Latest revision as of 14:32, 29 October 2015

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Modules by category

46 categories:

Astronomy
Cardiac
Cardiac MRI Toolkit
Chest Imaging Platform
- Toolkit
CIP
Converters
Developer Tools
- DICOM Plugins
- Editor Extensions
- Matlab
- Segment Editor Extensions
- Utils
Diffusion
- Diffusion Data Conversion
- Diffusion Tensor Images
- Diffusion Weighted Images
- Import and Export
- Process
- Quantify
- Tractography
  - Region-based
- Utilities
Editor Effects
EditorEffect
Endoscopy
Examples
Exporter
Filter
Filtering
- Arithmetic
- Denoising
- Morphology
IGT
Informatics
- Converters
Legacy
- Converters
- Filtering
- Registration
- Work in Progress
  - Diffusion Tensor
    - Test
Libraries
Machine Learning
Margin Calculator
Mesh Generation
MeshGeneration
Microscopy
MultiVolume Support
Pathology
Perk Tutor
Plastimatch
- Registration
- Utilities
Quantification
- ChangeQuantification
Radiology
Radiotherapy
Registration
- CMF Registration
  - Voxelbase Registration
- Label Registration
- Specialized
Segmentation
- Specialized
Sequences
Slicelets
SlicerProstate
Surface Models
TestCases
Testing
- IGT Tests
- SlicerRT Tests
- TestCases
Ultrasound
Uncategorized
Utilities
- BRAINS
Vascular Modeling Toolkit
Virtual Reality
Web System Tools
Wizards
XNATSlicer

Astronomy

AstroVolume (loadable, bundled in SlicerAstro extension)
AstroReproject (loadable, bundled in SlicerAstro extension)
AstroStatistics (loadable, bundled in SlicerAstro extension)
AstroMasking (loadable, bundled in SlicerAstro extension)
AstroSmoothing (loadable, bundled in SlicerAstro extension)
AstroSampleData (scripted, bundled in SlicerAstro extension)
AstroProfiles (loadable, bundled in SlicerAstro extension)
AstroMomentMaps (loadable, bundled in SlicerAstro extension)
AstroPVSlice (loadable, bundled in SlicerAstro extension)
AstroPVDiagram (loadable, bundled in SlicerAstro extension)
AstroModeling (loadable, bundled in SlicerAstro extension)
AstroWelcome (loadable, bundled in SlicerAstro extension)
SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)

Cardiac

Philips4dUsDicomPatcher (scripted, bundled in SlicerHeart extension)
ValveView (scripted, bundled in SlicerHeart extension)

Cardiac MRI Toolkit

CMRToolkitPVAntrumCut (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitBooleanREMOVEFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
LASegmentationWorkflow (scripted, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitRegistrationBRAINSFit (scripted, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitAutomaticLeftAtrialScar (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitConnectedThresholdFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitWizard (scripted, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitIsolatedConnectedFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitInhomogeneityCorrection (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitAxialDilate (cli, bundled in Cardiac_MRI_Toolkit extension)
ScarVisualization (scripted, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitRegistration (scripted, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitLASegmentationGraphCuts (cli, bundled in Cardiac_MRI_Toolkit extension)

Chest Imaging Platform

CIP_MIPViewer (scripted, bundled in Chest_Imaging_Platform extension)
CIP_BodyComposition (scripted, bundled in Chest_Imaging_Platform extension)
CIP_InteractiveLobeSegmentation (scripted, bundled in Chest_Imaging_Platform extension)
CIP_TracheaStentPlanning (scripted, bundled in Chest_Imaging_Platform extension)
CIP_LesionModel (scripted, bundled in Chest_Imaging_Platform extension)
AirwayInspector (loadable, bundled in Chest_Imaging_Platform extension)
CIP_PAARatio (scripted, bundled in Chest_Imaging_Platform extension)
CIP_CalciumScoring (scripted, bundled in Chest_Imaging_Platform extension)
CIP_ParenchymaAnalysis (scripted, bundled in Chest_Imaging_Platform extension)
CIP_ParenchymaSubtypeTraining (scripted, bundled in Chest_Imaging_Platform extension)
CIP_PointsLabelling (scripted, bundled in Chest_Imaging_Platform extension)

Toolkit

CIP

CIP_ (scripted, bundled in Chest_Imaging_Platform extension)
CIP_Common (scripted, bundled in Chest_Imaging_Platform extension)

Converters

QuadEdgeSurfaceMesher (cli, bundled in SlicerProstate extension)
CropVolume (loadable, built-in)
OrientScalarVolume (cli, built-in)
ConvertVTK (cli, bundled in UKFTractography extension)
VectorToScalarVolume (scripted, built-in)
CreateDICOMSeries (cli, built-in)
ParticlesDisplay (loadable, bundled in Chest_Imaging_Platform extension)
RegionType (loadable, bundled in Chest_Imaging_Platform extension)

