CCA:Atlases:Florins 2010 Hierarchy

body

head

soft tissue of the head

• skin of head
• muscles of head
  • masticatory muscles
    • temporal muscle
    • masseter muscle
    • lateral pterygoid muscle
    • medial pterygoid muscle
  • facial muscles
    • frontal muscle
    • corrugator muscle
    • orbicularis occulis muscle
    • levator angulis oris muscle
    • orbicularis oris muscle
    • risorius muscle
    • nasalis muscle
    • mentalis muscle
    • depressor labii inferioris muscle
    • depressor angulis oris muscle
    • buccinator muscle
    • occipitalis muscle
• salivary glands
  • parotid glands
  • sublingual glands
  • submandibular glands
• tongue
• soft palate
• tonsils
• external ear
• middle ear
• internal ear
• eyes
• extraocular muscles

skull

• frontal bone
• parietal bone
• temporal bone
• sphenoid bone
• ethmoid bone
• occipital bone
• maxilla
• zygomatic bone
• lacrimal bone
• vomer bone
• palatine bone
• mandible

central nervous system

meninges

• dura mater
• arachnoid
• pia mater

Brain

• CSF spaces
  • ventricles
    • right lateral ventricle
    • left lateral ventricle
    • third ventricle
    • cerebral aqueduct
    • fourth ventricle
  • subarachnoid space (including cysterns)

• brain parenchyma
  • gray matter of brain
    • telencephalon
      • cerebral cortex
        • frontal lobe
          • superior frontal gyrus
          • middle frontal gyrus
          • inferior frontal gyrus
          • orbital gyri
          • straight gyrus
          • precentral gyrus
          • paracentral lobule
          • frontal pole
        • temporal lobe
          • superior temporal gyrus
          • middle temporal gyrus
          • inferior temporal gyrus
          • hippocampus
          • parahippocampal gyrus
          • temporal part of medial occipitotemporal gyrus
          • temporal part of lateral occipitotemporal gyrus
          • uncus
          • temporal pole
        • parietal lobe
          • postcentral gyrus
          • superior parietal lobule
          • inferior parietal lobule
          • precuneus
        • occipital lobe
          • superior occipital gyri
          • inferior occipital gyri
          • gyrus descendens
          • lingual gyrus
          • occipital part of medial occipitotemporal gyrus
          • occipital part of lateral occipitotemporal gyrus
          • cuneus
          • occipital pole
        • insular lobe
          • limen of insula
          • long insular gyrus
          • short insular gyri
        • limbic lobe
          • cingulate gyrus
          • paraterminal gyrus
          • indusium griseum
          • olfactory bulb
          • olfactory tract
      • subcortical gray matter of telencephalon
        • striatum
          • nucleus accumbens
          • caudate nucleus
          • putamen
        • pallidum
          • globus pallidus pars externa
          • globus pallidus pars interna
        • septal nuclei
        • amygdaloid complex
        • claustrum
    • diencephalon
      • thalamus
        • thalamic nuclei
      • subthalamus
        • subthalamic nucleus
      • hypothalamus
        • hypothalamic nuclei
        • mamillary bodies
        • substantia perforata
          • anterior substantia perforata
          • posterior substantia perforata
        • pituitary infundibulum
      • epithalamus
        • habenula
          • habenular nuclei
        • pineal body
      • gray matter of mesencephalon
        • red nucleus
        • substantia nigra
          • substantia nigra pars compacta
          • substantia nigra pars reticularis
        • superior colliculus
        • inferior colliculus
        • occulomotor nerve nucleus (CN III)
        • trochlear nerve nucleus (CN IV)
        • mesencephalic nucleus of the trigeminal nerve (CN V)
        • periaqueductal gray matter
      • gray matter of metencephalon
        • gray matter of pons
          • principal sensory nucleus of trigeminal nerve (CN V)
          • motor nucleus of the trigeminal nerve (CN V)
          • abducent nerve nucleus
          • facial nerve nucleus
        • cerebellar gray matter
          • cerebellar cortex
          • subcortical cerebellar gray matter
            • dentate nucleus
            • emboliform nucleus
            • globose nucleus
            • fastigial nucleus
        • gray matter of myelencephalon (medulla oblongata)
          • spinal nucleus of the trigeminal nerve (CN V)
          • cochlear nuclei (CN VIII)
          • vestibular nuclei (CN VIII)
          • superior salivatory nucleus
          • inferior salivatory nucleus
          • nucleus ambiguus
          • posterior (dorsal nucleus) of the vagus nerve (CN X)
          • solitary tract nucleus
          • hipoglossal nerve nucleus
  • cerebral white matter
    • association white matter tracts
      • U-fibers
      • superior longitudinal fasciculus
      • inferior longitudinal fasciculus
      • arcuate fasciculus
      • uncinate fasciculus
      • cingulum
    • projection fibers
      • corticospinal tract
      • corticomesencephalic tract
      • corticopontine tract
      • corticobulbar tract
      • optic radiation
      • thalamo-cortical projection fibers
      • medial lemniscus
      • lateral lemniscus
      • superior cerebellar peduncles
      • middle cerebellar peduncles
      • inferior cerebellar peduncles
      • optic nerves, optic chiasm, optic tracts
      • fornix
      • mamilo-thalamic tract
      • mamilo-mesencephalic tract
      • thalamic fasciculus
        • ansa lenticularis
        • lenticular fasciculus
    • commissural fibers
      • corpus callosum
      • anterior commissure
      • posterior commissure
  • cerebellar white matter

