Difference between revisions of "Documentation/4.2/SlicerApplication/LookupTables/TractographyColors"
From Slicer Wiki
(Prepend documentation/versioncheck template. See http://na-mic.org/Mantis/view.php?id=2887) |
|||
| (3 intermediate revisions by one other user not shown) | |||
| Line 1: | Line 1: | ||
| + | <noinclude>{{documentation/versioncheck}}</noinclude> | ||
<!-- ---------------------------- --> | <!-- ---------------------------- --> | ||
{{documentation/{{documentation/version}}/TractographyColors}} | {{documentation/{{documentation/version}}/TractographyColors}} | ||
| Line 16: | Line 17: | ||
This is the look-up table for the parcellation of the white matter of the brain. | This is the look-up table for the parcellation of the white matter of the brain. | ||
| − | *Authors: Ron Kikinis, Demian Wassermann, Marianna Jakab | + | *Authors: Ron Kikinis, Demian Wassermann, Marianna Jakab, Nikos Makris |
| Line 83: | Line 84: | ||
|- | |- | ||
|11 | |11 | ||
| − | |right arcuate | + | |right arcuate fascicle |
|style="background:rgb(221,130,101)"|rgb(221,130,101) | |style="background:rgb(221,130,101)"|rgb(221,130,101) | ||
|r AF | |r AF | ||
|- | |- | ||
|12 | |12 | ||
| − | |left arcuate | + | |left arcuate fascicle |
|style="background:rgb(216,101,79)"|rgb(216,101,79) | |style="background:rgb(216,101,79)"|rgb(216,101,79) | ||
|l AF | |l AF | ||
|- | |- | ||
|13 | |13 | ||
| − | |right inferior occipito-frontal | + | |right inferior occipito-frontal fascicle |
|style="background:rgb(144,238,144)"|rgb(144,238,144) | |style="background:rgb(144,238,144)"|rgb(144,238,144) | ||
|r IOFF | |r IOFF | ||
|- | |- | ||
|14 | |14 | ||
| − | |left inferior occipito-frontal | + | |left inferior occipito-frontal fascicle |
|style="background:rgb( 60, 179, 113)"|rgb( 60, 179, 113) | |style="background:rgb( 60, 179, 113)"|rgb( 60, 179, 113) | ||
|l IOFF | |l IOFF | ||
|- | |- | ||
|15 | |15 | ||
| − | |right inferior longitudinal | + | |right inferior longitudinal fascicle |
|style="background:rgb(220,245,20)"|rgb(220,245,20) | |style="background:rgb(220,245,20)"|rgb(220,245,20) | ||
|r ILF | |r ILF | ||
|- | |- | ||
|16 | |16 | ||
| − | |left inferior longitudinal | + | |left inferior longitudinal fascicle |
|style="background:rgb(176, 176, 8)"|rgb(176, 176, 8) | |style="background:rgb(176, 176, 8)"|rgb(176, 176, 8) | ||
|l ILF | |l ILF | ||
|- | |- | ||
|17 | |17 | ||
| − | |right uncinate | + | |right uncinate fascicle |
|style="background:rgb(255,250,220)"|rgb(255,250,220) | |style="background:rgb(255,250,220)"|rgb(255,250,220) | ||
|r UF | |r UF | ||
|- | |- | ||
|18 | |18 | ||
| − | |left uncinate | + | |left uncinate fascicle |
|style="background:rgb(230,220,70)"|rgb(230,220,70) | |style="background:rgb(230,220,70)"|rgb(230,220,70) | ||
|l UF | |l UF | ||
| Line 153: | Line 154: | ||
|- | |- | ||
|25 | |25 | ||
| − | |right superior longitudinal | + | |right superior longitudinal fascicle I |
|style="background:rgb(183,214,211)"|rgb(183,214,211) | |style="background:rgb(183,214,211)"|rgb(183,214,211) | ||
|r SLF I | |r SLF I | ||
|- | |- | ||
|26 | |26 | ||
| − | |left superior longitudinal | + | |left superior longitudinal fascicle I |