Developer Tools

Cameras (loadable, built-in)
ExecutionModelTour (cli, built-in)
NodeModifiedStatistics (scripted, bundled in DebuggingTools extension)
PyDevRemoteDebug (scripted, bundled in DebuggingTools extension)
ExtensionWizard (scripted, built-in)
NodeInfo (scripted, bundled in DebuggingTools extension)
ImageMaker (cli, bundled in ImageMaker extension)
ExtensionStats (scripted, bundled in DeveloperToolsForExtensions extension)
DeveloperToolsForExtensions (scripted, bundled in DeveloperToolsForExtensions extension)
EventBroker
DoubleArrays (loadable, built-in)

DICOM Plugins

DICOMParametricMapPlugin
DicomUltrasoundPlugin
DICOMSegmentationPlugin
DICOMSlicerDataBundlePlugin
DICOMTID1500Plugin
DICOMPETSUVPlugin
DICOMScalarVolumePlugin
DICOMDiffusionVolumePlugin
DICOMLongitudinalPETCTPlugin
DicomSroImportPlugin
DICOMRWVMPlugin
DicomRtImportExportPlugin
MultiVolumeImporterPlugin

Editor Extensions

FastGrowCutEffect (scripted, bundled in FastGrowCutEffect extension)
CarreraSliceEffect (scripted, bundled in CarreraSlice extension)
QuickTCGAEffect (scripted, bundled in SlicerPathology extension)
PETTumorSegmentationEffect (scripted, bundled in PETTumorSegmentation extension)
BinaryWatershedEffect (scripted, bundled in IASEM extension)
DoubleThresholdEffect (scripted, bundled in IASEM extension)
ShortCutEffect (scripted, bundled in SlicerPathology extension)

Matlab

MatlabModuleGenerator (loadable, bundled in MatlabBridge extension)
MatlabCommander (cli, bundled in MatlabBridge extension)

Segment Editor Extensions

SegmentEditorPETTumor (scripted, bundled in PETTumorSegmentation extension)

Utils

SlicerProstate (scripted, bundled in SlicerProstate extension)

Diffusion

DMRIInstall (scripted, built-in)

Diffusion Data Conversion

DWIConvert (cli, built-in)

Diffusion Tensor Images

ResampleDTIlogEuclidean (cli, bundled in ResampleDTIlogEuclidean extension)

Diffusion Weighted Images

BRAINSDWICleanup (cli, built-in)

Import and Export

DWIConvert (cli, built-in)
DICOMTract_to_VTK (cli, bundled in SlicerDMRI extension)
VTK_to_DICOMTract (cli, bundled in SlicerDMRI extension)

Process

DiffusionWeightedVolumeMasking (cli, bundled in SlicerDMRI extension)
DWIToDTIEstimation (cli, bundled in SlicerDMRI extension)

Quantify

DiffusionTensorScalarMeasurements (cli, bundled in SlicerDMRI extension)
FiberTractMeasurements (cli, bundled in SlicerDMRI extension)

Tractography

TractographyInteractiveSeeding (loadable, bundled in SlicerDMRI extension)
TractographyDisplay (loadable, bundled in SlicerDMRI extension)
UKFTractography (cli, bundled in UKFTractography extension)

Region-based

TractographyLabelMapSeeding (cli, bundled in SlicerDMRI extension)
FiberBundleLabelSelect (cli, bundled in SlicerDMRI extension)

Utilities

BRAINSDWICleanup (cli, built-in)
ResampleDTIVolume (cli, built-in)
FiberBundleToLabelMap (scripted, bundled in SlicerDMRI extension)
ResampleScalarVectorDWIVolume (cli, built-in)
DICOM2FullBrainTractography (scripted, bundled in SlicerDMRI extension)

Editor Effects

WindowLevelEffect (scripted, bundled in WindowLevelEffect extension)

EditorEffect

PETTumorSegmentation (loadable, bundled in PETTumorSegmentation extension)

Endoscopy

Endoscopy (scripted, built-in)

Examples

FastGrowCut (loadable, bundled in FastGrowCutEffect extension)
QuickTCGA (loadable, bundled in SlicerPathology extension)
FastGrowCutSegmenter (loadable, bundled in CarreraSlice extension)
ShortCutCore (loadable, bundled in SlicerPathology extension)
GraphCutInteractiveSegmenter (loadable, bundled in GraphCutSegment extension)
CarreraSlice (loadable, bundled in CarreraSlice extension)

Exporter

SlicerToKiwiExporter (scripted, bundled in SlicerToKiwiExporter extension)

Filter

IslandRemoval (cli, built-in)

Filtering

SegmentationSmoothing (cli, bundled in SlicerProstate extension)
N4ITKBiasFieldCorrection (cli, built-in)
ImageLabelCombine (cli, built-in)
VotingBinaryHoleFillingImageFilter (cli, built-in)
CheckerBoardFilter (cli, built-in)
AstroSmoothing (loadable, bundled in SlicerAstro extension)
ExtractSkeleton (cli, built-in)
SimpleFilters (scripted, built-in)
ThresholdScalarVolume (cli, built-in)
HistogramMatching (cli, built-in)

Arithmetic

MultiplyScalarVolumes (cli, built-in)
AddScalarVolumes (cli, built-in)
MaskScalarVolume (cli, built-in)
SubtractScalarVolumes (cli, built-in)
CastScalarVolume (cli, built-in)
BlendVectorVolumes (cli, bundled in OpenCVExample extension)

