data source]]
* [[#Loading_KiwiViewer_Scene_file_from_Midas|Load the exported file into KiwiViewer]]


{{documentation/{{documentation/version}}/module-section|Use Cases}}

Interactively show an audience models created using slicer on an iPad.


{{documentation/{{documentation/version}}/module-section|Tutorials}}

== Saving a MRML scene as KiwiViewer scene file ==
<gallery widths=450px perrow=2>
File:SlicerToKiwiExporter-Slicer-install.png|Install extension named "SlicerToKiwiExporter". [[Documentation/{{documentation/version}}/SlicerApplication/ExtensionsManager#Installing_an_extension|Need help?]]
File:SlicerToKiwiExporter SaveDialog Select-file-format 1.png| (1) Open save dialog and (2) select <code>KiwiViewer File (*.kiwi.zip)</code> file format.
File:SlicerToKiwiExporter SaveDialog Select-dest-directory 2.png| (3 & 4) Choose destination directory
File:SlicerToKiwiExporter SaveDialog ClickSave 3.png| (5) Click on "Save" to export the MRML scene.
File:SlicerToKiwiExporter_CheckLog_4.png| Open error dialog (View -> Error Log) and check log.
In this example, we can confirm that the MRML scene has been exported to <code>/home/jchris/Desktop/MyKiwiFiles/nac-hncma-atlas2013-Slicer4Version.kiwi.zip</code>
</gallery>

== Uploading KiwiViewer Scene file to Midas ==

<ol start="1" style="list-style-type: decimal;">

{{:Documentation/{{documentation/version}}/Developers/Tutorials/CreateMidasAccount/steps}}

<li>If not already done, send an email on the [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-user slicer users list] asking to be granted write permission on the [http://slicer.kitware.com/midas3/folder/1682 KiwiViewer folder].
<pre>
To: slicer-user@bwh.harvard.edu
Subject: Asking permission to write to the KiwiViewer folder
Hi,

I am user KiwiView application to [...]

Could you grant user YourUserName write access to the KiwiViewer folder ?

</pre></li>

<li>Go to http://slicer.kitware.com, click on Communities (1) and select "NA-MIC" (2)
[[File:SlicerToKiwiExporter-UploadMidas SelectNAMIC Community.png|450px]]

<li>Browse, select the destination folder "Kiwiviewer" (3) and click on "Upload here" (4)
[[File:SlicerToKiwiExporter-UploadMidas Upload.png|450px]]
</li>

<li>Select one or more files (5) and click "Upload" button (6)
[[File:SlicerToKiwiExporter-UploadMidas SelectFile-and-upload.png|450px]]
</li>

<li>Upload is complete
[[File:SlicerToKiwiExporter-UploadMidas complete.png|450px]]
</li>

</ol>

== Loading KiwiViewer Scene file from Midas ==

<gallery widths=265px heights=350px perrow=4>
File:SlicerToKiwiExporter Kiwiviewer 1.PNG|Tap on "Info" (1) and enter "http://slicer.kitware.com/midas3" for "Midas Host"
File:SlicerToKiwiExporter Kiwiviewer 2.PNG|Tap on "Documents", then tap on "Midas" in the available Network Data Sources
File:SlicerToKiwiExporter Kiwiviewer 3.PNG|Tap on "NA-MIC"
File:SlicerToKiwiExporter Kiwiviewer 4.PNG|Tap on "Public"
File:SlicerToKiwiExporter Kiwiviewer 5.PNG|Tap on "KiwiViewer"
File:SlicerToKiwiExporter Kiwiviewer 6.PNG|Tap on KiwiViewer scene file to download and visualize.
File:SlicerToKiwiExporter Kiwiviewer 7.PNG|Download in progress ...
File:SlicerToKiwiExporter Kiwiviewer 8.PNG|Downloaded file is automatically loaded
File:SlicerToKiwiExporter Kiwiviewer 9.PNG|Tap on "Settings" icon to see data properties
</gallery>


{{documentation/{{documentation/version}}/module-section|Panels and their use}}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}

Source: https://github.com/jcfr/SlicerToKiwiExporter

{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

Documentation/Nightly/Modules/SlicerToKiwiExporter

2015-04-02T00:16:14Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
'''Extension:''' [[Documentation/{{documentation/version}}/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] 
'''Acknowledgments:'''
This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. 
'''Author:''' Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
'''Contributor1:''' Pat Marion ({{collaborator|name|kitware}}) 
'''Contributor2:''' Steve Pieper ({{collaborator|name|isomics}}) 
'''Contributor3:''' Atsushi Yamada ({{collaborator|name|Shiga}}) 
'''Contact:''' Jean-Christophe Fillion-Robin, <email>jchris.fillionr@kitware.com</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|kitware}}|{{collaborator|longname|kitware}}
|{{collaborator|logo|namic}}|{{collaborator|longname|isomics}}
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

The SlicerToKiwiExporter module provides Slicer user with any easy way to export [[Documentation/{{documentation/version}}/Modules/Models|models]] into a [http://www.kiwiviewer.org/ KiwiViewer] scene file.

[http://www.kiwiviewer.org/ KiwiViewer] is a free, open-source visualization app for exploring scientific and medical datasets that runs on Android and iOS mobile devices with multi-touch interaction. [http://www.kiwiviewer.org/ KiwiViewer] supports a variety of file formats, including obj, stl, ply, and vtk. Datasets may be loaded into [http://www.kiwiviewer.org/ KiwiViewer] from the SD card, email attachments, or Midas, or DropBox, or downloaded from a URL.

The following tutorials will provide steo-by-step instructions to:
* [[#Saving_a_MRML_scene_as_KiwiViewer_scene_file|Export a Slicer MRML scene into KiwiViewer scene file]]
* [[#Uploading_KiwiViewer_Scene_file_to_Midas|Upload the exported file onto a shared data source]]
* [[#Loading_KiwiViewer_Scene_file_from_Midas|Load the exported file into KiwiViewer]]


{{documentation/{{documentation/version}}/module-section|Use Cases}}

Interactively show an audience models created using slicer on an iPad.


{{documentation/{{documentation/version}}/module-section|Tutorials}}

== Saving a MRML scene as KiwiViewer scene file ==
<gallery widths=450px perrow=2>
File:SlicerToKiwiExporter-Slicer-install.png|Install extension named "SlicerToKiwiExporter". [[Documentation/{{documentation/version}}/SlicerApplication/ExtensionsManager#Installing_an_extension|Need help?]]
File:SlicerToKiwiExporter SaveDialog Select-file-format 1.png| (1) Open save dialog and (2) select <code>KiwiViewer File (*.kiwi.zip)</code> file format.
File:SlicerToKiwiExporter SaveDialog Select-dest-directory 2.png| (3 & 4) Choose destination directory
File:SlicerToKiwiExporter SaveDialog ClickSave 3.png| (5) Click on "Save" to export the MRML scene.
File:SlicerToKiwiExporter_CheckLog_4.png| Open error dialog (View -> Error Log) and check log.
In this example, we can confirm that the MRML scene has been exported to <code>/home/jchris/Desktop/MyKiwiFiles/nac-hncma-atlas2013-Slicer4Version.kiwi.zip</code>
</gallery>

== Uploading KiwiViewer Scene file to Midas ==

<ol start="1" style="list-style-type: decimal;">

{{:Documentation/{{documentation/version}}/Developers/Tutorials/CreateMidasAccount/steps}}

<li>If not already done, send an email on the [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-user slicer users list] asking to be granted write permission on the [http://slicer.kitware.com/midas3/folder/1682 KiwiViewer folder].
<pre>
To: slicer-user@bwh.harvard.edu
Subject: Asking permission to write to the KiwiViewer folder
Hi,

I am user KiwiView application to [...]

