CCA:Atlases:Florins 2010 Hierarchy
From Slicer Wiki
Home < CCA:Atlases:Florins 2010 Hierarchy
Contents
- 1 Body
- 1.1 Head
- 1.2 Neck
- 1.3 Thorax
- 1.4 Abdomen
- 1.5 Female external genitalia
- 1.6 Male external genitalia
- 1.7 Upper extremity
- 1.8 Lower extremity
- 1.9 Peripheral nervous system
- 1.10 Circulatory system
- 1.11 Systemic venous system
- 1.12 Pulmonary arterial system
- 1.13 Pulmonary venous system
- 1.14 Lymphatic system
- 2 Tissue type
- 3 Pathology
- 4 Segmentation regions
Body
Head
Soft tissue of the head
- Skin of head
- Muscles of head
- Masticatory muscles
- temporal muscle
- masseter muscle
- lateral pterygoid muscle
- medial pterygoid muscle
- Facial muscles
- frontal muscle
- corrugator muscle
- orbicularis occulis muscle
- levator angulis oris muscle
- orbicularis oris muscle
- risorius muscle
- nasalis muscle
- mentalis muscle
- depressor labii inferioris muscle
- depressor angulis oris muscle
- buccinator muscle
- occipitalis muscle
- Masticatory muscles
- Salivary glands
- parotid glands
- sublingual glands
- submandibular glands
- Tongue
- Soft palate
- Tonsils
- External ear
- Middle ear
- Internal ear
- Eyes
- Extraocular muscles
Skull
- frontal bone
- parietal bone
- temporal bone
- sphenoid bone
- ethmoid bone
- occipital bone
- maxilla
- zygomatic bone
- lacrimal bone
- vomer bone
- palatine bone
- mandible
Teeth
Central nervous system
Meninges
- Dura mater
- Arachnoid
- Pia mater
Brain
- CSF spaces
- ventricles
- right lateral ventricle
- left lateral ventricle
- third ventricle
- cerebral aqueduct
- fourth ventricle
- subarachnoid space (including cysterns)
- ventricles
- brain parenchyma
- gray matter of brain
- telencephalon
- cerebral cortex
- frontal lobe
- superior frontal gyrus
- middle frontal gyrus
- inferior frontal gyrus
- orbital gyri
- straight gyrus
- precentral gyrus
- paracentral lobule
- frontal pole
- temporal lobe
- superior temporal gyrus
- middle temporal gyrus
- inferior temporal gyrus
- hippocampus
- parahippocampal gyrus
- medial occipitotemporal gyrus (temporal part)
- lateral occipitotemporal gyrus (temporal part)
- uncus
- temporal pole
- parietal lobe
- postcentral gyrus
- superior parietal lobule
- inferior parietal lobule
- precuneus
- occipital lobe
- superior occipital gyri
- inferior occipital gyri
- gyrus descendens
- lingual gyrus
- medial occipitotemporal gyrus (occipital part)
- lateral occipitotemporal gyrus (occipital part)
- cuneus
- occipital pole
- insular lobe
- gyrus ambiens (limen insulae)
- long insular gyrus
- short insular gyri
- limbic lobe
- cingulate gyrus
- paraterminal gyrus
- indusium griseum
- olfactory bulb
- olfactory tract
- frontal lobe
- subcortical gray matter of telencephalon
- striatum
- nucleus accumbens
- caudate nucleus
- putamen
- pallidum
- globus pallidus pars externa
- globus pallidus pars interna
- septal nuclei
- amygdaloid complex
- claustrum
- striatum
- cerebral cortex
- diencephalon
- thalamus
- thalamic nuclei
- subthalamus
- subthalamic nucleus
- hypothalamus
- hypothalamic nuclei
- mamillary bodies
- substantia perforata
- anterior substantia perforata
- posterior substantia perforata
- pituitary infundibulum
- epithalamus
- habenula
- habenular nuclei
- pineal body
- habenula
- gray matter of mesencephalon
- red nucleus
- substantia nigra
- substantia nigra pars compacta
- substantia nigra pars reticularis
- superior colliculus
- inferior colliculus
- occulomotor nerve nucleus (CN III)
- trochlear nerve nucleus (CN IV)
- mesencephalic nucleus of the trigeminal nerve (CN V)
- periaqueductal gray matter
- gray matter of metencephalon
- gray matter of pons
- principal sensory nucleus of trigeminal nerve (CN V)
- motor nucleus of the trigeminal nerve (CN V)
- abducent nerve nucleus
- facial nerve nucleus
- cerebellar gray matter
- cerebellar cortex
- subcortical cerebellar gray matter