|style="background:rgb(152,189,207)"|rgb(152,189,207) | |style="background:rgb(152,189,207)"|rgb(152,189,207) | ||
|l SLF I | |l SLF I | ||
|- | |- | ||
|27 | |27 | ||
| − | |right superior longitudinal | + | |right superior longitudinal fascicle II |
|style="background:rgb(178,212,242)"|rgb(178,212,242) | |style="background:rgb(178,212,242)"|rgb(178,212,242) | ||
|r SLF II | |r SLF II | ||
|- | |- | ||
|28 | |28 | ||
| − | |left superior longitudinal | + | |left superior longitudinal fascicle II |
|style="background:rgb(111,184,210)"|rgb(111,184,210) | |style="background:rgb(111,184,210)"|rgb(111,184,210) | ||
|l SLF II | |l SLF II | ||
|- | |- | ||
|29 | |29 | ||
| − | |right superior longitudinal | + | |right superior longitudinal fascicle III |
|style="background:rgb(111,197,131)"|rgb(111,197,131) | |style="background:rgb(111,197,131)"|rgb(111,197,131) | ||
|r SLF III | |r SLF III | ||
|- | |- | ||
|30 | |30 | ||
| − | |left superior longitudinal | + | |left superior longitudinal fascicle III |
|style="background:rgb(68,172,100)"|rgb(68,172,100) | |style="background:rgb(68,172,100)"|rgb(68,172,100) | ||
|l SLF III | |l SLF III | ||
|- | |- | ||
|31 | |31 | ||
| − | |right middle longitudinal | + | |right middle longitudinal fascicle |
|style="background:rgb(85,188,255)"|rgb(85,188,255) | |style="background:rgb(85,188,255)"|rgb(85,188,255) | ||
| − | |r | + | |r MdLF |
|- | |- | ||
|32 | |32 | ||
| − | |left middle longitudinal | + | |left middle longitudinal fascicle |
|style="background:rgb( 65, 105, 225)"|rgb( 65, 105, 225) | |style="background:rgb( 65, 105, 225)"|rgb( 65, 105, 225) | ||
| − | |l | + | |l MdLF |
|- | |- | ||
|33 | |33 | ||
|right extreme capsule | |right extreme capsule | ||
|style="background:rgb(196, 110, 0)"|rgb(196, 110, 0) | |style="background:rgb(196, 110, 0)"|rgb(196, 110, 0) | ||
| − | |r | + | |r EmC |
|- | |- | ||
|34 | |34 | ||
|left extreme capsule | |left extreme capsule | ||
|style="background:rgb(176, 90, 50)"|rgb(160, 82, 45) | |style="background:rgb(176, 90, 50)"|rgb(160, 82, 45) | ||
| − | |l | + | |l EmC |
|- | |- | ||
|35 | |35 | ||
| − | |right superior occipito-frontal | + | |right superior occipito-frontal fascicle |
|style="background:rgb(216,191,216)"|rgb(216,191,216) | |style="background:rgb(216,191,216)"|rgb(216,191,216) | ||
|r SOFF | |r SOFF | ||
|- | |- | ||
|36 | |36 | ||
| − | |left superior occipito-frontal | + | |left superior occipito-frontal fascicle |
|style="background:rgb(221, 160, 221)"|rgb(221, 160, 221) | |style="background:rgb(221, 160, 221)"|rgb(221, 160, 221) | ||
|l SOFF | |l SOFF | ||
Latest revision as of 07:48, 14 June 2013
Home < Documentation < 4.2 < SlicerApplication < LookupTables < TractographyColors
|
For the latest Slicer documentation, visit the read-the-docs. |
Template:Documentation/4.2/TractographyColors
 |
WARNING: This LUT is Work in Progress, which means:
|
- Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
- Go here to create a text file in Slicer LUT format.
- If changing the order of the table, the indices can be recreated with this tcl script.
This is the look-up table for the parcellation of the white matter of the brain.