Could you grant user YourUserName write access to the KiwiViewer folder ?

</pre></li>

<li>Go to http://slicer.kitware.com, click on Communities (1) and select "NA-MIC" (2)
[[File:SlicerToKiwiExporter-UploadMidas SelectNAMIC Community.png|450px]]

<li>Browse, select the destination folder "Kiwiviewer" (3) and click on "Upload here" (4)
[[File:SlicerToKiwiExporter-UploadMidas Upload.png|450px]]
</li>

<li>Select one or more files (5) and click "Upload" button (6)
[[File:SlicerToKiwiExporter-UploadMidas SelectFile-and-upload.png|450px]]
</li>

<li>Upload is complete
[[File:SlicerToKiwiExporter-UploadMidas complete.png|450px]]
</li>

</ol>

== Loading KiwiViewer Scene file from Midas ==

<gallery widths=265px heights=350px perrow=4>
File:SlicerToKiwiExporter Kiwiviewer 1.PNG|Tap on "Info" (1) and enter "http://slicer.kitware.com/midas3" for "Midas Host"
File:SlicerToKiwiExporter Kiwiviewer 2.PNG|Tap on "Documents", then tap on "Midas" in the available Network Data Sources
File:SlicerToKiwiExporter Kiwiviewer 3.PNG|Tap on "NA-MIC"
File:SlicerToKiwiExporter Kiwiviewer 4.PNG|Tap on "Public"
File:SlicerToKiwiExporter Kiwiviewer 5.PNG|Tap on "KiwiViewer"
File:SlicerToKiwiExporter Kiwiviewer 6.PNG|Tap on KiwiViewer scene file to download and visualize.
File:SlicerToKiwiExporter Kiwiviewer 7.PNG|Download in progress ...
File:SlicerToKiwiExporter Kiwiviewer 8.PNG|Downloaded file is automatically loaded
File:SlicerToKiwiExporter Kiwiviewer 9.PNG|Tap on "Settings" icon to see data properties
</gallery>


{{documentation/{{documentation/version}}/module-section|Panels and their use}}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}

Source: https://github.com/jcfr/SlicerToKiwiExporter

{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

Documentation/Nightly/Modules/SlicerToKiwiExporter

2015-04-02T00:15:35Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
'''Extension:''' [[Documentation/{{documentation/version}}/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] 
'''Acknowledgments:'''
This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. 
'''Author:''' Jean-Christophe Fillion-Robin ({{collaborator|name|kitware}}) 
'''Contributor1:''' Pat Marion ({{collaborator|name|kitware}}) 
'''Contributor2:''' Steve Pieper ({{collaborator|name|isomics}}) 
'''Contributor3:''' Atsushi Yamada ({{collaborator|name|Shiga University of Medical Science}}) 
'''Contact:''' Jean-Christophe Fillion-Robin, <email>jchris.fillionr@kitware.com</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|{{collaborator|logo|kitware}}|{{collaborator|longname|kitware}}
|{{collaborator|logo|namic}}|{{collaborator|longname|isomics}}
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}

The SlicerToKiwiExporter module provides Slicer user with any easy way to export [[Documentation/{{documentation/version}}/Modules/Models|models]] into a [http://www.kiwiviewer.org/ KiwiViewer] scene file.

[http://www.kiwiviewer.org/ KiwiViewer] is a free, open-source visualization app for exploring scientific and medical datasets that runs on Android and iOS mobile devices with multi-touch interaction. [http://www.kiwiviewer.org/ KiwiViewer] supports a variety of file formats, including obj, stl, ply, and vtk. Datasets may be loaded into [http://www.kiwiviewer.org/ KiwiViewer] from the SD card, email attachments, or Midas, or DropBox, or downloaded from a URL.

The following tutorials will provide steo-by-step instructions to:
* [[#Saving_a_MRML_scene_as_KiwiViewer_scene_file|Export a Slicer MRML scene into KiwiViewer scene file]]
* [[#Uploading_KiwiViewer_Scene_file_to_Midas|Upload the exported file onto a shared data source]]
* [[#Loading_KiwiViewer_Scene_file_from_Midas|Load the exported file into KiwiViewer]]


{{documentation/{{documentation/version}}/module-section|Use Cases}}

Interactively show an audience models created using slicer on an iPad.


{{documentation/{{documentation/version}}/module-section|Tutorials}}

== Saving a MRML scene as KiwiViewer scene file ==
<gallery widths=450px perrow=2>
File:SlicerToKiwiExporter-Slicer-install.png|Install extension named "SlicerToKiwiExporter". [[Documentation/{{documentation/version}}/SlicerApplication/ExtensionsManager#Installing_an_extension|Need help?]]
File:SlicerToKiwiExporter SaveDialog Select-file-format 1.png| (1) Open save dialog and (2) select <code>KiwiViewer File (*.kiwi.zip)</code> file format.
File:SlicerToKiwiExporter SaveDialog Select-dest-directory 2.png| (3 & 4) Choose destination directory
File:SlicerToKiwiExporter SaveDialog ClickSave 3.png| (5) Click on "Save" to export the MRML scene.
File:SlicerToKiwiExporter_CheckLog_4.png| Open error dialog (View -> Error Log) and check log.
In this example, we can confirm that the MRML scene has been exported to <code>/home/jchris/Desktop/MyKiwiFiles/nac-hncma-atlas2013-Slicer4Version.kiwi.zip</code>
</gallery>

== Uploading KiwiViewer Scene file to Midas ==

<ol start="1" style="list-style-type: decimal;">

{{:Documentation/{{documentation/version}}/Developers/Tutorials/CreateMidasAccount/steps}}

<li>If not already done, send an email on the [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-user slicer users list] asking to be granted write permission on the [http://slicer.kitware.com/midas3/folder/1682 KiwiViewer folder].
<pre>
To: slicer-user@bwh.harvard.edu
Subject: Asking permission to write to the KiwiViewer folder
Hi,

I am user KiwiView application to [...]

Could you grant user YourUserName write access to the KiwiViewer folder ?