- dentate nucleus
- emboliform nucleus
- globose nucleus
- fastigial nucleus
- gray matter of myelencephalon (medulla oblongata)
- spinal nucleus of the trigeminal nerve (CN V)
- cochlear nuclei (CN VIII)
- vestibular nuclei (CN VIII)
- superior salivatory nucleus
- inferior salivatory nucleus
- nucleus ambiguus
- posterior (dorsal nucleus) of the vagus nerve (CN X)
- solitary tract nucleus
- hipoglossal nerve nucleus
- gray matter of pons
- thalamus
- telencephalon
- cerebral white matter
- association white matter tracts
- U-fibers
- superior longitudinal fasciculus
- inferior longitudinal fasciculus
- arcuate fasciculus
- uncinate fasciculus
- cingulum
- projection fibers
- corticospinal tract
- corticomesencephalic tract
- corticopontine tract
- corticobulbar tract
- optic radiation
- thalamo-cortical projection fibers
- medial lemniscus
- lateral lemniscus
- superior cerebellar peduncles
- middle cerebellar peduncles
- inferior cerebellar peduncles
- optic nerves, optic chiasm, optic tracts
- fornix
- mamilo-thalamic tract
- mamilo-mesencephalic tract
- thalamic fasciculus
- ansa lenticularis
- lenticular fasciculus
- commissural fibers
- corpus callosum
- anterior commissure
- posterior commissure
- association white matter tracts
- cerebellar white matter
- gray matter of brain
Spinal cord
- Gray matter of spinal cord
- anterior horn
- posterior horn
- intermediate horn
- White matter of spinal cord
- Anterior column
- Lateral column
- Posterior column
Other structures
- Pituitary gland
- Adenohypophysis
- Neurohypophysis
Neck
Soft tissue of neck
Skin of neck
Muscles of neck
Pharynx
Larynx
Thyroid gland
Parathyroid glands
Skeleton of neck
- Hyoid bone
- Cervical spinal column
- Cervical vertebrae (C1-C7)
- cervical vertebra C1
- cervical vertebra C2
- cervical vertebra C3
- cervical vertebra C4
- cervical vertebra C5
- cervical vertebra C6
- cervical vertebra C7
- Cervical vertebrae (C1-C7)
Thorax
Soft tissue of thorax
Soft tissue of thoracic wall
Skin of thoracic wall
Muscles of thoracic wall
Contents of thoracic cavity
Trachea
Bronchi
- Right main bronchus
- Left main bronchus
Right lung
- Superior lobe
- Middle lobe
- Inferior lobe
Left lung
- Superior lobe
- Inferior lobe
Pleura
- Parietal pleura
- Visceral pleura
- Pleural cavity
Heart
- Right atrium
- Left atrium
- Atrial septum
- Ventricular septum
- Right ventricle
- Papillary muscles
- Chordae tendineae
- Left ventricle
- Papillary muscles
- Chordae tendineae
- Mitral valve
- Tricuspid valve
- Aortic valve
- Pulmonary valve
Pericardium
- Pericardial cavity
Esophagus
Thymus
Mediastinum
Skeleton of thorax
- Thoracic vertebral column
- Thoracic vertebrae (T1-T12)
- thoracic vertebra T1
- thoracic vertebra T2
- thoracic vertebra T3
- thoracic vertebra T4
- thoracic vertebra T5
- thoracic vertebra T6
- thoracic vertebra T7
- thoracic vertebra T8
- thoracic vertebra T9
- thoracic vertebra T10
- thoracic vertebra T11
- thoracic vertebra T12
- Thoracic vertebrae (T1-T12)
- Ribs (I-XII)
- Rib I
- Rib II
- Rib III
- Rib IV
- Rib V
- Rib VI
- Rib VII
- Rib VIII
- Rib IX
- Rib X
- Rib XI
- Rib XII
- Sternum
- Manubrium
- Body
- Xyphoid process
- Clavicles
Abdomen
Soft tissue of abdomen
Soft tissue of abdominal wall
Skin of abdominal wall
Muscles of abdominal wall
Contents of abdominal cavity
- Peritoneum
- Parietal peritoneum
- Visceral peritoneum
- Omentum
- Peritoneal cavity
- Bursa omentalis
- Douglas' recess
- Falciform ligament of liver
- Mesentery
- Mesocolon
- Transverse mesocolon
- Sigmoid mesocolon
- Broad ligament of uterus
- Mesometrium
- Mesosalpinx
- Mesovarium
- Retroperitoneal space
- Stomach
- Cardia
- Fundus
- Body of stomach
- Pylorus
- Duodenum
- Ampulla of Vater
- Small bowel
- Jejunum
- Ileum
- Colon
- Cecum
- Ileocecal valve
- Appendix
- Ascending colon
- Transverse colon
- Sigmoid colon
- Rectum
- Anus
- Cecum
- Liver
- Capsule