spinal cord

• gray matter of spinal cord
  • anterior horn
  • posterior horn
  • intermediate horn
• white matter of spinal cord
  • Anterior column
  • Lateral column
  • Posterior column

endocrine system of brain

• pituitary gland
  • adenohypophysis
  • neurohypophysis

neck

soft tissue of neck

skeleton of neck

• hyoid bone
• cervical spinal column
  • cervical vertebrae
    • cervical vertebra C1
    • cervical vertebra C2
    • cervical vertebra C3
    • cervical vertebra C4
    • cervical vertebra C5
    • cervical vertebra C6
    • cervical vertebra C7

thorax

soft tissue of thorax

contents of thoracic cavity

bronchi

• right main bronchus
• left main bronchus

Right lung

• superior lobe of right lung
• middle lobe of right lung
• inferior lobe of right lung

Left lung

• superior lobe of left lung
• inferior lobe of left lung

Pleura

• parietal pleura
• visceral pleura
• pleural cavity

Heart

• right atrium
• left atrium
• atrial septum
• ventricular septum
• right ventricle of heart
  • papillary muscles of right ventricle of heart
  • chordae tendineae of right ventricle of heart
• left ventricle of heart
  • papillary muscles of left ventricle of heart
  • chordae tendineae of left ventricle of heart
• mitral valve
• tricuspid valve
• aortic valve
• pulmonary valve

pericardium

• pericardial cavity

skeleton of thorax

• thoracic vertebral column
  • thoracic vertebrae
    • thoracic vertebra T1
    • thoracic vertebra T2
    • thoracic vertebra T3
    • thoracic vertebra T4
    • thoracic vertebra T5
    • thoracic vertebra T6
    • thoracic vertebra T7
    • thoracic vertebra T8
    • thoracic vertebra T9
    • thoracic vertebra T10
    • thoracic vertebra T11
    • thoracic vertebra T12
• ribs
  • rib I
  • rib II
  • rib III
  • rib IV
  • rib V
  • rib VI
  • rib VII
  • rib VIII
  • rib IX
  • rib X
  • rib XI
  • rib XII
• sternum
  • manubrium
  • body of sternum
  • xyphoid process
• clavicles

abdomen

soft tissue of abdomen

contents of abdominal cavity

• peritoneum
  • parietal peritoneum
  • visceral peritoneum
  • omentum
  • peritoneal cavity
    • bursa omentalis
    • Douglas' recess
  • falciform ligament of liver
  • mesentery
  • mesocolon
    • transverse mesocolon
    • sigmoid mesocolon
  • broad ligament of uterus
    • mesometrium
    • mesosalpinx
    • mesovarium
• retroperitoneal space
• stomach
  • cardia
  • fundus of stomach
  • body of stomach
  • pylorus
• duodenum
  • ampulla of Vater
• small bowel
  • jejunum
  • ileum
• colon
  • cecum
    • ileocecal valve
    • appendix
  • ascending colon
  • transverse colon
  • sigmoid colon
  • rectum
  • anus
• liver
  • capsule of liver
  • right lobe of liver
  • left lobe of liver
  • caudate lobe of liver
  • quadrate lobe of liver
  • ligamentum teres
• biliary tree
  • right hepatic duct
  • left hepatic duct
  • common hepatic duct
  • common bile duct
  • cystic duct
  • gallbladder
• pancreas
  • head of pancreas
  • body of pancreas
  • tail of pancreas
  • pancreatic duct
  • islets of Langerhans
• spleen
• right kidney
  • parenchyma of right kidney
    • cortex of right kidney
    • medulla of right kidney
• right renal pelvis
• left kidney
  • parenchyma of left kidney
    • cortex of left kidney
    • medulla of left kidney
• left renal pelvis
• right ureter
• left ureter
• urinary bladder
• uretra
• suprarenal glands
  • corticosuprarenal glands
  • medullosuprarenal glands
• female internal genitalia
  • uterus
    • fundus of uterus
    • body of uterus
    • cervix
    • round ligaments
    • uterosacral ligaments
    • pubocervical ligament
  • fallopian tubes
  • ovaries
  • vagina
• male internal genitalia
  • prostate
  • seminal vesicles
  • deferent ducts