</pre></li>

<li>Go to http://slicer.kitware.com, click on Communities (1) and select "NA-MIC" (2)
[[File:SlicerToKiwiExporter-UploadMidas SelectNAMIC Community.png|450px]]

<li>Browse, select the destination folder "Kiwiviewer" (3) and click on "Upload here" (4)
[[File:SlicerToKiwiExporter-UploadMidas Upload.png|450px]]
</li>

<li>Select one or more files (5) and click "Upload" button (6)
[[File:SlicerToKiwiExporter-UploadMidas SelectFile-and-upload.png|450px]]
</li>

<li>Upload is complete
[[File:SlicerToKiwiExporter-UploadMidas complete.png|450px]]
</li>

</ol>

== Loading KiwiViewer Scene file from Midas ==

<gallery widths=265px heights=350px perrow=4>
File:SlicerToKiwiExporter Kiwiviewer 1.PNG|Tap on "Info" (1) and enter "http://slicer.kitware.com/midas3" for "Midas Host"
File:SlicerToKiwiExporter Kiwiviewer 2.PNG|Tap on "Documents", then tap on "Midas" in the available Network Data Sources
File:SlicerToKiwiExporter Kiwiviewer 3.PNG|Tap on "NA-MIC"
File:SlicerToKiwiExporter Kiwiviewer 4.PNG|Tap on "Public"
File:SlicerToKiwiExporter Kiwiviewer 5.PNG|Tap on "KiwiViewer"
File:SlicerToKiwiExporter Kiwiviewer 6.PNG|Tap on KiwiViewer scene file to download and visualize.
File:SlicerToKiwiExporter Kiwiviewer 7.PNG|Download in progress ...
File:SlicerToKiwiExporter Kiwiviewer 8.PNG|Downloaded file is automatically loaded
File:SlicerToKiwiExporter Kiwiviewer 9.PNG|Tap on "Settings" icon to see data properties
</gallery>


{{documentation/{{documentation/version}}/module-section|Panels and their use}}


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}

Source: https://github.com/jcfr/SlicerToKiwiExporter

{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Segmentation]]

Documentation/4.4/Training

2015-03-13T04:54:04Z

Ayamada: /* Slicer4 Non-rigid MR/CT registration for CT-guided liver ablation */

<noinclude>{{documentation/versioncheck}}</noinclude>
__TOC__

=Introduction: Slicer {{documentation/version}} Tutorials=

*This page contains "How to" tutorials with matched sample data sets. They demonstrate how to use the 3D Slicer environment (version {{documentation/version}} release) to accomplish certain tasks.
*For tutorials for other versions of Slicer, please visit the [[Training| Slicer training portal]].
*For "reference manual" style documentation, please visit the [[Documentation/{{documentation/version}}|Slicer {{documentation/version}} documentation page]]
*For questions related to the Slicer4 Compendium, please send an e-mail to '''[http://www.na-mic.org/Wiki/index.php/User:SPujol Sonia Pujol, Ph.D]'''

{{documentation/banner|text=Some of these tutorials are based on older releases of 3D Slicer. The concepts are still useful but bear in mind that some interface elements and features will be different in updated versions.}}

=General Introduction=

==Slicer Welcome Tutorial==
{|width="100%"
|
*The [[media:SlicerWelcome_Tutorial_SoniaPujol_2013.pdf|SlicerWelcome tutorial]] is an introduction to Slicer based on the Welcome module.
*Author: Sonia Pujol, Ph.D.
*Audience: First time users who want a general introduction to the software.
*Modules: Welcome to Slicer, Sample Data
*Based on: 3D Slicer version 4.0
|align="right"|
[[image:SlicerWelcome-image.png|250px|SlicerWelcome tutorial]]
|}

==Slicer4Minute Tutorial==
{|width="100%"
|
*The [[media:Slicer4minute_SoniaPujol_2013.pdf|Slicer4Minute tutorial]] is a brief introduction to the advanced 3D visualization capabilities of Slicer 4.0.
*Author: Sonia Pujol, Ph.D.
*Audience: First time users who want to discover Slicer in 4 minutes.
*Modules: Welcome to Slicer, Models
*Based on: 3D Slicer version 4.2
*The [[media:Slicer4minute.zip|Slicer4Minute dataset]] contains an MR scan of the brain and 3D reconstructions of the anatomy
|align="right"|
[[image:Slicer4minute-image.png|250px|right|Slicer4Minute tutorial]]
|}

==Slicer4 Data Loading and 3D Visualization ==
{|width="100%"
|
*The [[Media:3DDataLoadingandVisualization_Slicer43_SoniaPujol.pdf‎ | Data loading and 3D visualization]] course guides through the basics of loading and viewing volumes and 3D models in Slicer4 .
*Author: Sonia Pujol, Ph.D.
*Modules: Welcome to Slicer, Sample Data, Models.
*Audience: End-users
*Based on: 3D Slicer version 4.4
*The [[Media:3DVisualizationData.zip | 3DVisualization dataset]] contain an MR scan and a series of 3D models of the brain.
|align="right"|
[[Image:Slicer4DataLoading_tutorial.png|right|250px|]]
|}

=Tutorials for software developers=

== Slicer4 Programming Tutorial ==
{|width="100%"
|
*The [[Media: Slicer4_ProgrammingTutorial_SPujol-SPieper_slicer4.4.pdf‎| Hello Python Programming tutorial]] course guides through the integration of a python module in Slicer4.
*Author: Sonia Pujol, Ph.D., Steve Pieper, Ph.D.
*Audience: Developers
*Based on: 3D Slicer version 4.4
*The [[Media:HelloPython_Slicer4.4.zip| HelloPython dataset]] contains three Python files and an MR scan of the brain.
|align="right"|
[[Image:HelloPythonTutorial.png|right|250px|]]
|}

For additional Python scripts examples, please visit the [[Documentation/{{documentation/version}}/ScriptRepository|Script Repository page]]

==Developing and contributing extensions for 3D Slicer==
{|width="100%"
|
*The [http://goo.gl/IP4cdg Developing and contributing extensions for 3D Slicer tutorial ] is an introduction to the internals of 3D Slicer and the process of contributing a 3D Slicer extension.
*Authors: Andrey Fedorov, Jean-Christophe Fillion-Robin, Steve Pieper
*Audience: Developers
*Based on: 3D Slicer version 4.4
|align="right"|
[[Image:Contributing3DSlicerExtension.png|right|250px|]]
|}

=Specific functions=

==Slicer4 Diffusion Tensor Imaging Tutorial ==
{|width="100%"
|
*The [[Media:DiffusionMRIanalysis_Tutorial_SoniaPujol_2013.pdf | Diffusion Tensor Imaging Tutorial]] course guides through the basics of loading Diffusion Weighted images in Slicer, estimating tensors and generating fiber tracts.
*Author: Sonia Pujol, Ph.D.
*Audience: End-users and developers
*Modules: Data, Volumes, DWI to DTI Estimation, Diffusion Tensor Scalar Measurements, Editor, Markups,Tractography Label Map Seeding, Tractography Interactive Seeding
*Based on: 3D Slicer version 4.3
*The [[Media:DiffusionMRI_tutorialData.zip |DTI dataset]] contains an MR Diffusion Weighted Imaging scan of the brain.
|align="right"|
[[Image:Slicer4DTI Tutorial.png|right|250px|]]
|}

==Slicer4 Neurosurgical Planning Tutorial==
{|width="100%"
|
*The [[Media:WhiteMatterExplorationTutorial_SoniaPujol_2014.pdf | Neurosurgical Planning tutorial]] course guides through the generation of fiber tracts in the vicinity of a tumor.
*Author: Sonia Pujol, Ph.D., Ron Kikinis, M.D.
*Audience: End-users and developers
*Modules: Volumes, Editor, Tractography Label Map Seeding, Tractography Interactive Seeding
*Based on: 3D Slicer version 4.3
*The [[Media:WhiteMatterExplorationData.zip| White Matter Exploration datasets]] contains a Diffusion Weighted Imaging scan of brain tumor patient.
|align="right"|
[[Image:NeurosurgicalPlanningTutorial.png|right|250px|link=http://vimeo.com/67336069]]
|}