- Right lobe
- Left lobe
- Caudate lobe
- Quadrate lobe
- Ligamentum teres
- Biliary tree
- Right hepatic duct
- Left hepatic duct
- Common hepatic duct
- Common bile duct
- Cystic duct
- Gallblader
- Pancreas
- Head
- Body
- Tail
- Pancreatic duct (duct of Wirsung)
- Islets of Langerhans
- Spleen
- Kidney (R+L)
- Right kidney
- Left kidney
- Parenchyma
- Cortex
- Medulla
- Pelvis
- Ureter (R+L)
- Right ureter
- Left ureter
- Urinary bladder
- Uretra
- Suprarenal glands
- Corticosuprarenal glands
- Medullosuprarenal glands
- Female internal genitalia
- Uterus
- Fundus
- Body
- Cervix
- Round ligaments
- Uterosacral ligaments
- Pubocervical ligament
- Fallopian tubes
- Ovaries
- Vagina
- Uterus
- Male internal genitalia
- Prostate
- Seminal vesicles
- Deferent ducts
Skeleton of Abdomen
Lumbar spine
- Lumbar vertebrae (L1-L5)
- lumbar vertebra L1
- lumbar vertebra L2
- lumbar vertebra L3
- lumbar vertebra L4
- lumbar vertebra L5
Sacrum
Coccis
Coxal bones
Female external genitalia
Vulva
- Vestibule
- Hymen
- Major labia
- Minor labia
- Praeputium
- Clitoris
- Glans
- Clitoral crura
- Cavernous bodies
- Bartolin's glands
Male external genitalia
Penis
- Glans
- Meatus
- Shaft
- Cavernous bodies
- Spongious body
- Preputium
Scrotum
- Skin of scrotum
- Dartos layer
- Cremaster muscle
- Testicles
- Epididimis
- Spermatic cord
Upper extremity
Arm and shoulder
Soft tissue of arm and shoulder
- Skin of arm and shoulder
- Muscles and tendons of arm and shoulder
Skeleton of arm and shoulder
- Scapula
- Humerus
Forearm
Soft tissue of forearm
- Skin of forearm
- Muscles and tendons of forearm
Skeleton of forearm
- Radius
- Ulna
Hand
Soft tissue of hand
- Skin of hand
- Muscles and tendons of hand
Skeleton of hand
- Carpus
- Scaphoid
- Lunate
- Triquetrum
- Pisiform
- Trapezium
- Trapezoid
- Capitate
- Hamate
- Metacarpus
- Metacarpals I-V
- metacarpal I
- metacarpal II
- metacarpal III
- metacarpal IV
- metacarpal V
- Metacarpals I-V
- Phalanges
Lower extremity
Hip and Thigh
Soft tissue of hip and thigh
Soft tissue of hip and thigh
- Skin of hip and thigh
- Muscles and tendons of hip and thigh
Skeleton of hip and thigh
- Femur
Leg
Soft tissue of leg
- Skin of leg
- Muscles and tendons of leg
Skeleton of leg
- Tibia
- Peroneus
Foot
Soft tissue of foot
- Skin of foot
- Muscles and tendons of foot
Skeleton of foot
- Tarsus
- Talus
- Calcaneus
- Navicular
- First Cuneiform
- Second Cuneiform
- Third Cuneiform
- Cuboid
- Metatarsus
- Metatarsals I-V
- metatarsal I
- metatarsal II
- metatarsal III
- metatarsal IV
- metatarsal V
- Metatarsals I-V
- Phalanges
Peripheral nervous system
Cranial nerves
- Olfactory nerve (CN I)
- Optic nerve (CN II)
- Oculomotor nerve (CN III)
- Trochlear nerve (CN IV)
- Trigeminal nerve (CN V)
- Abducent nerve (CN VI)
- Facial nerve (CN VII)
- Intermediate nerve (nervus intermedius, CN VII b)
- Vestibulo-cochlear nerve (CN VIII)
- Glossopharyngeal nerve (CN IX)
- Vagal nerve (CN X)
- Accessory nerve (CN XI)
- Hypoglossal nerve (CN XII)
Spinal nerves
Nervous plexi and intercostal nerves
- Cervical plexus
- Lesser occipital nerve
- Great auricular nerve
- Transverse cervical nerve
- Supraclavicular nerve
- Ansa cervicalis
- Phrenic nerve
- Segmental nerve branches C1-C4
- segmental nerve branch C1
- segmental nerve branch C2
- segmental nerve branch C3
- segmental nerve branch C4
- Brachial plexus
- Dorsal scapular nerve
- Suprascapular nerve
- Nerve to subclavius
- Lateral pectoral nerve
- Musculocutaneus nerve
- Axillary nerve
- Median nerve
- Ulnar nerve
- Radial nerve
- Medial cutaneous nerve of the arm
- Medial cutaneous nerve of the forearm
- Lower subscapular nerve
- Thoracodorsal nerve
- Medial pectoral nerve
- Upper subscapular nerve
- Long thoracic nerve
- Intercostal nerves I-XI
- Intercostal nerve I
- Intercostal nerve II
- Intercostal nerve III
- Intercostal nerve IV
- Intercostal nerve V