Denoising

CurvatureAnisotropicDiffusion (cli, built-in)
GradientAnisotropicDiffusion (cli, built-in)
MedianImageFilter (cli, built-in)
GaussianBlurImageFilter (cli, built-in)

Morphology

GrayscaleFillHoleImageFilter (cli, built-in)
GrayscaleGrindPeakImageFilter (cli, built-in)

IGT

Viewpoint (scripted, bundled in SlicerIGT extension)
CollectFiducials (loadable, bundled in SlicerIGT extension)
TransformFusion (loadable, bundled in SlicerIGT extension)
GyroGuide (scripted, bundled in GyroGuide extension)
PlusModelCatalogBrowser (scripted, bundled in SlicerIGT extension)
CreateModels (loadable, bundled in SlicerIGT extension)
NeedleFinder (scripted, bundled in NeedleFinder extension)
TrackerStabilizer (loadable, bundled in TrackerStabilizer extension)
PathExplorer (loadable, bundled in SlicerIGT extension)
UltrasoundSnapshots (loadable, bundled in SlicerIGT extension)
BreachWarning (loadable, bundled in SlicerIGT extension)
FiducialRegistrationWizard (loadable, bundled in SlicerIGT extension)
ModelRegistration (scripted, bundled in SlicerIGT extension)
ResectionVolume (scripted, bundled in ResectionPlanner extension)
PivotCalibration (loadable, bundled in SlicerIGT extension)
VolumeResliceDriver (loadable, bundled in SlicerIGT extension)
OpenIGTLinkRemote (loadable, bundled in SlicerIGT extension)
FiducialsToModelRegistration (scripted, bundled in SlicerIGT extension)
Watchdog (loadable, bundled in SlicerIGT extension)
CornerAnnotation (scripted, bundled in CornerAnnotation extension)
OpenIGTLinkIF (loadable, built-in)
MarkupsToModel (loadable, bundled in SlicerIGT extension)
iGyne (scripted, bundled in iGyne extension)
PlusRemote (scripted, bundled in SlicerIGT extension)

Informatics

tid1500writer (cli, bundled in DCMQI extension)
mpReviewPreprocessor (scripted, bundled in mpReview extension)
SEG2NRRD (cli)
TCIABrowser (scripted, bundled in TCIABrowser extension)
segimage2itkimage (cli, bundled in DCMQI extension)
mpReview (scripted, bundled in mpReview extension)
Tables (loadable, built-in)
Data (loadable, built-in)
DumpSEGFrame (cli)
tid1500reader (cli, bundled in DCMQI extension)
Terminologies (loadable, built-in)
Units (loadable, built-in)
DICOM (scripted, built-in)
SampleData (scripted, built-in)
Colors (loadable, built-in)
CurveMaker (scripted, bundled in CurveMaker extension)
Annotations (loadable, built-in)
Markups (loadable, built-in)
SubjectHierarchy (loadable, built-in)
QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)

Converters

itkimage2paramap (cli, bundled in DCMQI extension)
paramap2itkimage (cli, bundled in DCMQI extension)
itkimage2segimage (cli, bundled in DCMQI extension)
EncodeSEG (cli)

Legacy

Converters

BSplineToDeformationField (cli, built-in)

Filtering

OtsuThresholdImageFilter (cli, built-in)
ResampleScalarVolume (cli, built-in)

Registration

TestGridTransformRegistration (cli, built-in)
ExpertAutomatedRegistration (cli, built-in)

Work in Progress

Diffusion Tensor

Test

DiffusionTensorTest (cli, built-in)

Libraries

OpenCV (loadable, bundled in SlicerOpenCV extension)

Machine Learning

DeepInfer (scripted, bundled in DeepInfer extension)

Margin Calculator

MarginCalculator (scripted, bundled in MarginCalculator extension)
DoseMorphology (loadable, bundled in MarginCalculator extension)
SyntheticRTDose (scripted, bundled in MarginCalculator extension)

Mesh Generation

CleaverCLI (cli, bundled in CleaverExtension extension)

MeshGeneration

BodyCentricCubicMesh (cli, bundled in CBC_3D_I2MConversion extension)

Microscopy

IASEMImportSeries (cli, bundled in IASEM extension)
IASEMImport (cli, bundled in IASEM extension)
BinShrink (cli, bundled in IASEM extension)
LabelObjectStatistics (scripted, bundled in IASEM extension)
SpacingAwareCurvatureDiffusion (cli, bundled in IASEM extension)

MultiVolume Support

MultiVolumeImporter (scripted, built-in)
MultiVolumeExplorer (loadable, built-in)

Pathology

SlicerPathology (scripted, bundled in SlicerPathology extension)

Perk Tutor

PythonMetricsCalculator (scripted, bundled in PerkTutor extension)
TransformRecorder (loadable, bundled in PerkTutor extension)
PerkEvaluator (loadable, bundled in PerkTutor extension)
WorkflowSegmentation (loadable, bundled in PerkTutor extension)

Plastimatch

DicomSroExport (scripted, bundled in SlicerRT extension)
PlmRegister (scripted, bundled in SlicerRT extension)

Registration

plastimatch_slicer_bspline (cli, bundled in SlicerRT extension)
plastimatch_slicer_landwarp (cli, bundled in SlicerRT extension)