- Authors: Ron Kikinis, Demian Wassermann, Marianna Jakab, Nikos Makris
Lookup table
| integer_label | text_label | color | notes |
|---|---|---|---|
| 0 | rgba(0,0,0,0) | background | |
| 1 | corpus callosum | rgb(255, 215, 0) | CC |
| 2 | genu of the corpus callosum | rgb(225, 215, 0) | CC genu |
| 3 | body of the corpus callosum | rgb(195, 215, 0) | CC body |
| 4 | splenium of the corpus callosum | rgb(165, 215, 0) | CC splenium |
| 5 | dorsal hippocampal comissure | rgb(122, 120, 170) | DHC |
| 6 | anterior comissure | rgb(92, 140, 170) | AC |
| 7 | posterior comissure | rgb(62, 160, 170) | PC |
| 8 | forniceal comissure | rgb( 32, 180, 170) | FC |
| 9 | pontine tract | rgb(92, 161, 124) | PT |
| 10 | short cortico-cortical pathway | rgb(83,146,164) | U |
| 11 | right arcuate fascicle | rgb(221,130,101) | r AF |
| 12 | left arcuate fascicle | rgb(216,101,79) | l AF |
| 13 | right inferior occipito-frontal fascicle | rgb(144,238,144) | r IOFF |
| 14 | left inferior occipito-frontal fascicle | rgb( 60, 179, 113) | l IOFF |
| 15 | right inferior longitudinal fascicle | rgb(220,245,20) | r ILF |
| 16 | left inferior longitudinal fascicle | rgb(176, 176, 8) | l ILF |
| 17 | right uncinate fascicle | rgb(255,250,220) | r UF |
| 18 | left uncinate fascicle | rgb(230,220,70) | l UF |
| 19 | right cortico-spinal tract | rgb(230, 230, 250) | r CST |
| 20 | left cortico-spinal tract | rgb(200,200,235) | l CST |
| 21 | right optic radiation | rgb(135, 206, 235) | r OR |
| 22 | left optic radiation | rgb(0,151,206) | l OR |
| 23 | right cingulum bundle | rgb(255, 99, 71) | r CB |
| 24 | left cingulum bundle | rgb(250, 90, 90) | l CB |
| 25 | right superior longitudinal fascicle I | rgb(183,214,211) | r SLF I |
| 26 | left superior longitudinal fascicle I | rgb(152,189,207) | l SLF I |
| 27 | right superior longitudinal fascicle II | rgb(178,212,242) | r SLF II |
| 28 | left superior longitudinal fascicle II | rgb(111,184,210) | l SLF II |
| 29 | right superior longitudinal fascicle III | rgb(111,197,131) | r SLF III |
| 30 | left superior longitudinal fascicle III | rgb(68,172,100) | l SLF III |
| 31 | right middle longitudinal fascicle | rgb(85,188,255) | r MdLF |
| 32 | left middle longitudinal fascicle | rgb( 65, 105, 225) | l MdLF |
| 33 | right extreme capsule | rgb(196, 110, 0) | r EmC |
| 34 | left extreme capsule | rgb(160, 82, 45) | l EmC |
| 35 | right superior occipito-frontal fascicle | rgb(216,191,216) | r SOFF |
| 36 | left superior occipito-frontal fascicle | rgb(221, 160, 221) | l SOFF |
| 37 | right cortico-thalamical pathways | rgb(245, 222, 179) | r CT |
| 38 | left cortico-thalamical pathways | rgb(210, 180, 140) | l CT |
| 39 | right cortico-striatal pathways | rgb(244, 164, 96) | r CS |
| 40 | left cortico-striatal pathways | rgb(177,122,101) | l CS |
| 41 | right cortico-pontine projections | rgb(250,250,225) | r CP |
| 42 | left cortico-pontine projections | rgb(200,200,200) | l CP |
| 43 | peritumoral fibers | rgb(100, 177, 198) | PF |
| 44 | rgb(255,255,255) | ||
| 45 | rgb(255,255,255) | ||
| 46 | rgb(255,255,255) | ||
| 47 | rgb(255,255,255) | ||
| 48 | rgb(255,255,255) | ||
| 49 | rgb(255,255,255) | ||
| 50 | rgb(255,255,255) | ||
| 51 | rgb(255,255,255) | ||
| 52 | rgb(255,255,255) | ||
| 53 | rgb(255,255,255) | ||
| 54 | rgb(255,255,255) | ||
| 55 | rgb(255,255,255) | ||
| 56 | rgb(255,255,255) | ||
| 57 | rgb(255,255,255) | ||
| 58 | rgb(255,255,255) | ||
| 59 | rgb(255,255,255) | ||
| 60 | rgb(255,255,255) | ||
| 61 | Probe 1 | rgb(252,115,105) | P1 |
| 62 | Probe 2 | rgb(222,115,105) | P2 |
| 63 | Probe 3 | rgb(192,115,105) | P3 |
| 64 | Probe 4 | rgb(162,115,105) | P4 |