==Slicer4 3D Visualization of DICOM images for Radiology Applications==
{|width="100%"
|
*The [[Media:3DVisualizationDICOM_SoniaPujol.pdf‎ |3D Visualization of DICOM images for Radiology Applications]] course guides through 3D data loading and visualization of DICOM images for Radiology Applications in Slicer4.
*Author: Sonia Pujol, Ph.D., Kitt Shaffer, M.D., Ph.D., Ron Kikinis, M.D.
*Audience: Radiologists and users of Slicer who need a more comprehensive overview over Slicer4 visualization capabilities.
*Modules: DICOM, Volumes, Volume Rendering, Models.
*Based on: 3D Slicer version 4.3.1_06.29.2014
*The [[Media:3DVisualization_DICOM_images_part1.zip‎ | 3DVisualizationDICOM_part1]] and [[Media:3DVisualization_DICOM_images_part2.zip | 3DVisualizationDICOM_part2]] datasets contain a series of MR and CT scans, and 3D models of the brain, lung and liver.
|align="right"|
[[Image:Slicer4RSNA_2.png|right|250px|]]
|}

==Slicer4 Quantitative Imaging tutorial==
{|width="100%"
|
*The [http://wiki.na-mic.org/Wiki/images/8/87/QuantitativeImaging_SoniaPujol_RSNA2013.pdf Slicer4 Quantitative Imaging tutorial] guides through the use for Slicer for quantifying small volumetric changes in slow-growing tumors, and for calculating Standardized Uptake Value (SUV) from PET/CT data.
*Authors: Sonia Pujol, Ph.D., Katarzyna Macura, M.D., Ron Kikinis, M.D.
*Audience: Radiologists and users of Slicer who need a more comprehensive overview over Slicer4 quantitative imaging capabilities.
*Modules: Data, Volumes, Models, Change Tracker, PET Standard Uptake Value Computation
*Based on: 3D Slicer version 4.3.1
*The [[media:QuantitativeImaging.zip‎| Quantitative Imaging dataset]] contains a series of MR and PET/CT data.
|align="right"|
[[Image:Slicer4_QuantitativeImaging.png|right|250px|]]
|}

== Slicer4 IGT ==
{|width="100%"
|
*[http://www.slicerigt.org/wp/user-tutorial/ Slicer IGT tutorials]
*Authors: Tamas Ungi, M.D, Ph.D., Junichi Tokuda, Ph.D.
*Audience: End-users interested in using Slicer for real-time navigated procedures. E.g. navigated needle insertions or other minimally invasive medical procedures.
*Modules: SlicerIGT Extension
*Based on: Slicer4.3.1-2014.09.14
*Data: [https://onedrive.live.com/redir?resid=7230D4DEC6058018!2937&authkey=!AGQkSCZOwjVYXw8&ithint=folder%2cpptx Slicer-IGT datasets]
|align="right"|
[[Image:SlicetIGT.png|right|150px|]]
|}
== Slicer4 Non-rigid MR/CT registration for CT-guided liver ablation ==
{|width="100%"
|
*[[Media:NRR-CTgLiverAblation.pdf| Tutorial on non-rigid MR/CT registration for CT-guided liver ablation]]
*Authors: Soichiro Tani, M.D, Atsushi Yamada, Ph.D, Junichi Tokuda, Ph.D, Dominik S. Meier, Ph.D, and Nobuhiko Hata, Ph.D
*Audience: End-users interested in using Slicer to fuse pre- and intra-operative images for image-guided interventions.
*Modules: N4ITK MRI Bias Correction, Editor, General Registration (BRAINS)
*Based on: Slicer 4.4.0-2015-01-26
*Data: [[Media:NRR-CTgLiverAblation.zip|Pre- and Intra-operative image dataset]] contains pre-operative MR and intra-operative CT data.
|align="right"|
[[Image:NRR-CTgLiverAblation.png|right|250px|]]
|}

== Slicer4 3D Printing ==

{|width="100%"
|
* This ''Slicer 4.3 [https://www.youtube.com/watch?v=MKLWzD0PiIc 3D printing tutorial]'' shows how to prepare 3D Slicer data for 3D printing.
* Authors: Nabgha Farhat, MSc
* Audience: Users and developers interested in 3D printing
|align="right"|[[Image:3DPrinting_tutorial.png|250px]]
|}

== Other ==

Additional (non-curated) videos-based demonstrations using 3D Slicer are accessible on [http://www.youtube.com/results?search_query=3d+slicer&sm=3 You Tube].

=Summer 2014 Tutorial contest=

==Cardiac Agatston Tutorial==
{|width="100%"
|
*[http://wiki.na-mic.org/Wiki/index.php/File:TutorialContest_CardiacAgatstonScoring_2014.pdf Cardiac Agatston Scoring Tutorial]
*Authors: Jessica Forbes, Hans Johnson, University of Iowa
*Dataset: [http://wiki.na-mic.org/Wiki/index.php/File:CardiacAgatstonMeasures_TutorialContestSummer2014.zip Cardiac Agatston Scoring Tutorial Dataset]
|align="right"|
[[File:CardiacAgatstonMeasuresModuleScreenshot.jpg| 250px]]
|}

==CMR Toolkit LA workflow==
{|width="100%"
|
*[http://wiki.na-mic.org/Wiki/index.php/File:CMRToolkitLAWorkflow_TutorialContestSummer2014.pdf CMR Toolkit LA Workflow Tutorial]
*Authors: Salma Bengali, Josh Cates, University of Utah
*Dataset: [http://wiki.na-mic.org/Wiki/index.php/File:CMRToolkitLAWorkflowData_TutorialContestSummer2014.zip CMRToolkitLAWorkflow Dataset]
|align="right"|
[[Image:Utah_SummerContest2014_tutorial.png|300px]]
|}

=Summer 2013 Tutorial contest=

==Cardiac MRI Toolkit==
{|width="100%"
|
*[[Media:Cardiac MRI Toolkit Tutorial Summer2013.pdf|Cardiac MRI Toolkit]]
*Authors: Salma Bengali, Josh Cates, SCI, Utah
*Dataset: [[Media:Cardiac_MRI_Toolkit_Tutorial_Data.zip|Cardiac MRI Toolkit Tutorial Dataset]]
|align="right"|
[[Image:CMRToolkit_Tutorial_Image.png|250px]]
|}

==HelloCLI==
{|width="100%"
|
*[[Media:Hello_CLI_TutorialContestSummer2013.pdf|HelloCLI]]
*Authors: Nadya Shusharina, Greg Sharp, MGH, Boston
*Dataset: [[Media:Hello_CLI_TutorialContestSummer2013.zip‎|HelloCLI Dataset]]
|align="right"|
[[Image:Cli_icon.png|300px]]
|}