Utilities

PlastimatchPy (loadable, bundled in SlicerRT extension)

Quantification

DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
PETLiverUptakeMeasurement (cli, bundled in PETLiverUptakeMeasurement extension)
PETIndiC (scripted, bundled in PET-IndiC extension)
Q3DC (scripted, bundled in Q3DC extension)
HeterogeneityCAD (scripted, bundled in OpenCAD extension)
ShapeQuantifier (scripted, bundled in ShapeQuantifier extension)
QuantitativeIndicesCLI (cli, bundled in PET-IndiC extension)
PETStandardUptakeValueComputation (cli, built-in)
SUVFactorCalculator (cli, bundled in PETDICOMExtension extension)
SpinalCurvatureMeasurement (scripted, bundled in Scoliosis extension)
QuantitativeIndicesTool (scripted, bundled in PET-IndiC extension)
SegmentStatistics (scripted, built-in)
LabelStatistics (scripted, built-in)
MeshStatistics (scripted, bundled in MeshStatisticsExtension extension)
DWModeling (cli, bundled in SlicerProstate extension)
BRAINSLabelStats (cli, built-in)
PkModeling (cli, bundled in PkModeling extension)
PETSUVImageMaker (cli, bundled in LongitudinalPETCT extension)
DataProbe (scripted, built-in)
ModelToModelDistance (cli, bundled in ModelToModelDistance extension)
T1Mapping (cli, bundled in T1Mapping extension)
SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)
AnglePlanes (scripted, bundled in ShapeQuantifier extension)
dPetBrainQuantification (scripted, bundled in PetSpectAnalysis extension)
PickAndPaint (scripted, bundled in PickAndPaintExtension extension)
QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
DiceComputation (loadable, bundled in DiceComputation extension)

ChangeQuantification

IntensityDifferenceMetric (cli, bundled in ChangeTracker extension)

Radiology

SliceTracker (scripted, bundled in SliceTracker extension)
SliceTrackerRegistration (scripted, bundled in SliceTracker extension)
SliceTrackerZFrameRegistration (scripted, bundled in SliceTracker extension)

Radiotherapy

Beams (loadable, bundled in SlicerRT extension)
DvhComparison (scripted, bundled in SlicerRT extension)
DoseVolumeHistogram (loadable, bundled in SlicerRT extension)
DicomRtImportExport (loadable, bundled in SlicerRT extension)
DoseAccumulation (loadable, bundled in SlicerRT extension)
ExternalBeamPlanning (loadable, bundled in SlicerRT extension)
SegmentComparison (loadable, bundled in SlicerRT extension)
PlanarImage (loadable, bundled in SlicerRT extension)
Isodose (loadable, bundled in SlicerRT extension)
DoseComparison (loadable, bundled in SlicerRT extension)
SegmentMorphology (loadable, bundled in SlicerRT extension)
DicomSroImport (loadable, bundled in SlicerRT extension)

Registration

Transforms (loadable, built-in)
BRAINSResize (cli, built-in)
PerformMetricTest (cli, built-in)
LandmarkRegistration (scripted, built-in)
PBNRR (cli, bundled in PBNRR extension)
BRAINSResample (cli, built-in)
BRAINSFit (cli, built-in)

CMF Registration

ApplyMatrix (cli, bundled in CMFreg extension)
LabelExtraction (cli, bundled in CMFreg extension)
LabelAddition (cli, bundled in CMFreg extension)
Downsize (cli, bundled in CMFreg extension)
SurfaceRegistration (scripted, bundled in CMFreg extension)

Voxelbase Registration

NonGrowing (cli, bundled in CMFreg extension)
Growing (cli, bundled in CMFreg extension)
MaskCreation (cli, bundled in CMFreg extension)

Label Registration

DistanceMapBasedRegistration (scripted, bundled in SlicerProstate extension)

Specialized

ACPCTransform (cli, built-in)
FiducialRegistration (cli, built-in)
BRAINSDemonWarp (cli, built-in)
Reformat (loadable, built-in)
ScatteredTransform (cli, bundled in ScatteredTransform extension)
VBRAINSDemonWarp (cli, built-in)

Segmentation

ROBEXBrainExtraction (cli, bundled in ROBEXBrainExtraction extension)
EMSegmentQuick (loadable, built-in)
VolumeClipWithModel (scripted, bundled in VolumeClip extension)
ABC (cli, bundled in ABC extension)
VolumeClipToLabel (scripted, bundled in SliceTracker extension)
AirwaySegmentationCLI (cli, bundled in AirwaySegmentation extension)
LAScarSegmenter (cli, bundled in LAScarSegmenter extension)
SegmentEditor (scripted, built-in)
AirwaySegmentation (scripted, bundled in AirwaySegmentation extension)
SkullStripper (cli, bundled in SkullStripper extension)
SegmentEditorFastMarching (scripted, bundled in SegmentEditorExtraEffects extension)
SobolevSegmenter (cli, bundled in SobolevSegmenter extension)
VolumeClipWithRoi (scripted, bundled in VolumeClip extension)
SegmentCAD (scripted, bundled in OpenCAD extension)
SwissSkullStripper (cli, bundled in SwissSkullStripper extension)
SegmentEditorFloodFilling (scripted, bundled in SegmentEditorExtraEffects extension)
Wasp (scripted, bundled in Wasp extension)
Editor (scripted, built-in)
SimpleRegionGrowingSegmentation (cli, built-in)
EMSegment (loadable, built-in)
QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
IntensitySegmenter (cli, bundled in IntensitySegmenter extension)
SegmentEditorWatershed (scripted, bundled in SegmentEditorExtraEffects extension)

