Slicer Wiki - User contributions [en]

Documentation/Nightly/Modules/Featurelet-Registration

2015-09-23T13:58:30Z

AndreasRenner:

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Extension: [[Documentation/{{documentation/version}}/Extensions/Slicer-Featurelets|Slicer-Featurelets]] 
Acknowledgments:
The extension was developed as a Master Thesis at the general hospital Vienna under supervision of Univ.-Prof. Dietmar Georg and Hugo Furtado. 
The idea of the algorithm used for the module Featurelet-Registration is based on Söhn, M. et al. (2008). The Featurelet-Registration module is an implementation of the algorithm developed by Fabri, D. et al. (2014). 
Author: Andreas Renner (Vienna UT) 
Contributor1: Hugo Furtado (Medical University Vienna) 
Contact: Andreas Renner, <email>AndreasRenner@gmx.at</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:ZMPBMT.png|Center for Medical Physics & BME of the general hospital of Vienna
|Image:Radonc.png|CDL for Medical Radiation Research for Radiation Oncology
|Image:MUW.png|Medical University of Vienna
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
The module "Featurelet-Registration" provides a featurelet-based, piecewise rigid, deformable image registration method. The so called "featurelets" are equally sized rectangular subvolumes of the moving image which are rigidly registered to rectangular search regions on the fixed image. The output is a deformed image and a deformation field. 
 
The basic idea of the algorithm is from Söhn et al. (2008). Daniella Fabri, a former PhD Student at the general hospital of Vienna picked up this idea and developed an featurelet-based registration method which was intended to be used for image registration in the pelvic region. The algorithm was written in C++, but unfortunately without any GUI. Thus, it was not easy to use, especially for people without any programming skills. 
The source code of Daniella Fabri was used to make a 3D-Slicer extension for Linux out of it. The extension consists of a single loadable module named “Featurelet-Registration”.


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
|[[Image:ExampleTransform.jpg|thumb|600px|Example Registration: The axial, sagital and coronal view show the warped image of the registration
of a maximum exhale to a maximum inhale state CT of a thorax. The corresponding output deformation field is visualized using the [[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]] module.]]
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

[[Image:ModuleWidgetFeatureletRegistration.png|thumb|300px|Module UI]]
* '''Help & Acknowledgment''':
** The Help-section provides the user with an exemplary workflow for image registration using the module Featurelet-Registration and information about other Slicer modules for pre- and post-processing of images and the registration output.
** The Acknowledgment-section provides information about the basic idea used for the module and its contributors.

* '''Input''': In the Input-section the user can select the fixed and moving image intended to use for registration. Both images can be visualized immediately using the particular “Show”-button. In addition, the user can define fixed points in the image. A featurelet containing such a point is non moving.

* '''Parameters''': In the Parameter-section both feturelet and search region size can be defined. Optionally a different size in the z-direction can be set for the case of large inter-slice spacings of an image. Regarding the registration process itself the user can select the type of interpolator (linear or nearest neighbor) and the metric used for measuring the voxel-based similarity (mutual information or normalized cross correlation). As advanced parameters optimizer settings can be changed and the registration process can be executed in debug mode. In this debug mode additional information about the registration process and its progress is shown in the terminal.

* '''Output''': In the Output-section the user has to define the volume used for the deformed image as well as the one for the deformation field. By hitting the “Run Registration”-button the registration process starts and the progress is shown in the progress-bar below the button.

To facilitate usability several tooltips provide additional information for the user about the item being hovered over.


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}
* Söhn et al., “Model-independent, multimodality deformable image registration by local matching of anatomical features and minimization of elastic energy”, Medical Physics 35, 866–878, 2008.


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Registration]]

Documentation/4.4/Modules/Featurelet-Registration

2015-09-23T13:57:58Z

AndreasRenner:

{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Extension: [[Documentation/{{documentation/version}}/Extensions/Slicer-Featurelets|Slicer-Featurelets]] 
Acknowledgments:
The extension was developed as a Master Thesis at the general hospital Vienna under supervision of Univ.-Prof. Dietmar Georg and Hugo Furtado. 
The idea of the algorithm used for the module Featurelet-Registration is based on Söhn, M. et al. (2008). The Featurelet-Registration module is an implementation of the algorithm developed by Fabri, D. et al. (2014). 
Author: Andreas Renner (Vienna UT) 
Contributor1: Hugo Furtado (Medical University Vienna) 
Contact: Andreas Renner, <email>AndreasRenner@gmx.at</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:ZMPBMT.png|Center for Medical Physics & BME of the general hospital of Vienna
|Image:Radonc.png|CDL for Medical Radiation Research for Radiation Oncology
|Image:MUW.png|Medical University of Vienna
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
The module "Featurelet-Registration" provides a featurelet-based, piecewise rigid, deformable image registration method. The so called "featurelets" are equally sized rectangular subvolumes of the moving image which are rigidly registered to rectangular search regions on the fixed image. The output is a deformed image and a deformation field. 
 