==SlicerRT==
{|width="100%"
|
*[[Media:SlicerRT_TutorialContestSummer2013.pdf|SlicerRT Tutorial]]
*Authors: Csaba Pinter, Andras Lasso (Queen's), Kevin Wang (PMH, Toronto)
*Dataset: [[Media:CsabaPinter-SlicerRtTutorial_Namic2013June.zip|SlicerRT Dataset]]
|align="right"|
[[Image:667px-SlicerRT_0.10_IsocenterShiftingEvaluation.png|250px]]
|}

==DTIPrep==
{|width="100%"
|
*[[Media:DTIPrep_TutorialContestSummer2013.pdf|DTIPrep]]
*Authors: Dave Welch, SINAPSE, IOWA
*Dataset: [[Media:DTIPrepData_TutorialContestSummer2013.zip|DTIPrep Dataset]]
|align="right"|
[[Image:DTIPrep-tutorial.png|250px]]
|}

= Summer 2012 Tutorial contest =

==Automatic Left Atrial Scar Segmenter ==
{|width="100%"
|
*[http://wiki.na-mic.org/Wiki/index.php/CARMA-LA-Scar_TutorialContestSummer2012 Automatic Left Atrial Scar Segmenter]
*Authors: Greg Gardner, Josh Cates, SCI, Utah
*Dataset: [http://wiki.na-mic.org/Wiki/index.php/File:CARMA-LA-Scar_TutorialContestSummer2012.zip CARMA-LA-Scar data]
|align="right"|
[[Image:Carma afib auto scar.png|250px]]
|}

==Qualitative and quantitative comparison of two RT dose distributions==
{|width="100%"
|
*[http://www.na-mic.org/Wiki/index.php/File:PlastimatchDose_TutorialContestSummer2012.pdf Qualitative and quantitative comparison of two RT dose distributions]
*Authors: James Shackleford, Nadya Shusharina, Greg Sharp, MGH
|align="right"|
[[Image:PlastimatchDose.png|250px]]
|}

==Dose accumulation for adaptive radiation therapy==
{|width="100%"
|
*[http://www.na-mic.org/Wiki/index.php/File:DoseAccumulationforAdaptiveRadiationTherapy_TutorialContestSummer2012.pdf Dose accumulation for adaptive radiation therapy]
*Authors: Kevin Wang, Csaba Pinter, Andras Lasso, PMH, Queen's
|align="right"|
[[Image:AdaptiveradiationTherapy.png|250px]]
|}

==WebGL Export==
{|width="100%"
|
*[http://www.na-mic.org/Wiki/index.php/File:WebGLExport_TutorialContestSummer2012.pdf WebdGLExport]
*Authors: Nicolas Rannou, Daniel Haehn, Children's Hospital
|align="right"|
[[Image:WebGLExport.png|250px]]
|}

==OpenIGTLink==
{|width="100%"
|
*[http://wiki.slicer.org/slicerWiki/images/f/f1/OpenIGTLinkTutorial_Slicer4.1.0_JunichiTokuda_Apr2012.pdf OpenIGTLink]
*Authors: Junichi Tokuda, BWH
|align="right"|
[[Image:OpenIGTLink.png|250px]]
|}

=Additional resources =
{|width="100%"
|
* This ''Slicer 4.1 [http://vimeo.com/41096643 webinar]'' presents the new features and improvements of the release, and a brief overview of work for the next release.
* Authors: Steve Pieper Ph.D.
* Audience: First time users and developers interested in Slicer 4.1 new features.
* Length: 0h20m
|align="right"|[[Image:Webinar-Slicer-4.1.png|250px]]
|}
 
----
 
{|width="100%"
|
*This ''Intro to Slicer 4.0 [http://vimeo.com/37671358 webinar]'' provides an introduction to 3DSlicer, and demonstrates core functionalities such as loading, visualizing and saving data. Basic processing tools, including manual registration, manual segmentation and tractography tools are also highlighted. This webinar is a general overview. For in depth information see the modules above and the documentation pages.
*Authors: Julien Finet, M.S., Steve Pieper, Ph.D., Jean-Christophe Fillion-Robin, M.S.
*Audience: First time users interested in a broad overview of Slicer’s features and tools.
*Length: 1h20m
|align="right"|[[Image:Webinar.png|250px]]
|}
 
----
 
{|width="100%"
|
*The ''[[Documentation/{{documentation/version}}/Registration/RegistrationLibrary|Slicer Registration Case Library]]'' provides many real-life example cases of using the Slicer registration tools. They include the dataset and step-by-step instructions to follow and try yourself.
:Author: Dominik Meier, Ph.D.
:Audience: users interested learning/applying Slicer image registration technology
|align="right"|[[Image:RegLib_table.png|250px|link=http://wiki.slicer.org/slicerWiki/index.php/Documentation/{{documentation/version}}/Registration/RegistrationLibrary]]
|}

= External Resources =

== Using the Editor ==

This set of tutorials about the use of slicer in paleontology is very well written and provides step-by-step instructions. Even though it covers slicer version 3.4, many of the concepts and techniques have applicability to the new version and to any 3D imaging field:

* [http://openpaleo.blogspot.com/2008/12/3d-slicer-tutorial.html Open Source Paleontologist: 3D Slicer: The Tutorial]
* [http://openpaleo.blogspot.com/2008/12/3d-slicer-tutorial-part-ii.html Open Source Paleontologist: 3D Slicer: The Tutorial Part II]
* [http://openpaleo.blogspot.com/2008/12/3d-slicer-tutorial-part-iii.html Open Source Paleontologist: 3D Slicer: The Tutorial Part III]
* [http://openpaleo.blogspot.com/2008/12/3d-slicer-tutorial-part-iv.html Open Source Paleontologist: 3D Slicer: The Tutorial Part IV]
* [http://openpaleo.blogspot.com/2009/03/3d-slicer-tutorial-part-v.html Open Source Paleontologist: 3D Slicer: The Tutorial Part V]
* [http://openpaleo.blogspot.com/2009/03/3d-slicer-tutorial-part-vi.html Open Source Paleontologist: 3D Slicer: The Tutorial Part VI]

== Team Contributions ==
See the collection of videos on the [http://vimeo.com/album/2363361 Kitware vimeo album].

== User Contributions ==
See the [[Documentation/{{documentation/version}}/Training/UserContributions|User Contributions Page]] for more content.

[http://www.youtube.com/results?search_query=3d+slicer&sm=3 YouTube videos about 3D Slicer]

Documentation/Nightly/Extensions/IGTWizard

2015-02-05T18:27:26Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Soichiro Tani (BWH, SUMS), Koichiro Murakami (SUMS), Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and buttons you created based on XML format as follows.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 
[3] [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions Extension List for Slicer Nightly version] 
[4] [http://www.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions Extension List for Slicer 4.4] 


{{documentation/{{documentation/version}}/module-section|Logo}}
{|
|[[File:IgtWizard.png|128x128px]]
|}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Extensions/IGTWizard

2015-02-05T18:27:09Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Soichiro Tani (BWH, SUMS), Koichiro Murakami(SUMS), Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and buttons you created based on XML format as follows.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 
[3] [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions Extension List for Slicer Nightly version] 
[4] [http://www.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions Extension List for Slicer 4.4] 


{{documentation/{{documentation/version}}/module-section|Logo}}
{|
|[[File:IgtWizard.png|128x128px]]
|}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/4.4/Extensions