Specialized

BRAINSROIAuto (cli, built-in)
RobustStatisticsSegmenter (cli, built-in)
EMSegmentCommandLine (cli, built-in)

Sequences

Sequences (loadable, bundled in Sequences extension)
SequenceBrowser (loadable, bundled in Sequences extension)
MetafileImporter (loadable, bundled in Sequences extension)

Slicelets

FilmDosimetryAnalysis (scripted, bundled in FilmDosimetryAnalysis extension)
GelDosimetryAnalysis (scripted, bundled in GelDosimetryAnalysis extension)
GelDosimetryAnalysisAlgo (loadable, bundled in GelDosimetryAnalysis extension)

SlicerProstate

ZFrameCalibration (cli, bundled in SliceTracker extension)

Surface Models

SurfaceToolbox (scripted, built-in)
GrayscaleModelMaker (cli, built-in)
ModelMaker (cli, built-in)
ModelToLabelMap (cli, built-in)
MergeModels (cli, built-in)
EasyClip (scripted, bundled in EasyClip extension)
LabelMapSmoothing (cli, built-in)
MeshToLabelMap (cli, bundled in MeshToLabelMap extension)
ProbeVolumeWithModel (cli, built-in)
TextureModel (scripted, bundled in SlicerIGT extension)

TestCases

SEGExporterSelfTest

Testing

CLI4Test
ThresholdThreadingTest
ScoliosisMonitoring (scripted, bundled in Scoliosis extension)
SlicerMRBSaveRestoreCheckPathsTest
CLIROITest (cli, built-in)
PerformanceTests
SlicerMRBMultipleSaveRestoreTest
SlicerMRBTest
SEGExporterSelfTest
SelfTests
SlicerMRBMultipleSaveRestoreLoopTest

IGT Tests

BreachWarningSelfTest
WatchdogSelfTest

SlicerRT Tests

IGRTWorkflow_SelfTest
BatchStructureSetConversion (scripted, bundled in SlicerRT extension)

TestCases

AtlasTests
AddStorableDataAfterSceneViewTest
test_tractography_display
SlicerTransformInteractionTest1
RSNAQuantTutorial
NeurosurgicalPlanningTutorialMarkupsSelfTest
ChangeTrackerSelfTest
FiducialLayoutSwitchBug1914
GraphCutSegmentSelfTest
SlicerBoundsTest
UtilTest
Charting (scripted, built-in)
CardiacAgatstonMeasures (scripted, bundled in CardiacAgatstonMeasures extension)
fiber_visibility_crash2438
RSNAVisTutorial
JRC2013Vis
AddManyMarkupsFiducialTest
CropVolumeSelfTest
SliceLinkLogic (scripted, built-in)
VolumeRenderingSceneClose (scripted, built-in)
slicerCloseCrashBug2590
CLIEventTest
NsgPlanTracto (scripted, bundled in SlicerDMRI extension)
MarkupsWidgetsSelfTest
TablesSelfTest
SlicerOrientationSelectorTest
MarkupsInViewsSelfTest
TwoCLIsInParallelTest
SubjectHierarchyCorePluginsSelfTest
SubjectHierarchyGenericSelfTest
ScenePerformance (scripted, built-in)
MarkupsInCompareViewersSelfTest
sceneImport2428
RSNA2012ProstateDemo
DTINotReproducibleIssue3977
TwoCLIsInARowTest
ColorsScalarBarSelfTest
BRAINSFitRigidRegistrationCrashIssue4139
Slicer4Minute (scripted, built-in)
ViewControllersSliceInterpolationBug1926

Ultrasound

ScanConvertCurvilinearArray (cli, bundled in SlicerITKUltrasound extension)
ScanConvertPhasedArray3D (cli, bundled in SlicerITKUltrasound extension)
ScanConvertSliceSeries (cli, bundled in SlicerITKUltrasound extension)

Uncategorized

ShapeQuantifierCore (scripted, bundled in ShapeQuantifier extension)
DatabaseInteractorLib (scripted, bundled in DatabaseInteractor extension)

Utilities

ScreenCapture (scripted, built-in)
DataStore (loadable, built-in)
DICOMPatcher (scripted, built-in)
BRAINSStripRotation (cli, built-in)
EMSegmentTransformToNewFormat (cli, built-in)

BRAINS

BRAINSTransformConvert (cli, built-in)

Vascular Modeling Toolkit

CenterlineComputation (scripted, bundled in VMTK extension)
LevelSetSegmentation (scripted, bundled in VMTK extension)
VesselnessFiltering (scripted, bundled in VMTK extension)

Virtual Reality

VirtualReality (loadable, bundled in SlicerVirtualReality extension)

Web System Tools

DatabaseInteractor (scripted, bundled in DatabaseInteractor extension)