skeleton of Abdomen

lumbar spine

• lumbar vertebrae
  • lumbar vertebra L1
  • lumbar vertebra L2
  • lumbar vertebra L3
  • lumbar vertebra L4
  • lumbar vertebra L5

female external genitalia

vulva

• vulval vestibule
• hymen
• major labia
• minor labia
• praeputium
• clitoris
  • glans of clitoris
  • body of clitoris
    • corpus cavernosum of clitoris
  • prepuce of clitoris
• Bartolin's glands

male external genitalia

penis

• glans of penis
  • meatus
• shaft
  • corpus cavernosum of penis
  • spongious body
• prepuce of penis

scrotum

• skin of scrotum
• dartos layer
• cremaster muscle
• testicles
  • epididimis
  • spermatic cord

upper extremity

arm and shoulder

soft tissue of arm and shoulder

• skin of arm and shoulder
• muscles and tendons of arm and shoulder

skeleton of arm and shoulder

• scapula
• humerus

forearm

soft tissue of forearm

• skin of forearm
• muscles and tendons of forearm

skeleton of forearm

• radius
• ulna

hand

soft tissue of hand

• skin of hand
• muscles and tendons of hand

skeleton of hand

• carpus
  • scaphoid
  • lunate
  • triquetrum
  • pisiform
  • trapezium
  • trapezoid
  • capitate
  • hamate
• metacarpus
  • metacarpals
    • metacarpal I
    • metacarpal II
    • metacarpal III
    • metacarpal IV
    • metacarpal V
• phalanges of hand

lower extremity

hip and thigh

soft tissue of hip and thigh

• skin of hip and thigh
• muscles and tendons of hip and thigh

skeleton of hip and thigh

• femur

leg

soft tissue of leg

• skin of leg
• muscles and tendons of leg

skeleton of leg

• tibia
• peroneus

foot

soft tissue of foot

• skin of foot
• muscles and tendons of foot

skeleton of foot

• tarsus
  • talus
  • calcaneus
  • navicular
  • first cuneiform
  • second cuneiform
  • third cuneiform
  • cuboid
• metatarsus
  • metatarsals
    • metatarsal I
    • metatarsal II
    • metatarsal III
    • metatarsal IV
    • metatarsal V

• phalanges of foot

peripheral nervous system

cranial nerves

• olfactory nerve (CN I)
• optic nerve (CN II)
• oculomotor nerve (CN III)
• rrochlear nerve (CN IV)
• rrigeminal nerve (CN V)
• abducent nerve (CN VI)
• dacial nerve (CN VII)
• intermediate nerve (CN VII b)
• vestibulo-cochlear nerve (CN VIII)
• glossopharyngeal nerve (CN IX)
• vagal nerve (CN X)
• accessory nerve (CN XI)
• hypoglossal nerve (CN XII)

spinal nerves

nervous plexi and intercostal nerves

• cervical plexus
  • lesser occipital nerve
  • great auricular nerve
  • transverse cervical nerve
  • supraclavicular nerve
  • ansa cervicalis
  • phrenic nerve
  • segmental nerve branches
    • segmental nerve branch C1
    • segmental nerve branch C2
    • segmental nerve branch C3
    • segmental nerve branch C4
• brachial plexus
  • dorsal scapular nerve
  • suprascapular nerve
  • nerve to subclavius
  • lateral pectoral nerve
  • musculocutaneus nerve
  • axillary nerve
  • median nerve
  • ulnar nerve
  • radial nerve
  • medial cutaneous nerve of the arm
  • medial cutaneous nerve of the forearm
  • lower subscapular nerve
  • thoracodorsal nerve
  • medial pectoral nerve
  • upper subscapular nerve
  • long thoracic nerve
• intercostal nerves
  • intercostal nerve I
  • intercostal nerve II
  • intercostal nerve III
  • intercostal nerve IV
  • intercostal nerve V
  • intercostal nerve VI
  • intercostal nerve VII
  • intercostal nerve VIII
  • intercostal nerve IX
  • intercostal nerve X
  • intercostal nerve XI
• lumbosacral plexus
  • iliohypogastric nerve
  • ilioinguinal nerve
  • genitofemoral nerve
  • lateral cutaneous femoral nerve
  • femoral nerve
  • obturator nerve
  • accessory obturator nerve
  • sciatic nerve
    • common fibular nerve
    • tibial nerve
  • perforating cutaneous nerve
  • pudendal nerve
  • anococcigeal nerves