2015-01-16T06:45:54Z

Ayamada: /* Cat 2 */

<noinclude>{{documentation/versioncheck}}</noinclude>
<noinclude>
__TOC__
</noinclude>= Extensions by Category =

==Cat 1==

==Cat 2==
*[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )
* [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)
* [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)
* [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Kevin Wang, Adam Rankin, Greg Sharp, Andras Lasso, Steve Pieper)
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]


** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/MeshToLabelMap|MeshToLabelMap]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)
* [[Documentation/{{documentation/version}}/Extensions/IntensitySegmenter|IntensitySegmenter]] (Francois Budin, Pengdong Xiao, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)
* [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/SpharmPdm|SPHARM-PDM]] (Beatriz Paniagua, Francois Budin, Martin Styner)
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/VolumeClip|VolumeClip]] (Andras Lasso, Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Luis G. Torres and Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/AutoPortPlacement|Auto Port Placement]] (Luis G. Torres, Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)
* [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]
** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]
** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]
* [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)
* [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/MultidimData|Multidimensional data]] (Andras Lasso, Matthew Holden, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)
* [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)
* [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Atsushi Yamada, Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)
** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]
** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]
* [[Documentation/{{documentation/version}}/Extensions/CurveMaker|CurveMaker]] (Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/CBC_3D_I2MConversion | CBC 3D I2MConversion]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov and Nikos Chrisochoides)
** [[Documentation/{{documentation/version}}/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]
** [[Documentation/{{documentation/version}}/Modules/MeshCompression|Mesh Compression]]
* [[Documentation/{{documentation/version}}/Extensions/PBNRR|Physics-Based Non-Rigid Registration (PBNRR)]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz and Nikos Chrisochoides)
* [[Documentation/{{documentation/version}}/Extensions/ResectionPlanner|ResectionVolume]] (Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM]] (Andrey Fedorov, Ethan Ulrich)
* [[Documentation/{{documentation/version}}/Extensions/CornerAnnotation|CornerAnnotation]] (Atsushi Yamada)
* [[Documentation/{{documentation/version}}/Extensions/Wasp|Watershed Annotation and Segmentation Plugin.]] (Thomas Lawson)
* [[Documentation/{{documentation/version}}/Extensions/SlicerPetSpectAnalysis|SlicerPetSpectAnalysis]] (Martín Bertran,Natalia Martínez, Guillermo Carbajal, Álvaro Gómez)
** [[Documentation/{{documentation/version}}/Modules/dPetBrainQuantification|dPetBrainQuantification]]
* [[Documentation/{{documentation/version}}/Extensions/IGTWizard|IGTWizard]] (Junichi Tokuda and Atsushi Yamada)

==Cat 3==
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)
* [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)
<noinclude>
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}
</noinclude>

Documentation/Nightly/Extensions

2015-01-16T06:45:13Z

Ayamada: /* Cat 2 */

<noinclude>{{documentation/versioncheck}}</noinclude>
<noinclude>
__TOC__
</noinclude>= Extensions by Category =

==Cat 1==

==Cat 2==
*[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )
* [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)
* [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)
* [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Kevin Wang, Adam Rankin, Greg Sharp, Andras Lasso, Steve Pieper)
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]


** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/MeshToLabelMap|MeshToLabelMap]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)
* [[Documentation/{{documentation/version}}/Extensions/IntensitySegmenter|IntensitySegmenter]] (Francois Budin, Pengdong Xiao, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)
* [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/SpharmPdm|SPHARM-PDM]] (Beatriz Paniagua, Francois Budin, Martin Styner)
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/VolumeClip|VolumeClip]] (Andras Lasso, Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Luis G. Torres and Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/AutoPortPlacement|Auto Port Placement]] (Luis G. Torres, Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)
* [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]
** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]
** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]
* [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)
* [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/MultidimData|Multidimensional data]] (Andras Lasso, Matthew Holden, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)
* [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)
* [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Atsushi Yamada, Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)
** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]
** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]
* [[Documentation/{{documentation/version}}/Extensions/CurveMaker|CurveMaker]] (Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/CBC_3D_I2MConversion | CBC 3D I2MConversion]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov and Nikos Chrisochoides)
** [[Documentation/{{documentation/version}}/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]
** [[Documentation/{{documentation/version}}/Modules/MeshCompression|Mesh Compression]]
* [[Documentation/{{documentation/version}}/Extensions/PBNRR|Physics-Based Non-Rigid Registration (PBNRR)]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz and Nikos Chrisochoides)
* [[Documentation/{{documentation/version}}/Extensions/ResectionPlanner|ResectionVolume]] (Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM]] (Andrey Fedorov, Ethan Ulrich)
* [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PETTumorSegmentation]] (Christian Bauer)
* [[Documentation/{{documentation/version}}/Extensions/CornerAnnotation|CornerAnnotation]] (Atsushi Yamada)
* [[Documentation/{{documentation/version}}/Extensions/Wasp|Watershed Annotation and Segmentation Plugin.]] (Thomas Lawson)
* [[Documentation/{{documentation/version}}/Extensions/SlicerPetSpectAnalysis|SlicerPetSpectAnalysis]] (Martín Bertran,Natalia Martínez, Guillermo Carbajal, Álvaro Gómez)
** [[Documentation/{{documentation/version}}/Modules/dPetBrainQuantification|dPetBrainQuantification]]
* [[Documentation/{{documentation/version}}/Extensions/IGTWizard|IGTWizard]] (Junichi Tokuda and Atsushi Yamada)

==Cat 3==
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)
* [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)
<noinclude>
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}
</noinclude>

Documentation/Nightly/Extensions/IGTWizard

2015-01-16T06:03:31Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and buttons you created based on XML format as follows.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 
[3] [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions Extension List for Slicer Nightly version] 
[4] [http://www.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions Extension List for Slicer 4.4] 


{{documentation/{{documentation/version}}/module-section|Logo}}
{|
|[[File:IgtWizard.png|128x128px]]
|}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

File:IgtWizard.png

2015-01-16T06:02:34Z

Ayamada:

Documentation/4.4/Extensions

2015-01-15T19:33:54Z

Ayamada: /* Cat 2 */

<noinclude>{{documentation/versioncheck}}</noinclude>
<noinclude>
__TOC__
</noinclude>= Extensions by Category =

==Cat 1==

==Cat 2==
*[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )
* [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)
* [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)
* [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Kevin Wang, Adam Rankin, Greg Sharp, Andras Lasso, Steve Pieper)
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]


** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/MeshToLabelMap|MeshToLabelMap]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)
* [[Documentation/{{documentation/version}}/Extensions/IntensitySegmenter|IntensitySegmenter]] (Francois Budin, Pengdong Xiao, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)
* [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/SpharmPdm|SPHARM-PDM]] (Beatriz Paniagua, Francois Budin, Martin Styner)
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/VolumeClip|VolumeClip]] (Andras Lasso, Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Luis G. Torres and Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/AutoPortPlacement|Auto Port Placement]] (Luis G. Torres, Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)
* [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]
** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]
** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]
* [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)
* [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/MultidimData|Multidimensional data]] (Andras Lasso, Matthew Holden, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)
* [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)
* [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Atsushi Yamada, Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)
** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]
** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]
* [[Documentation/{{documentation/version}}/Extensions/CurveMaker|CurveMaker]] (Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/CBC_3D_I2MConversion | CBC 3D I2MConversion]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov and Nikos Chrisochoides)
** [[Documentation/{{documentation/version}}/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]
** [[Documentation/{{documentation/version}}/Modules/MeshCompression|Mesh Compression]]
* [[Documentation/{{documentation/version}}/Extensions/PBNRR|Physics-Based Non-Rigid Registration (PBNRR)]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz and Nikos Chrisochoides)
* [[Documentation/{{documentation/version}}/Extensions/ResectionPlanner|ResectionVolume]] (Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM]] (Andrey Fedorov, Ethan Ulrich)
* [[Documentation/{{documentation/version}}/Extensions/CornerAnnotation|CornerAnnotation]] (Atsushi Yamada)
* [[Documentation/{{documentation/version}}/Extensions/Wasp|Watershed Annotation and Segmentation Plugin.]] (Thomas Lawson)
* [[Documentation/{{documentation/version}}/Extensions/SlicerPetSpectAnalysis|SlicerPetSpectAnalysis]] (Martín Bertran,Natalia Martínez, Guillermo Carbajal, Álvaro Gómez)
** [[Documentation/{{documentation/version}}/Modules/dPetBrainQuantification|dPetBrainQuantification]]

==Cat 3==
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)
* [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)
<noinclude>
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}
</noinclude>

Documentation/Nightly/Extensions

2015-01-15T19:33:23Z

Ayamada: /* Cat 2 */

<noinclude>{{documentation/versioncheck}}</noinclude>
<noinclude>
__TOC__
</noinclude>= Extensions by Category =

==Cat 1==

==Cat 2==
*[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )
* [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)
* [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)
* [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Kevin Wang, Adam Rankin, Greg Sharp, Andras Lasso, Steve Pieper)
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]


** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/MeshToLabelMap|MeshToLabelMap]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)
* [[Documentation/{{documentation/version}}/Extensions/IntensitySegmenter|IntensitySegmenter]] (Francois Budin, Pengdong Xiao, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)
* [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/SpharmPdm|SPHARM-PDM]] (Beatriz Paniagua, Francois Budin, Martin Styner)
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/VolumeClip|VolumeClip]] (Andras Lasso, Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Luis G. Torres and Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/AutoPortPlacement|Auto Port Placement]] (Luis G. Torres, Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)
* [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]
** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]
** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]
* [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)
* [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/MultidimData|Multidimensional data]] (Andras Lasso, Matthew Holden, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)
* [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)
* [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Atsushi Yamada, Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)
** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]
** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]
* [[Documentation/{{documentation/version}}/Extensions/CurveMaker|CurveMaker]] (Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/CBC_3D_I2MConversion | CBC 3D I2MConversion]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov and Nikos Chrisochoides)
** [[Documentation/{{documentation/version}}/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]
** [[Documentation/{{documentation/version}}/Modules/MeshCompression|Mesh Compression]]
* [[Documentation/{{documentation/version}}/Extensions/PBNRR|Physics-Based Non-Rigid Registration (PBNRR)]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz and Nikos Chrisochoides)
* [[Documentation/{{documentation/version}}/Extensions/ResectionPlanner|ResectionVolume]] (Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM]] (Andrey Fedorov, Ethan Ulrich)
* [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PETTumorSegmentation]] (Christian Bauer)
* [[Documentation/{{documentation/version}}/Extensions/CornerAnnotation|CornerAnnotation]] (Atsushi Yamada)
* [[Documentation/{{documentation/version}}/Extensions/Wasp|Watershed Annotation and Segmentation Plugin.]] (Thomas Lawson)
* [[Documentation/{{documentation/version}}/Extensions/SlicerPetSpectAnalysis|SlicerPetSpectAnalysis]] (Martín Bertran,Natalia Martínez, Guillermo Carbajal, Álvaro Gómez)
** [[Documentation/{{documentation/version}}/Modules/dPetBrainQuantification|dPetBrainQuantification]]

==Cat 3==
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)
* [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)
<noinclude>
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}
</noinclude>

Documentation/Nightly/Extensions/IGTWizard

2015-01-15T19:29:04Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and buttons you created based on XML format as follows.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 
[3] [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions Extension List for Slicer Nightly version] 
[4] [http://www.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions Extension List for Slicer 4.4] 


{{documentation/{{documentation/version}}/module-section|Logo}}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Extensions/IGTWizard

2015-01-15T19:28:24Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and buttons you created based on XML format as follows.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 
[3] [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions] Extension List for Slicer Nightly version] 
[4] [http://www.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions] Extension List for Slicer 4.4] 


{{documentation/{{documentation/version}}/module-section|Logo}}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Extensions/IGTWizard

2015-01-15T19:27:40Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and buttons you created based on XML format as follows.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 
[3] [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions] Extension List for Slicer Nightly version
[4] [http://www.slicer.org/slicerWiki/index.php/Documentation/4.4/Extensions] Extension List for Slicer 4.4


{{documentation/{{documentation/version}}/module-section|Logo}}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/4.4/Extensions/IGTWizard

2015-01-15T19:24:55Z

Ayamada: Redirected page to Documentation/Nightly/Extensions/IGTWizard

#REDIRECT [[Documentation/Nightly/Extensions/IGTWizard]]

Documentation/4.4/Extensions

2015-01-15T19:20:39Z

Ayamada: /* Cat 2 */

Documentation/Nightly/Extensions

2015-01-15T19:19:10Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>
<noinclude>
__TOC__
</noinclude>= Extensions by Category =

==Cat 1==

==Cat 2==
*[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )
* [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)
* [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)
* [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Kevin Wang, Adam Rankin, Greg Sharp, Andras Lasso, Steve Pieper)
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]


** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/MeshToLabelMap|MeshToLabelMap]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)
* [[Documentation/{{documentation/version}}/Extensions/IntensitySegmenter|IntensitySegmenter]] (Francois Budin, Pengdong Xiao, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)
* [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/SpharmPdm|SPHARM-PDM]] (Beatriz Paniagua, Francois Budin, Martin Styner)
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/VolumeClip|VolumeClip]] (Andras Lasso, Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Luis G. Torres and Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/AutoPortPlacement|Auto Port Placement]] (Luis G. Torres, Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)
* [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]
** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]
** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]
* [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)
* [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/MultidimData|Multidimensional data]] (Andras Lasso, Matthew Holden, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)
* [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)
* [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Atsushi Yamada, Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)
** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]
** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]
* [[Documentation/{{documentation/version}}/Extensions/CurveMaker|CurveMaker]] (Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/CBC_3D_I2MConversion | CBC 3D I2MConversion]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov and Nikos Chrisochoides)
** [[Documentation/{{documentation/version}}/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]
** [[Documentation/{{documentation/version}}/Modules/MeshCompression|Mesh Compression]]
* [[Documentation/{{documentation/version}}/Extensions/PBNRR|Physics-Based Non-Rigid Registration (PBNRR)]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz and Nikos Chrisochoides)
* [[Documentation/{{documentation/version}}/Extensions/ResectionPlanner|ResectionVolume]] (Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM]] (Andrey Fedorov, Ethan Ulrich)
* [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PETTumorSegmentation]] (Christian Bauer)
* [[Documentation/{{documentation/version}}/Extensions/CornerAnnotation|CornerAnnotation]] (Atsushi Yamada)
* [[Documentation/{{documentation/version}}/Extensions/Wasp|Watershed Annotation and Segmentation Plugin.]] (Thomas Lawson)
* [[Documentation/{{documentation/version}}/Extensions/SlicerPetSpectAnalysis|SlicerPetSpectAnalysis]] (Martín Bertran,Natalia Martínez, Guillermo Carbajal, Álvaro Gómez)
** [[Documentation/{{documentation/version}}/Modules/dPetBrainQuantification|dPetBrainQuantification]]
* [[Documentation/{{documentation/version}}/Extensions/IGTWizard|IGTWizard]] (Junichi Tokuda and Atsushi Yamada)