Wizards

CompareVolumes (scripted, built-in)
ChangeTracker (scripted, bundled in ChangeTracker extension)

XNATSlicer

XnatSlicer (scripted, bundled in XNATSlicer extension)

Modules by name

367 modules:

ABC (cli, bundled in ABC extension)
ACPCTransform (cli, built-in)
AddScalarVolumes (cli, built-in)
AirwayInspector (loadable, bundled in Chest_Imaging_Platform extension)
AirwaySegmentation (scripted, bundled in AirwaySegmentation extension)
AirwaySegmentationCLI (cli, bundled in AirwaySegmentation extension)
AnglePlanes (scripted, bundled in ShapeQuantifier extension)
Annotations (loadable, built-in)
ApplyMatrix (cli, bundled in CMFreg extension)
AstroMasking (loadable, bundled in SlicerAstro extension)
AstroModeling (loadable, bundled in SlicerAstro extension)
AstroMomentMaps (loadable, bundled in SlicerAstro extension)
AstroProfiles (loadable, bundled in SlicerAstro extension)
AstroPVDiagram (loadable, bundled in SlicerAstro extension)
AstroPVSlice (loadable, bundled in SlicerAstro extension)
AstroReproject (loadable, bundled in SlicerAstro extension)
AstroSampleData (scripted, bundled in SlicerAstro extension)
AstroSmoothing (loadable, bundled in SlicerAstro extension)
AstroStatistics (loadable, bundled in SlicerAstro extension)
AstroVolume (loadable, bundled in SlicerAstro extension)
AstroWelcome (loadable, bundled in SlicerAstro extension)
Beams (loadable, bundled in SlicerRT extension)
BinShrink (cli, bundled in IASEM extension)
BlendVectorVolumes (cli, bundled in OpenCVExample extension)
BodyCentricCubicMesh (cli, bundled in CBC_3D_I2MConversion extension)
BRAINSDemonWarp (cli, built-in)
BRAINSDWICleanup (cli, built-in)
BRAINSFit (cli, built-in)
BRAINSLabelStats (cli, built-in)
BRAINSResample (cli, built-in)
BRAINSResize (cli, built-in)
BRAINSROIAuto (cli, built-in)
BRAINSStripRotation (cli, built-in)
BRAINSTransformConvert (cli, built-in)
BreachWarning (loadable, bundled in SlicerIGT extension)
CarreraSlice (loadable, bundled in CarreraSlice extension)
CastScalarVolume (cli, built-in)
CenterlineComputation (scripted, bundled in VMTK extension)
ChangeTracker (scripted, bundled in ChangeTracker extension)
CheckerBoardFilter (cli, built-in)
CIP_ (scripted, bundled in Chest_Imaging_Platform extension)
CIP_BodyComposition (scripted, bundled in Chest_Imaging_Platform extension)
CIP_CalciumScoring (scripted, bundled in Chest_Imaging_Platform extension)
CIP_Common (scripted, bundled in Chest_Imaging_Platform extension)
CIP_InteractiveLobeSegmentation (scripted, bundled in Chest_Imaging_Platform extension)
CIP_LesionModel (scripted, bundled in Chest_Imaging_Platform extension)
CIP_MIPViewer (scripted, bundled in Chest_Imaging_Platform extension)
CIP_PAARatio (scripted, bundled in Chest_Imaging_Platform extension)
CIP_ParenchymaAnalysis (scripted, bundled in Chest_Imaging_Platform extension)
CIP_ParenchymaSubtypeTraining (scripted, bundled in Chest_Imaging_Platform extension)
CIP_PointsLabelling (scripted, bundled in Chest_Imaging_Platform extension)
CIP_TracheaStentPlanning (scripted, bundled in Chest_Imaging_Platform extension)
ClassifyFissureParticles (cli, bundled in Chest_Imaging_Platform extension)
CleaverCLI (cli, bundled in CleaverExtension extension)
CMRToolkitAutomaticLeftAtrialScar (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitAxialDilate (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitBooleanREMOVEFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitConnectedThresholdFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitInhomogeneityCorrection (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitIsolatedConnectedFilter (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitLASegmentationGraphCuts (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitPVAntrumCut (cli, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitRegistration (scripted, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitRegistrationBRAINSFit (scripted, bundled in Cardiac_MRI_Toolkit extension)
CMRToolkitWizard (scripted, bundled in Cardiac_MRI_Toolkit extension)
CollectFiducials (loadable, bundled in SlicerIGT extension)
Colors (loadable, built-in)
CompareVolumes (scripted, built-in)
ComputeCrossSectionalArea (cli, bundled in Chest_Imaging_Platform extension)
ComputeDistanceMap (cli, bundled in Chest_Imaging_Platform extension)
ComputeFeatureStrength (cli, bundled in Chest_Imaging_Platform extension)
ComputeFissureFeatureVectors (cli, bundled in Chest_Imaging_Platform extension)
ComputeIntensityStatistics (cli, bundled in Chest_Imaging_Platform extension)