The basic idea of the algorithm is from Söhn et al. (2008). Daniella Fabri, a former PhD Student at the general hospital of Vienna picked up this idea and developed an featurelet-based registration method which was intended to be used for image registration in the pelvic region. The algorithm was written in C++, but unfortunately without any GUI. Thus, it was not easy to use, especially for people without any programming skills. 
The source code of Daniella Fabri was used to make a 3D-Slicer extension for Linux out of it. The extension consists of a single loadable module named “Featurelet-Registration”.


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
|[[Image:ExampleTransform.jpg|thumb|600px|Example Registration: The axial, sagital and coronal view show the warped image of the registration
of a maximum exhale to a maximum inhale state CT of a thorax. The corresponding output deformation field is visualized using the [[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]] module.]]
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

[[Image:ModuleWidgetFeatureletRegistration.png|thumb|300px|Module UI]]
* '''Help & Acknowledgment''':
** The Help-section provides the user with an exemplary workflow for image registration using the module Featurelet-Registration and information about other Slicer modules for pre- and post-processing of images and the registration output.
** The Acknowledgment-section provides information about the basic idea used for the module and its contributors.

* '''Input''': In the Input-section the user can select the fixed and moving image intended to use for registration. Both images can be visualized immediately using the particular “Show”-button. In addition, the user can define fixed points in the image. A featurelet containing such a point is non moving.

* '''Parameters''': In the Parameter-section both feturelet and search region size can be defined. Optionally a different size in the z-direction can be set for the case of large inter-slice spacings of an image. Regarding the registration process itself the user can select the type of interpolator (linear or nearest neighbor) and the metric used for measuring the voxel-based similarity (mutual information or normalized cross correlation). As advanced parameters optimizer settings can be changed and the registration process can be executed in debug mode. In this debug mode additional information about the registration process and its progress is shown in the terminal.

* '''Output''': In the Output-section the user has to define the volume used for the deformed image as well as the one for the deformation field. By hitting the “Run Registration”-button the registration process starts and the progress is shown in the progress-bar below the button.

To facilitate usability several tooltips provide additional information for the user about the item being hovered over.


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}
* Söhn et al., “Model-independent, multimodality deformable image registration by local matching of anatomical features and minimization of elastic energy”, Medical Physics 35, 866–878, 2008.


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Registration]]

Documentation/Nightly/Modules/Featurelet-Registration

2015-09-21T09:46:32Z

AndreasRenner: Created page with '<noinclude>{{documentation/versioncheck}}</noinclude>  {{documentation/{{documentation/version}}/module-header}} <!-- -----------------------…'

<noinclude>{{documentation/versioncheck}}</noinclude>

{{documentation/{{documentation/version}}/module-header}}



{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Extension: [[Documentation/{{documentation/version}}/Extensions/Slicer-Featurelets|Slicer-Featurelets]] 
Acknowledgments:
The extension was developed as a Master Thesis at the general hospital Vienna under supervision of Univ.-Prof. Dietmar Georg and Hugo Furtado. 
The idea of the algorithm used for the module Featurelet-Registration is based on Soehn, M. et al. (2008). The Featurelet-Registration module is an implementation of the algorithm developed by Fabri, D. et al. (2014). 
Author: Andreas Renner (Vienna UT) 
Contributor1: Hugo Furtado (Medical University Vienna) 
Contact: Andreas Renner, <email>AndreasRenner@gmx.at</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:ZMPBMT.png|Center for Medical Physics & BME of the general hospital of Vienna
|Image:Radonc.png|CDL for Medical Radiation Research for Radiation Oncology
|Image:MUW.png|Medical University of Vienna
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
The module "Featurelet-Registration" provides a featurelet-based, piecewise rigid, deformable image registration method. The so called "featurelets" are equally sized rectangular subvolumes of the moving image which are rigidly registered to rectangular search regions on the fixed image. The output is a deformed image and a deformation field. 
 