==Cat 3==
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)
* [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)
<noinclude>
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}
</noinclude>

Documentation/Nightly/Modules/IGTWizard

2015-01-15T19:16:18Z

Ayamada: Redirected page to Documentation/Nightly/Extensions/IGTWizard

#REDIRECT [[Documentation/Nightly/Extensions/IGTWizard]]

Documentation/Nightly/Extensions/IGTWizard

2015-01-15T19:13:20Z

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and buttons you created based on XML format as follows.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Logo}}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T19:11:35Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and buttons you created based on XML format as follows.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Logo}}


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T19:07:51Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and buttons you created based on XML format as follows.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T19:03:02Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and buttons you created based on XML format.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T19:02:14Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved file
** The file includes the wizard title and button format you created.
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:56:59Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved button format file
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:56:06Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved button format file
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:55:46Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS) and Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved button format file
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:54:53Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for managing clinical workflow. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved button format file
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:51:46Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for given clinical applications. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved button format file
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:50:42Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for given clinical applications. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.

*Saved button format
<items>
<title>Function list we developed</title>
# module name and label name
<item>CornerAnnotation,CornerAnnotatio</item>
<item>CurveMaker,CurveMaker</item>
<item>PercutaneousApproachAnalysis,PercutaneousApp</item>
</items>




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:47:16Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Authors: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for given clinical applications. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:46:48Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Author: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for given clinical applications. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:44:22Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Author: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Soichiro Tani (SUMS), Koichiro Murakami (SUMS), Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for given clinical applications. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.

{|
|[[File:IgtWizardGUIPanel4.png|360x240px]]
|}
* Wizard Panel
** The wizard panel has the "Title" and "Item List" you applied.




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

File:IgtWizardGUIPanel4.png

2015-01-15T18:41:52Z

Ayamada:

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:37:11Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Author: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Soichiro Tani (SUMS), Koichiro Murakami (SUMS), Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for given clinical applications. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}
* Title panel
**Wizard Title:
*** You can edit the title for the wizard panel.

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}
* Item List
** You can select existing modules and extensions for the wizard panel.




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:33:30Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Author: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Soichiro Tani (SUMS), Koichiro Murakami (SUMS), Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for given clinical applications. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
** Wizard Panel:
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:31:49Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Author: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Soichiro Tani (SUMS), Koichiro Murakami (SUMS), Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for given clinical applications. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button removes an item column in Item List.
*** "Apply" button reflects the Wizard Title and the Item List you created to the wizard panel.
*** "Reset" button resets the wizard panel.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:28:01Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Author: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Soichiro Tani (SUMS), Koichiro Murakami (SUMS), Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for given clinical applications. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
* Setup panel
** Item List:
*** "Load" button can read the button format you created before.
*** "Save" button can save the button format you created.
** Operation:
*** "+" button adds an item column in Item List.
*** "-" button reduce an item column in Item List.

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:18:25Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Author: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Soichiro Tani (SUMS), Koichiro Murakami (SUMS), Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for given clinical applications. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1a.png|360x240px]]
|}
*

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

File:IgtWizardGUIPanel1a.png

2015-01-15T18:18:02Z

Ayamada:

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:17:09Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Author: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Soichiro Tani (SUMS), Koichiro Murakami (SUMS), Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for given clinical applications. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
N/A


{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1.png|360x240px]]
|}
*

{|
|[[File:IgtWizardGUIPanel2.png|360x240px]]
|}

{|
|[[File:IgtWizardGUIPanel3.png|360x240px]]
|}




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}

Documentation/Nightly/Modules/IGTWizard

2015-01-15T18:14:34Z

Ayamada:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
This work is supported by NA-MIC, NCIGT, Slicer Community, Surgical Panning Lab in the Department of Radiology at Brigham and Women's Hospital (BWH) and Biomedical Innovation Center at Shiga University of Medical Science (SUMS) in Japan.


Author: Junichi Tokuda (BWH) and Atsushi Yamada (SUMS) 
Contributors: Soichiro Tani (SUMS), Koichiro Murakami (SUMS), Shigeyuki Naka (SUMS), Tohru Tani (SUMS) 
Contact: Junichi Tokuda, <email>tokuda@bwh.harvard.edu</email>, Atsushi Yamada, <email>ayamada@belle.shiga-med.ac.jp</email> 
License: [http://www.slicer.org/pages/LicenseText Slicer License]

{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:SumsLogo2014.jpg|Shiga University of Medical Science in Japan
|{{collaborator|logo|namic}}|NA-MIC
|{{collaborator|logo|ncigt}}|NCIGT
}}
{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
{|
|[[File:IgtWizardGUISample3.png|800x600px]]
|}

The idea behind this module is to rapidly prototype a module for a specific clinical workflow. Since Slicer 2.x there have been several efforts to create modules that provides all functionalities required for a given clinical application with an integrated GUI. The issue of such approach is that there are many duplicated codes among the modules; the developers have to copy the entire module and modify just a few parts of it even if the new clinical applications share the large part of workflow with the existing modules.

Instead of implementing all features in a module, this module only binds the existing modules that are required for given clinical applications, and allows the users to go through those modules by simply clicking the navigation buttons. This module can create the navigation buttons, save the button format as a XML format file and reuse the button format by loading it.



{{documentation/{{documentation/version}}/module-section|Use Cases}}
The IGTWizard module is an effective tool to use existing modules and extensions without complicated mouse operations for given clinical applications. The module can create the wizard panel that has buttons to jump to the modules you listed, as well as "back" and "next" button to switch to the previous/next module in the clinical workflow.


{{documentation/{{documentation/version}}/module-section|Tutorials}}
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{{documentation/{{documentation/version}}/module-section|Panels and their use}}
{|
|[[File:IgtWizardGUIPanel1.png|400x200px]]
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{|
|[[File:IgtWizardGUIPanel2.png|400x200px]]
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{|
|[[File:IgtWizardGUIPanel3.png|400x200px]]
|}




{{documentation/{{documentation/version}}/module-section|Similar Modules}}
N/A


{{documentation/{{documentation/version}}/module-section|References}}
[1] [http://www.na-mic.org/Wiki/index.php/2013_Project_Week:AbdominalNavigationModule Abdominal Navigation Module in 2013 Winter Project Week] 
[2] [https://github.com/tokjun/IGTWizard Github source code repository (https://github.com/tokjun/IGTWizard)] 


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


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File:IgtWizardGUIPanel3.png

2015-01-15T18:13:19Z

Ayamada:

File:IgtWizardGUIPanel2.png

2015-01-15T18:13:05Z

Ayamada: