Difference between revisions of "Slicer3:Module:Bubble Maker-Documentation"

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[[Documentation|Return to Slicer Documentation]]
 
[[Documentation|Return to Slicer Documentation]]
__NOTOC__
 
 
===Module Name===
 
===Module Name===
 
Bubble Maker
 
Bubble Maker
 
{|
 
{|
|[[Image:Caption1.png|thumb|380px|Fiducials]]
+
|+
|[[Image:Caption3.png|thumb|380px|Results]]
+
| __TOC__
 +
|[[Image:Caption.png|thumb|380px|]]
 +
|[[Image:Caption6.jpg|thumb|380px|]]
 
|}
 
|}
 
  
 
== General Information ==
 
== General Information ==
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===Module Type & Category===
 
===Module Type & Category===
  
Type: CLI (Interactive to-be)
+
Type: CLI
 
+
Category: Level-Set Segmentation
Category: Label Image Generation
 
  
 
===Authors, Collaborators & Contact===
 
===Authors, Collaborators & Contact===
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===Module Description===
 
===Module Description===
This module takes as input a set of fiducials, a vector of floats for the radii of the bubbles in physical units, a reference image on which the bubbles will take place, a label for the resulting label map (under development). It provides a label image with spheres centered on the fiducials with radius corresponding to the radii vector position corresponding to the number of the concerned fiducial in the fiducial set.
+
This module takes as input a set of fiducials, a vector of floats for the radii of the bubbles in physical units, a reference image on which the bubbles will take place, a label for the resulting label map. It provides a label image with spheres centered on the fiducials with radius corresponding to the radii vector position corresponding to the number of the concerned fiducial in the fiducial set.
  
 
===Examples, Use Cases & Tutorials===
 
===Examples, Use Cases & Tutorials===
TODO.
+
{|
 +
|[[Image:Caption.jpg|thumb|380px|Fiducials]]
 +
|[[Image:Caption4.jpg|thumb|380px|Results]]
 +
|}
 +
{|
 +
|[[Image:Caption5.jpg|thumb|380px|Fiducials]]
 +
|[[Image:Caption6.jpg|thumb|380px|Results]]
 +
|}
  
 
===Quick Tour of Features and Use===
 
===Quick Tour of Features and Use===
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{|
 
{|
|[[Image:Caption2.png|thumb|280px|Panel]]
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|[[Image:Captura2.jpg|thumb|280px|Panel]]
|}
+
 
 +
 
 +
 
 +
 
  
== Development ==
 
  
===Dependencies===
 
  
Other modules or packages that are required for this module's use.
+
|
 +
When placing the bubbles for a level-set segmentation, great care has to be taken in order
 +
to produce the optimal seeding.
 +
 +
We want to create bubbles that are entirely inside the structure of interest.
 +
 +
A clever way to proceed is placing the bubbles as far away as possible from
 +
suspected leaking points in the feature image ([[Slicer3:Modules:Target_Preprocessing-Documentation|Target Preprocessing]]  should run before this module).
 +
|}
  
 
===Known bugs===
 
===Known bugs===
  
 
Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker.  
 
Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer3 bug tracker.  
 
 
  
 
===Usability issues===
 
===Usability issues===
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[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Links] to documentation generated by doxygen.
 
[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Links] to documentation generated by doxygen.
 
 
== More Information ==
 
  
 
===Acknowledgment===
 
===Acknowledgment===
Include funding and other support here.
+
This work was developed on financial support from the University of Sevilla, Spain.
 
+
Most of the development took place in the Surgical Planning Laboratory, Harvard Medical School and Brigham and Women's Hospital, under the supervision of Mr. Steve Pieper Ph.D.
===References===
 
Publications related to this module go here. Links to pdfs would be useful.
 

Latest revision as of 19:23, 11 August 2008

Home < Slicer3:Module:Bubble Maker-Documentation

Return to Slicer Documentation

Module Name

Bubble Maker

Caption.png
Caption6.jpg

General Information

This module builds a label image made of bubbles from a set of fiducials and a vector of radii. It is intended for use in combination with the interactive level-set evolution module, providing initialization for the evolution.

Module Type & Category

Type: CLI Category: Level-Set Segmentation

Authors, Collaborators & Contact

  • Author: Carlos S. Mendoza, Universidad de Sevilla
  • Contact: carlos.sanchez.mendoza@gmail.com

Module Description

This module takes as input a set of fiducials, a vector of floats for the radii of the bubbles in physical units, a reference image on which the bubbles will take place, a label for the resulting label map. It provides a label image with spheres centered on the fiducials with radius corresponding to the radii vector position corresponding to the number of the concerned fiducial in the fiducial set.

Examples, Use Cases & Tutorials

Fiducials
Results
Fiducials
Results

Quick Tour of Features and Use

There is only one panel available in this module:

Panel




When placing the bubbles for a level-set segmentation, great care has to be taken in order 
to produce the optimal seeding. 

We want to create bubbles that are entirely inside the structure of interest. 

A clever way to proceed is placing the bubbles as far away as possible from 
suspected leaking points in the feature image (Target Preprocessing  should run before this module).

Known bugs

Follow this link to the Slicer3 bug tracker.

Usability issues

Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.

Source code & documentation

Customize following links for your module.

Links to documentation generated by doxygen.

Acknowledgment

This work was developed on financial support from the University of Sevilla, Spain. Most of the development took place in the Surgical Planning Laboratory, Harvard Medical School and Brigham and Women's Hospital, under the supervision of Mr. Steve Pieper Ph.D.