The basic idea of the algorithm is from Söhn et al. (2008). Daniella Fabri, a former PhD Student at the general hospital of Vienna picked up this idea and developed an featurelet-based registration method which was intended to be used for image registration in the pelvic region. The algorithm was written in C++, but unfortunately without any GUI. Thus, it was not easy to use, especially for people without any programming skills. 
The source code of Daniella Fabri was used to make a 3D-Slicer extension for Linux out of it. The extension consists of a single loadable module named “Featurelet-Registration”.


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
|[[Image:ExampleTransform.jpg|thumb|600px|Example Registration: The axial, sagital and coronal view show the warped image of the registration
of a maximum exhale to a maximum inhale state CT of a thorax. The corresponding output deformation field is visualized using the [[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]] module.]]
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

[[Image:ModuleWidgetFeatureletRegistration.png|thumb|300px|Module UI]]
* '''Help & Acknowledgment''':
** The Help-section provides the user with an exemplary workflow for image registration using the module Featurelet-Registration and information about other Slicer modules for pre- and post-processing of images and the registration output.
** The Acknowledgment-section provides information about the basic idea used for the module and its contributors.

* '''Input''': In the Input-section the user can select the fixed and moving image intended to use for registration. Both images can be visualized immediately using the particular “Show”-button. In addition, the user can define fixed points in the image. A featurelet containing such a point is non moving.

* '''Parameters''': In the Parameter-section both feturelet and search region size can be defined. Optionally a different size in the z-direction can be set for the case of large inter-slice spacings of an image. Regarding the registration process itself the user can select the type of interpolator (linear or nearest neighbor) and the metric used for measuring the voxel-based similarity (mutual information or normalized cross correlation). As advanced parameters optimizer settings can be changed and the registration process can be executed in debug mode. In this debug mode additional information about the registration process and its progress is shown in the terminal.

* '''Output''': In the Output-section the user has to define the volume used for the deformed image as well as the one for the deformation field. By hitting the “Run Registration”-button the registration process starts and the progress is shown in the progress-bar below the button.

To facilitate usability several tooltips provide additional information for the user about the item being hovered over.


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}
* Söhn et al., “Model-independent, multimodality deformable image registration by local matching of anatomical features and minimization of elastic energy”, Medical Physics 35, 866–878, 2008.


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Registration]]

Documentation/Nightly/Extensions/Slicer-Featurelets

2015-09-21T09:44:23Z

AndreasRenner: Redirected page to Documentation/Nightly/Modules/Featurelet-Registration

#REDIRECT [[Documentation/Nightly/Modules/Featurelet-Registration]]

Documentation/Nightly/Extensions

2015-09-21T09:42:33Z

AndreasRenner: Added an extension entry for Slicer-Featurelets.

<noinclude>{{documentation/versioncheck}}</noinclude>
<noinclude>
__TOC__
</noinclude>= Extensions by Category =

==Cat 1==

==Cat 2==
*[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )
* [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)
* [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)
* [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Kevin Wang, Adam Rankin, Greg Sharp, Andras Lasso, Steve Pieper)
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]


** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)
** [[Documentation/{{documentation/version}}/Extensions/PathRecorder|Path Recorder]] (Alireza Mehrtash)
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTI-Reg|DTI-Reg]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/MeshToLabelMap|MeshToLabelMap]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)
* [[Documentation/{{documentation/version}}/Extensions/IntensitySegmenter|IntensitySegmenter]] (Francois Budin, Pengdong Xiao, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)
* [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/SpharmPdm|SPHARM-PDM]] (Beatriz Paniagua, Francois Budin, Martin Styner)
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/VolumeClip|VolumeClip]] (Andras Lasso, Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Luis G. Torres and Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/AutoPortPlacement|Auto Port Placement]] (Luis G. Torres, Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)
* [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]
** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]
** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]
* [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)
* [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/Sequences|Sequences]] - formerly Multidimensional data (Andras Lasso, Matthew Holden, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)
* [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)
* [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Atsushi Yamada, Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)
** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]
** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]
* [[Documentation/{{documentation/version}}/Extensions/CurveMaker|CurveMaker]] (Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/CBC_3D_I2MConversion | CBC 3D I2MConversion]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov and Nikos Chrisochoides)
** [[Documentation/{{documentation/version}}/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]
** [[Documentation/{{documentation/version}}/Modules/MeshCompression|Mesh Compression]]
* [[Documentation/{{documentation/version}}/Extensions/PBNRR|Physics-Based Non-Rigid Registration (PBNRR)]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz and Nikos Chrisochoides)
* [[Documentation/{{documentation/version}}/Extensions/ResectionPlanner|ResectionVolume]] (Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM]] (Andrey Fedorov, Ethan Ulrich)
* [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PETTumorSegmentation]] (Christian Bauer)
* [[Documentation/{{documentation/version}}/Extensions/PET-IndiC|PET-IndiC]] (Ethan Ulrich)
* [[Documentation/{{documentation/version}}/Extensions/CornerAnnotation|CornerAnnotation]] (Atsushi Yamada)
* [[Documentation/{{documentation/version}}/Extensions/Wasp|Watershed Annotation and Segmentation Plugin.]] (Thomas Lawson)
* [[Documentation/{{documentation/version}}/Extensions/SlicerPetSpectAnalysis|SlicerPetSpectAnalysis]] (Martín Bertran,Natalia Martínez, Guillermo Carbajal, Álvaro Gómez)
** [[Documentation/{{documentation/version}}/Modules/dPetBrainQuantification|dPetBrainQuantification]]
* [[Documentation/{{documentation/version}}/Extensions/IGTWizard|IGTWizard]] (Junichi Tokuda and Atsushi Yamada)
* [[Documentation/{{documentation/version}}/Extensions/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Modules/T1_Mapping|T1_Mapping]] (Xiao Da, Artem Mamonov, Jayashree Kalpathy-Cramer and Andriy Fedorov)
* [[Documentation/{{documentation/version}}/Modules/T1_Mapping_CPP|T1_Mapping_CPP]] (Xiao Da, Yangming Ou, Andriy Fedorov and Jayashree Kalpathy-Cramer)
* [[Documentation/{{documentation/version}}/Extensions/PickAndPaint|PickAndPaint]] (Lucie Macron)
* [[Documentation/{{documentation/version}}/Extensions/EasyClip|EasyClip]] (Julia Lopinto)
* [[Documentation/{{documentation/version}}/Extensions/MeshStatistics|MeshStatistics]] (Lucie Macron)
* [[Documentation/{{documentation/version}}/Extensions/AnglePlanes|AnglePlanes]] (Julia Lopinto)
* [[Documentation/{{documentation/version}}/Extensions/Q3DC|Q3DC]] (Lucie Macron)
* [[Documentation/{{documentation/version}}/Extensions/SlicerHeart|SlicerHeart]] (Andras Lasso, Steve Pieper, Adam Rankin, Matthew Jolley)
* [[Documentation/{{documentation/version}}/Extensions/Slicer-Featurelets|Slicer-Featurelets]] (Andreas Renner)

==Cat 3==
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)
* [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)
<noinclude>
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}
</noinclude>

Documentation/4.4/Modules/Featurelet-Registration

2015-09-20T17:31:09Z

AndreasRenner: Created page with ' {{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}} {{documentation/{{documentation/version}}/modul…'

{{documentation/{{documentation/version}}/module-section|Introduction and Acknowledgements}}
{{documentation/{{documentation/version}}/module-introduction-start|{{documentation/modulename}}}}
{{documentation/{{documentation/version}}/module-introduction-row}}
Extension: [[Documentation/{{documentation/version}}/Extensions/Slicer-Featurelets|Slicer-Featurelets]] 
Acknowledgments:
The extension was developed as a Master Thesis at the general hospital Vienna under supervision of Univ.-Prof. Dietmar Georg and Hugo Furtado. 
The idea of the algorithm used for the module Featurelet-Registration is based on Soehn, M. et al. (2008). The Featurelet-Registration module is an implementation of the algorithm developed by Fabri, D. et al. (2014). 
Author: Andreas Renner (Vienna UT) 
Contributor1: Hugo Furtado (Medical University Vienna) 
Contact: Andreas Renner, <email>AndreasRenner@gmx.at</email> 
{{documentation/{{documentation/version}}/module-introduction-row}}
{{documentation/{{documentation/version}}/module-introduction-logo-gallery
|Image:ZMPBMT.png|Center for Medical Physics & BME of the general hospital of Vienna
|Image:Radonc.png|CDL for Medical Radiation Research for Radiation Oncology
|Image:MUW.png|Medical University of Vienna
}}

{{documentation/{{documentation/version}}/module-introduction-end}}


{{documentation/{{documentation/version}}/module-section|Module Description}}
The module "Featurelet-Registration" provides a featurelet-based, piecewise rigid, deformable image registration method. The so called "featurelets" are equally sized rectangular subvolumes of the moving image which are rigidly registered to rectangular search regions on the fixed image. The output is a deformed image and a deformation field. 
 
The basic idea of the algorithm is from Söhn et al. (2008). Daniella Fabri, a former PhD Student at the general hospital of Vienna picked up this idea and developed an featurelet-based registration method which was intended to be used for image registration in the pelvic region. The algorithm was written in C++, but unfortunately without any GUI. Thus, it was not easy to use, especially for people without any programming skills. 
The source code of Daniella Fabri was used to make a 3D-Slicer extension for Linux out of it. The extension consists of a single loadable module named “Featurelet-Registration”.


{{documentation/{{documentation/version}}/module-section|Use Cases}}
{|
|[[Image:ExampleTransform.jpg|thumb|600px|Example Registration: The axial, sagital and coronal view show the warped image of the registration
of a maximum exhale to a maximum inhale state CT of a thorax. The corresponding output deformation field is visualized using the [[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]] module.]]
|}


{{documentation/{{documentation/version}}/module-section|Tutorials}}


{{documentation/{{documentation/version}}/module-section|Panels and their use}}

[[Image:ModuleWidgetFeatureletRegistration.png|thumb|300px|Module UI]]
* '''Help & Acknowledgment''':
** The Help-section provides the user with an exemplary workflow for image registration using the module Featurelet-Registration and information about other Slicer modules for pre- and post-processing of images and the registration output.
** The Acknowledgment-section provides information about the basic idea used for the module and its contributors.

* '''Input''': In the Input-section the user can select the fixed and moving image intended to use for registration. Both images can be visualized immediately using the particular “Show”-button. In addition, the user can define fixed points in the image. A featurelet containing such a point is non moving.

* '''Parameters''': In the Parameter-section both feturelet and search region size can be defined. Optionally a different size in the z-direction can be set for the case of large inter-slice spacings of an image. Regarding the registration process itself the user can select the type of interpolator (linear or nearest neighbor) and the metric used for measuring the voxel-based similarity (mutual information or normalized cross correlation). As advanced parameters optimizer settings can be changed and the registration process can be executed in debug mode. In this debug mode additional information about the registration process and its progress is shown in the terminal.

* '''Output''': In the Output-section the user has to define the volume used for the deformed image as well as the one for the deformation field. By hitting the “Run Registration”-button the registration process starts and the progress is shown in the progress-bar below the button.

To facilitate usability several tooltips provide additional information for the user about the item being hovered over.


{{documentation/{{documentation/version}}/module-section|Similar Modules}}


{{documentation/{{documentation/version}}/module-section|References}}
* Söhn et al., “Model-independent, multimodality deformable image registration by local matching of anatomical features and minimization of elastic energy”, Medical Physics 35, 866–878, 2008.


{{documentation/{{documentation/version}}/module-section|Information for Developers}}
{{documentation/{{documentation/version}}/module-developerinfo}}


{{documentation/{{documentation/version}}/module-footer}}
[[Category:Documentation/{{documentation/version}}/Modules/Registration]]

Documentation/4.4/Extensions/Slicer-Featurelets

2015-09-20T16:24:56Z

AndreasRenner: Redirected page to Documentation/4.4/Modules/Featurelet-Registration

#REDIRECT [[Documentation/4.4/Modules/Featurelet-Registration]]

Documentation/4.4/Extensions

2015-09-17T09:50:08Z

AndreasRenner: Added an extension entry for Slicer-Featurelets.

<noinclude>{{documentation/versioncheck}}</noinclude>
<noinclude>
__TOC__
</noinclude>= Extensions by Category =

==Cat 1==

==Cat 2==
*[[Documentation/{{documentation/version}}/Extensions/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )
* [[Documentation/{{documentation/version}}/Extensions/SurfaceReconstruction|SurfaceReconstruction]] (Chenxi-Zhang David-Doria Arnaud-Gelas Michael-Kazhdan Matthew-Bolitho Hugues-Hoppe Jean-Christophe Fillion-Robin )
* [[Documentation/{{documentation/version}}/Extensions/SkullStripper|SkullStripper]] (Xiaodong Tao)
* [[Documentation/{{documentation/version}}/Extensions/MABMIS|MABMIS]] (Xiaofeng Liu)
* [[Documentation/{{documentation/version}}/Extensions/SwissSkullStripper|SwissSkullStripper]] (Bill Lorensen)
* [[Documentation/{{documentation/version}}/Extensions/CARMA|Cardiac MRI Toolkit]] (Alan Morris, Salma Bengali)[[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/PkModeling|PkModeling]] (Emma Zhu, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/FacetedVisualizer|FacetedVisualizer]] (Harini Veeraraghavan, Jim Miller)
* [[Documentation/{{documentation/version}}/Extensions/Reporting|Reporting]] (Andrey Fedorov, Nicole Aucoin, Steve Pieper) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/TCIABrowser|TCIA Browser]] (Alireza Mehrtash, Andrey Fedorov) (work in progress)
* [[Documentation/{{documentation/version}}/Extensions/SlicerRT|SlicerRT]] (Csaba Pinter, Kevin Wang, Adam Rankin, Greg Sharp, Andras Lasso, Steve Pieper)
** [[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
** [[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]
** [[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
** [[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
** [[Documentation/{{documentation/version}}/Modules/DoseAccumulation|Dose accumulation]]
** [[Documentation/{{documentation/version}}/Modules/DoseComparison|Dose comparison]]
** [[Documentation/{{documentation/version}}/Modules/Isodose|Isodose line and surface display]]
** [[Documentation/{{documentation/version}}/Modules/ContourComparison|Contour comparison]]
** [[Documentation/{{documentation/version}}/Modules/ContourMorphology|Contour morphology]]


** Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
*** [[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]]
*** [[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]]
*** [[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] [[image:UnderConstruction.png|tumb|10px]]
* [[Documentation/{{documentation/version}}/Extensions/SlicerIGT|SlicerIGT]] (Tamas Ungi, Adam Rankin, Andras Lasso, Junichi Tokuda, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Modules/CollectFiducials|CollectFiducials]] (Tamas Ungi)
** [[Documentation/{{documentation/version}}/Modules/CreateModels|CreateModels]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]] (Tamas Ungi, Andras Lasso)
** [[Documentation/{{documentation/version}}/Modules/UltrasoundSnapshots|UltrasoundSnapshots]] (Tamas Ungi, Franklin King)
** [[Documentation/{{documentation/version}}/Extensions/VolumeResliceDriver|VolumeResliceDriver]] (Junichi Tokuda, Tamas Ungi, Laurent Chauvin)
** [[Documentation/{{documentation/version}}/Extensions/PathExplorer|PathExplorer]] (Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/MatlabBridge|Matlab Bridge]] (Andras Lasso, Jean-Christophe Fillion-Robin, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/iGyne|iGyne]] (Xiaojun Chen and iGyne Team)
* [[Documentation/{{documentation/version}}/Extensions/LongitudinalPETCT|LongitudinalPETCT]] (Paul Mercea, Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/DTIProcess|DTIProcess]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasFiberAnalyzer|DTIAtlasFiberAnalyzer]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/FiberViewerLight|FiberViewerLight]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIPrep|DTIPrep]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/MeshToLabelMap|MeshToLabelMap]] (Francois Budin)
* [[Documentation/{{documentation/version}}/Extensions/DTIAtlasBuilder|DTIAtlasBuilder]] (Adrien Kaiser)
* [[Documentation/{{documentation/version}}/Extensions/IntensitySegmenter|IntensitySegmenter]] (Francois Budin, Pengdong Xiao, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/ShapePopulationViewer|ShapePopulationViewer]] (Alexis Girault)
* [[Documentation/{{documentation/version}}/Extensions/ModelToModelDistance|ModelToModelDistance]] (Francois Budin, Juliette Pera, Beatriz Paniagua)
* [[Documentation/{{documentation/version}}/Extensions/SpharmPdm|SPHARM-PDM]] (Beatriz Paniagua, Francois Budin, Martin Styner)
* [[Documentation/{{documentation/version}}/Extensions/TubeTK|TubeTK]] (Stephen Aylward, Jean-Christophe Fillion-Robin, Christopher Mullins, Michael Jeulin-L, Matthew McCormick)
* [[Documentation/{{documentation/version}}/Extensions/UKFTractography|UKFTractography]] (Ryan Eckbo, Yogesh Rathi)
* [[Documentation/{{documentation/version}}/Extensions/TrackerStabilizer|TrackerStabilizer]] (Laurent Chauvin, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/ChangeTracker|ChangeTracker]] (Andrey Fedorov)
* [[Documentation/{{documentation/version}}/Extensions/SobolevSegmenter|SobolevSegmenter]] (Arie Nakhmani)
* [[Documentation/{{documentation/version}}/Extensions/QuickTools|QuickTools]] (Julien Finet)
** [[Documentation/{{documentation/version}}/Modules/ImageMaker|Image Maker]]
* [[Documentation/{{documentation/version}}/Extensions/XNATSlicer|XNATSlicer]]
* [[Documentation/{{documentation/version}}/Extensions/ErodeDilateLabel|ErodeDilateLabel]] (Junichi)
* [[Documentation/{{documentation/version}}/Extensions/ThingiverseBrowser|ThingiverseBrowser]] (Nigel Goh)
* [[Documentation/{{documentation/version}}/Extensions/VirtualFractureReconstruction|Virtual Fracture Reconstruction]] (Karl Fritscher, Peter Karasev)
* [[Documentation/{{documentation/version}}/Extensions/AirwaySegmentation|AirwaySegmentation]] (Pietro Nardelli)
* [[Documentation/{{documentation/version}}/Extensions/ModelClip|ModelClip]] (Jun Lin, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/VolumeClip|VolumeClip]] (Andras Lasso, Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/SurfaceMirror|SurfaceMirror]] (Jiaxi Luo, Ruqing Ye, Xiaojun Chen)
* [[Documentation/{{documentation/version}}/Extensions/Scoliosis|Scoliosis]] (Franklin King, Tamas Ungi)
**[[Documentation/{{documentation/version}}/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/PortPlacement|Port Placement]] (Luis G. Torres and Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/AutoPortPlacement|Auto Port Placement]] (Luis G. Torres, Andinet Enquobahrie)
* [[Documentation/{{documentation/version}}/Extensions/PlusRemote|Plus Remote]] (Franklin King, Tamas Ungi)
* [[Documentation/{{documentation/version}}/Extensions/TransformVisualizer|Transform Visualizer]] (Franklin King, Andras Lasso, Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/WindowLevelEffect|WindowLevelEffect]] (Andrey Fedorov, Steve Pieper)
* [[Documentation/{{documentation/version}}/Extensions/PerkTutor|PerkTutor]] (Tamas Ungi, Matthew Holden)
** [[Documentation/{{documentation/version}}/Modules/PerkEvaluator|PerkEvaluator]]
** [[Documentation/{{documentation/version}}/Modules/TransformRecorder|TransformRecorder]]
** [[Documentation/{{documentation/version}}/Modules/WorkflowSegmentation|WorkflowSegmentation]]
* [[Documentation/{{documentation/version}}/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]] (Jean-Christophe Fillion-Robin)
* [[Documentation/{{documentation/version}}/Modules/GelDosimetry|GelDosimetry]] (Csaba Pinter)
* [[Documentation/{{documentation/version}}/Extensions/MultidimData|Multidimensional data]] (Andras Lasso, Matthew Holden, Kevin Wang)
* [[Documentation/{{documentation/version}}/Extensions/GyroGuide|GyroGuide]] (Ruifeng Chen,Luping Fang, Qing Pan, Xiaolei Chen, Jiashu Zhang)
* [[Documentation/{{documentation/version}}/Modules/MRI SNR Measurement|MRI SNR Measurement]] (Babak Matinfar)
* [[Documentation/{{documentation/version}}/Extensions/OpenCAD|OpenCAD]] (Vivek Narayan, Jayender Jagadeesan)
* [[Documentation/{{documentation/version}}/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] (Atsushi Yamada, Koichiro Murakami, Laurent Chauvin, Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/FinslerTractography|Finsler Tractography]] (Antonio Tristan Vega, Demian Wassermann and Carl-Fredrik Westin)
** [[Documentation/{{documentation/version}}/Modules/FinslerTractography|Finsler Tractography]]
** [[Documentation/{{documentation/version}}/Modules/FinslerBacktracing|Finsler Backtracing]]
* [[Documentation/{{documentation/version}}/Extensions/CurveMaker|CurveMaker]] (Junichi Tokuda)
* [[Documentation/{{documentation/version}}/Extensions/CBC_3D_I2MConversion | CBC 3D I2MConversion]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov and Nikos Chrisochoides)
** [[Documentation/{{documentation/version}}/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]
** [[Documentation/{{documentation/version}}/Modules/MeshCompression|Mesh Compression]]
* [[Documentation/{{documentation/version}}/Extensions/PBNRR|Physics-Based Non-Rigid Registration (PBNRR)]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz and Nikos Chrisochoides)
* [[Documentation/{{documentation/version}}/Extensions/ResectionPlanner|ResectionVolume]] (Matt Lougheed)
* [[Documentation/{{documentation/version}}/Extensions/PETDICOM|PET DICOM]] (Andrey Fedorov, Ethan Ulrich)
* [[Documentation/{{documentation/version}}/Extensions/PETTumorSegmentation|PET Tumor Segmentation]] (Christian Bauer, Markus van Tol)
* [[Documentation/{{documentation/version}}/Extensions/CornerAnnotation|CornerAnnotation]] (Atsushi Yamada)
* [[Documentation/{{documentation/version}}/Extensions/Wasp|Watershed Annotation and Segmentation Plugin.]] (Thomas Lawson)
* [[Documentation/{{documentation/version}}/Extensions/SlicerPetSpectAnalysis|SlicerPetSpectAnalysis]] (Martín Bertran,Natalia Martínez, Guillermo Carbajal, Álvaro Gómez)
** [[Documentation/{{documentation/version}}/Modules/dPetBrainQuantification|dPetBrainQuantification]]
* [[Documentation/{{documentation/version}}/Extensions/IGTWizard|IGTWizard]] (Junichi Tokuda and Atsushi Yamada)
* [[Documentation/{{documentation/version}}/Extensions/MarginCalculator|MarginCalculator]] (Kevin Wang and Winnie Li)
* [[Documentation/{{documentation/version}}/Extensions/Slicer-Featurelets|Slicer-Featurelets]] (Andreas Renner)