- Intercostal nerve VI
- Intercostal nerve VII
- Intercostal nerve VIII
- Intercostal nerve IX
- Intercostal nerve X
- Intercostal nerve XI
- Lumbosacral plexus
- Iliohypogastric nerve
- Ilioinguinal nerve
- Genitofemoral nerve
- Lateral cutaneous femoral nerve
- Femoral nerve
- Obturator nerve
- Accessory obturator nerve
- Sciatic nerve
- Common fibular nerve
- Tibial nerve
- Perforating cutaneous nerve
- Pudendal nerve
- Anococcigeal nerves
Circulatory system
Systemic arterial system
- Aorta
- Right coronary artery
- Left coronary artery
- Aortic arch
- Right brachiocephalic trunc
- Right subclavian artery
- Right vertebral artery
- Anterior spinal artery
- Posterior inferior cerebellar artery
- Basilar artery
- Anterior inferior cerebellar artery
- Pontine arteries
- Superior cerebellar artery
- Posterior cerebellar artery
- Internal thoracic artery
- Thyrocervical trunk
- Costocervical trunk
- Dorsal scapular artery
- Axillary artery
- Brachial artery
- Right vertebral artery
- Right common carotid artery
- Right external carotid artery
- Right internal carotid artery
- Right opthalmic artery
- Right anterior cerebral artery
- Anterior communicating artery
- Right middle cerebral artery
- Right posterior communicating artery
- Right subclavian artery
- Left common carotid artery
- Left external carotid artery
- Left internal carotid artery
- see right internal carotid artery
- Left subclavian artery
- see right subclavian artery
- Right brachiocephalic trunc
- Descending thoracic aorta
- Bronchial arteries
- Esophageal arteries
- Posterior intercostal arteries
- Abdominal aorta
- Inferior phrenic artery
- Celiac trunk
- Superior mesenteric artery
- Middle suprarenal artery
- Renal artery
- Gonadal (ovarian/testicular) artery
- Lumbar arteries
- Inferior mesenteric artery
- Median sacral artery
- Right common iliac artery
- Right external iliac artery
- Inferior epigastric artery
- Deep circumflex iliac artery
- Femoral artery
- Right internal iliac artery
- Right iliolumbar artery
- Right lateral sacral arteries
- Right superior gluteal artery
- Right obturator artery
- Right inferior gluteal artery
- Right umbilical artery
- Right uterine/deferential artery
- Right inferior vesical artery
- Right middle rectal artery
- Right internal pudendal artery
- Right external iliac artery
- Left common iliac artery
- Left external iliac artery
- Left internal iliac artery
Systemic venous system
- Superior vena cava
- Inferior vena cava
- Azygos vein
- Hemyazygos vein
- Portal vein
Pulmonary arterial system
- Right pulmonary artery
- Left pulmonary artery
Pulmonary venous system
- Right superior pulmonary vein
- Right inferior pulmonary vein
- Left superior pulmonary vein
- Left inferior pulmonary vein
Lymphatic system
Lymphatic ducts
- Right lymphatic duct
- Thoracic (left lymphatic) duct
Lymph node groups
- Cervical lymph nodes
- Supraclavicular lymph nodes
- Occipital lymph nodes
- Pre-auricular lymph nodes
- Infraclavicular lymph nodes
- Axillary lymph nodes
- Pectoral lymph nodes
- Epitrochlear/brachial lymph nodes
- Mediastinal lymph nodes
- Mesenteric lymph nodes
- Para-aortal lymph nodes
- Iliac lymph nodes
- Inguinal lymph nodes
- Femoral lymph nodes
- Popliteal
Tissue type
- gray matter
- white matter
- cerebro-spinal fluid (CSF)
- bone
- blood
- cartilage
- air
Pathology
- Tumor
- Edema
- Bleeding
Segmentation regions
- unsegmented region
- background
- annotation
- annotation 1
- annotation 2
- annotation 3
- annotation 4
- annotation 5
- annotation 6
- annotation 7
- annotation 8
- annotation 9
- annotation 10
- annotation 11
- annotation 12
- annotation 13
- annotation 14
- annotation 15
- annotation 16
- user defined region
- region 1
- region 2
- region 3
- region 4
- region 5
- region 6
- region 7
- region 8
- region 9
- region 10
- region 12
- region 13
- region 14
- region 15
- region 16