Documentation/4.2/Developers/Tutorials/PortingCLIToITKv4
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ITKv4
Links to ITKv4 Links to Migration guide
Known issues in porting CLIs
My filter doesn't run.
The API to ThreadedGenerateData() changed in ITKv4 (use of a defined type ThreadIdType). This can result in your implementation of ThreadedGenerateData() defining a new function instead of overriding the version called by the pipeline. ITKv4 attempts to emit a run-time exception but there are circumstances where the exception cannot be thrown (for instance, if the superclass already provided a valid version of ThreadedGenerateData()). If your filter is not executing in ITKv4, check the declaration of ThreadedGenerateData().
DICOM/GDCM
If your CLI used GDCM directly, you will need to port your CLI to ITKv4. ITKv4 uses GDCM 2 which has many API changes from GDCM 1.