==Cat 3==
* [[Documentation/{{documentation/version}}/Extensions/LesionSegmentation|LesionSegmentation]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/TrainModel|LesionSegmentation->TrainModel]] (Mark Scully)
**[[Documentation/{{documentation/version}}/Modules/PredictLesions|LesionSegmentation->PredictLesions]] (Mark Scully)
* [[Documentation/{{documentation/version}}/Extensions/IASEM|IASEM]] (Bradley Lowekamp)
* [[Documentation/{{documentation/version}}/Extensions/PyDevRemoteDebug|Python debugger]] (Andras Lasso)
<noinclude>
{{:Documentation/{{documentation/version}}/FAQ/Extensions|Extensions}}
</noinclude>

File:ExampleTransform.jpg

2015-09-15T16:59:28Z

AndreasRenner: Example of a registration result - the deformation field is illustrated using the module Transforms

Example of a registration result - the deformation field is illustrated using the module Transforms

File:ModuleWidgetFeatureletRegistration.png

2015-09-15T16:51:50Z

AndreasRenner: Module Widget of the Featurelet-Registration module

Module Widget of the Featurelet-Registration module

File:Radonc.png

2015-09-15T16:49:02Z

AndreasRenner: Logo of the Christian Doppler Laboratory for Medical Radiation Research for Radiation Oncology

Logo of the Christian Doppler Laboratory for Medical Radiation Research for Radiation Oncology

User:AndreasRenner

2015-09-15T16:46:04Z

AndreasRenner:

* Andreas Renner
* <email>AndreasRenner@gmx.at</email>

I am student of biomedical engineering at the Vienna University of Technology and I made my Master Thesis in the field of image-guided adaptive radiotherapy at the general hospital of Vienna. My task was to implement a featurelet-based deformable image registration algorithm into the 3D-Slicer platform. Thus, I created an extension for Linux consisting of a single scripted module named '''Featurelet-Registration'''.

User:AndreasRenner

2015-09-15T16:37:09Z

AndreasRenner:

* Andreas Renner
* <email>AndreasRenner@gmx.at</email>

I am student of biomedical engineering at the Vienna University of Technology and I made my Master Thesis in the field of image-guided adaptive radiotherapy at the general hospital of Vienna. My task was to implement a featurelet-based deformable image registration algorithm into the 3D-Slicer platform. Thus, I created a 3D-Slicer extension for Linux consisting of a single scripted module named ,,Featurelet-Registration''.

User:AndreasRenner

2015-09-15T16:30:14Z

AndreasRenner: Created page with '* Andreas Renner * <email>AndreasRenner@gmx.at</email>'

* Andreas Renner
* <email>AndreasRenner@gmx.at</email>

File:Radonc.jpg

2015-09-15T16:10:52Z

AndreasRenner: uploaded a new version of "File:Radonc.jpg": error while uploading the old version

Logo of the Christian Doppler Laboratory for Medical Radiation Research for Radiation Oncology

File:ZMPBMT.png

2015-09-15T15:51:16Z

AndreasRenner: Logo of the Center for Medical Physics and Biomedical Engineering of the general hospital of vienna

Logo of the Center for Medical Physics and Biomedical Engineering of the general hospital of vienna

File:Radonc.jpg

2015-09-15T15:22:04Z

AndreasRenner: Logo of the Christian Doppler Laboratory for Medical Radiation Research for Radiation Oncology

Logo of the Christian Doppler Laboratory for Medical Radiation Research for Radiation Oncology

File:MUW.png

2015-09-15T15:20:18Z

AndreasRenner: Logo of the Medical University of Vienna

Logo of the Medical University of Vienna