circulatory system

systemic arterial system

• aorta
  • right coronary artery
  • left coronary artery
  • aortic arch
    • right brachiocephalic trunc
      • right subclavian artery
        • right vertebral artery
          • anterior spinal artery
          • posterior inferior cerebellar artery
          • basilar artery
            • anterior inferior cerebellar artery
            • pontine arteries
            • superior cerebellar artery
            • posterior cerebellar artery
        • internal thoracic artery
        • thyrocervical trunk
        • costocervical trunk
        • dorsal scapular artery
        • axillary artery
          • brachial artery
      • right common carotid artery
        • right external carotid artery
        • right internal carotid artery
          • right opthalmic artery
          • right anterior cerebral artery
            • anterior communicating artery
        • right middle cerebral artery
        • right posterior communicating artery
    • left common carotid artery
      • left external carotid artery
      • left internal carotid artery
        • see right internal carotid artery
    • left subclavian artery
      • see right subclavian artery
  • descending thoracic aorta
    • bronchial arteries
    • esophageal arteries
    • posterior intercostal arteries
  • abdominal aorta
    • inferior phrenic artery
    • celiac trunk
    • superior mesenteric artery
    • middle suprarenal artery
    • renal artery
    • gonadal (ovarian/testicular) artery
    • lumbar arteries
    • inferior mesenteric artery
    • median sacral artery
    • right common iliac artery
      • right external iliac artery
        • inferior epigastric artery
        • deep circumflex iliac artery
        • femoral artery
      • right internal iliac artery
        • right iliolumbar artery
        • right lateral sacral arteries
        • right superior gluteal artery
        • right obturator artery
        • right inferior gluteal artery
        • right umbilical artery
        • right uterine/deferential artery
        • right inferior vesical artery
        • right middle rectal artery
        • right internal pudendal artery
    • left common iliac artery
      • left external iliac artery
      • left internal iliac artery

systemic venous system

• superior vena cava
• inferior vena cava
• azygos vein
• hemyazygos vein
• portal vein

pulmonary arterial system

• right pulmonary artery
• left pulmonary artery

pulmonary venous system

• right superior pulmonary vein
• right inferior pulmonary vein
• left superior pulmonary vein
• left inferior pulmonary vein

lymphatic system

lymphatic ducts

• right lymphatic duct
• thoracic duct

lymph node groups

• cervical lymph nodes
• supraclavicular lymph nodes
• occipital lymph nodes
• pre-auricular lymph nodes
• infraclavicular lymph nodes
• axillary lymph nodes
• pectoral lymph nodes
• epitrochlear/brachial lymph nodes
• mediastinal lymph nodes
• mesenteric lymph nodes
• para-aortal lymph nodes
• iliac lymph nodes
• inguinal lymph nodes
• femoral lymph nodes
• popliteal lymph nodes

material

• air
• liquid

biological material

• blood
• cerebro-spinal fluid

tissue

• gray matter
• white matter
• bone
• cartilage
• fat
• connective tissue

pathology

• tumor
• edema
• bleeding
• necrosis
• clot

segmentation regions

• unsegmented region
• background
• annotation
  • annotation 1
  • annotation 2
  • annotation 3
  • annotation 4
  • annotation 5
  • annotation 6
  • annotation 7
  • annotation 8
  • annotation 9
  • annotation 10
  • annotation 11
  • annotation 12
  • annotation 13
  • annotation 14
  • annotation 15
  • annotation 16
• user defined region
  • region 1
  • region 2
  • region 3
  • region 4
  • region 5
  • region 6
  • region 7
  • region 8
  • region 9
  • region 10
  • region 12
  • region 13
  • region 14
  • region 15
  • region 16