ConvertChestRegionChestTypeToLabelMapValue (cli, bundled in Chest_Imaging_Platform extension)
ConvertDicom (cli, bundled in Chest_Imaging_Platform extension)
ConvertLabelMapValueToChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
ConvertVTK (cli, bundled in UKFTractography extension)
CornerAnnotation (scripted, bundled in CornerAnnotation extension)
CreateDICOMSeries (cli, built-in)
CreateModels (loadable, bundled in SlicerIGT extension)
CropLung (cli, bundled in Chest_Imaging_Platform extension)
CropVolume (loadable, built-in)
CurvatureAnisotropicDiffusion (cli, built-in)
CurveMaker (scripted, bundled in CurveMaker extension)
Data (loadable, built-in)
DatabaseInteractor (scripted, bundled in DatabaseInteractor extension)
DatabaseInteractorLib (scripted, bundled in DatabaseInteractor extension)
DataProbe (scripted, built-in)
DataStore (loadable, built-in)
DeepInfer (scripted, bundled in DeepInfer extension)
DiceComputation (loadable, bundled in DiceComputation extension)
DICOM (scripted, built-in)
DICOM2FullBrainTractography (scripted, bundled in SlicerDMRI extension)
DICOMPatcher (scripted, built-in)
DicomRtImportExport (loadable, bundled in SlicerRT extension)
DicomSroExport (scripted, bundled in SlicerRT extension)
DicomSroImport (loadable, bundled in SlicerRT extension)
DICOMTract_to_VTK (cli, bundled in SlicerDMRI extension)
DiffusionTensorScalarMeasurements (cli, bundled in SlicerDMRI extension)
DiffusionWeightedVolumeMasking (cli, bundled in SlicerDMRI extension)
DistanceMapBasedRegistration (scripted, bundled in SlicerProstate extension)
DMRIInstall (scripted, built-in)
DoseAccumulation (loadable, bundled in SlicerRT extension)
DoseComparison (loadable, bundled in SlicerRT extension)
DoseMorphology (loadable, bundled in MarginCalculator extension)
DoseVolumeHistogram (loadable, bundled in SlicerRT extension)
Downsize (cli, bundled in CMFreg extension)
dPetBrainQuantification (scripted, bundled in PetSpectAnalysis extension)
DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
DumpSEGFrame (cli)
DvhComparison (scripted, bundled in SlicerRT extension)
DWIConvert (cli, built-in)
DWIToDTIEstimation (cli, bundled in SlicerDMRI extension)
DWModeling (cli, bundled in SlicerProstate extension)
EasyClip (scripted, bundled in EasyClip extension)
Editor (scripted, built-in)
EMSegment (loadable, built-in)
EMSegmentCommandLine (cli, built-in)
EMSegmentQuick (loadable, built-in)
EMSegmentTransformToNewFormat (cli, built-in)
EncodeSEG (cli)
Endoscopy (scripted, built-in)
EnhanceFissuresInImage (cli, bundled in Chest_Imaging_Platform extension)
EvaluateLungLobeSegmentationResults (cli, bundled in Chest_Imaging_Platform extension)
ExecuteSystemCommand (cli, bundled in Chest_Imaging_Platform extension)
ExternalBeamPlanning (loadable, bundled in SlicerRT extension)
ExtractChestLabelMap (cli, bundled in Chest_Imaging_Platform extension)
ExtractFissureBoundaryFromLobeMap (cli, bundled in Chest_Imaging_Platform extension)
ExtractParticlesFromChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
ExtractSkeleton (cli, built-in)
FastGrowCut (loadable, bundled in FastGrowCutEffect extension)
FastGrowCutSegmenter (loadable, bundled in CarreraSlice extension)
FiberBundleLabelSelect (cli, bundled in SlicerDMRI extension)
FiberBundleToLabelMap (scripted, bundled in SlicerDMRI extension)
FiberTractMeasurements (cli, bundled in SlicerDMRI extension)
FiducialRegistration (cli, built-in)
FiducialRegistrationWizard (loadable, bundled in SlicerIGT extension)
FiducialsToModelRegistration (scripted, bundled in SlicerIGT extension)
FilmDosimetryAnalysis (scripted, bundled in FilmDosimetryAnalysis extension)
FilterAirwayParticleData (cli, bundled in Chest_Imaging_Platform extension)
FilterConnectedComponents (cli, bundled in Chest_Imaging_Platform extension)
FilterFissureParticleData (cli, bundled in Chest_Imaging_Platform extension)
FilterVesselParticleData (cli, bundled in Chest_Imaging_Platform extension)
FindPatchMatch (cli, bundled in Chest_Imaging_Platform extension)
FitLobeSurfaceModelsToParticleData (cli, bundled in Chest_Imaging_Platform extension)
GaussianBlurImageFilter (cli, built-in)
GelDosimetryAnalysis (scripted, bundled in GelDosimetryAnalysis extension)
GelDosimetryAnalysisAlgo (loadable, bundled in GelDosimetryAnalysis extension)
GenerateAtlasConvexHull (cli, bundled in Chest_Imaging_Platform extension)
GenerateBinaryThinning3D (cli, bundled in Chest_Imaging_Platform extension)
GenerateDistanceMapFromLabelMap (cli, bundled in Chest_Imaging_Platform extension)
GenerateImageSubVolumes (cli, bundled in Chest_Imaging_Platform extension)
GenerateLesionSegmentation (cli, bundled in Chest_Imaging_Platform extension)
GenerateLobeSurfaceModels (cli, bundled in Chest_Imaging_Platform extension)
GenerateMedianFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
GenerateModel (cli, bundled in Chest_Imaging_Platform extension)
GenerateNLMFilteredImage (cli, bundled in Chest_Imaging_Platform extension)
GenerateOtsuLungCast (cli, bundled in Chest_Imaging_Platform extension)
GenerateOverlayImages (cli, bundled in Chest_Imaging_Platform extension)
GenerateParenchymaPhenotypes (cli, bundled in Chest_Imaging_Platform extension)
GeneratePartialLungLabelMap (cli, bundled in Chest_Imaging_Platform extension)
GenerateSimpleLungMask (cli, bundled in Chest_Imaging_Platform extension)
GenerateStenciledLabelMapFromParticles (cli, bundled in Chest_Imaging_Platform extension)
GetStructuresInLabelMap (cli, bundled in Chest_Imaging_Platform extension)
GetTransformationKappa (cli, bundled in Chest_Imaging_Platform extension)
GetTransformationKappa2D (cli, bundled in Chest_Imaging_Platform extension)
GetTransformationSimilarityMetric (cli, bundled in Chest_Imaging_Platform extension)
GradientAnisotropicDiffusion (cli, built-in)
GraphCutInteractiveSegmenter (loadable, bundled in GraphCutSegment extension)
GraphCutsOptimization (cli, bundled in Chest_Imaging_Platform extension)
GrayscaleFillHoleImageFilter (cli, built-in)
GrayscaleGrindPeakImageFilter (cli, built-in)
GrayscaleModelMaker (cli, built-in)
Growing (cli, bundled in CMFreg extension)
GyroGuide (scripted, bundled in GyroGuide extension)
HeterogeneityCAD (scripted, bundled in OpenCAD extension)
HistogramMatching (cli, built-in)
IASEMImport (cli, bundled in IASEM extension)
IASEMImportSeries (cli, bundled in IASEM extension)
iGyne (scripted, bundled in iGyne extension)
ImageLabelCombine (cli, built-in)
IntensityDifferenceMetric (cli, bundled in ChangeTracker extension)
IntensitySegmenter (cli, bundled in IntensitySegmenter extension)
IslandRemoval (cli, built-in)
Isodose (loadable, bundled in SlicerRT extension)
itkimage2paramap (cli, bundled in DCMQI extension)
itkimage2segimage (cli, bundled in DCMQI extension)
KUtil (scripted, bundled in CarreraSlice extension)
LabelAddition (cli, bundled in CMFreg extension)
LabelExtraction (cli, bundled in CMFreg extension)
LabelMapFromRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
LabelMapSmoothing (cli, built-in)
LabelObjectStatistics (scripted, bundled in IASEM extension)
LabelParticlesByChestRegionChestType (cli, bundled in Chest_Imaging_Platform extension)
LabelStatistics (scripted, built-in)
LandmarkRegistration (scripted, built-in)
LAScarSegmenter (cli, bundled in LAScarSegmenter extension)
LASegmentationWorkflow (scripted, bundled in Cardiac_MRI_Toolkit extension)
LevelSetSegmentation (scripted, bundled in VMTK extension)
MarginCalculator (scripted, bundled in MarginCalculator extension)
Markups (loadable, built-in)
MarkupsToModel (loadable, bundled in SlicerIGT extension)
MaskCreation (cli, bundled in CMFreg extension)
MaskOutLabelMapStructures (cli, bundled in Chest_Imaging_Platform extension)
MaskScalarVolume (cli, built-in)
MedianImageFilter (cli, built-in)
MergeChestLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
MergeModels (cli, built-in)
MergeParticleDataSets (cli, bundled in Chest_Imaging_Platform extension)
MeshStatistics (scripted, bundled in MeshStatisticsExtension extension)
MeshToLabelMap (cli, bundled in MeshToLabelMap extension)
MetafileImporter (loadable, bundled in Sequences extension)
ModelMaker (cli, built-in)
ModelRegistration (scripted, bundled in SlicerIGT extension)
Models (loadable, built-in)
ModelToLabelMap (cli, built-in)
ModelToModelDistance (cli, bundled in ModelToModelDistance extension)
mpReview (scripted, bundled in mpReview extension)
mpReviewPreprocessor (scripted, bundled in mpReview extension)
MultiplyScalarVolumes (cli, built-in)
MultiVolumeExplorer (loadable, built-in)
MultiVolumeImporter (scripted, built-in)
N4ITKBiasFieldCorrection (cli, built-in)
NeedleFinder (scripted, bundled in NeedleFinder extension)
NonGrowing (cli, bundled in CMFreg extension)
OpenCV (loadable, bundled in SlicerOpenCV extension)
OpenIGTLinkIF (loadable, built-in)
OpenIGTLinkRemote (loadable, bundled in SlicerIGT extension)
OrientScalarVolume (cli, built-in)
paramap2itkimage (cli, bundled in DCMQI extension)
ParticlesDisplay (loadable, bundled in Chest_Imaging_Platform extension)
PathExplorer (loadable, bundled in SlicerIGT extension)
PBNRR (cli, bundled in PBNRR extension)
PerformMetricTest (cli, built-in)
PerformMorphological (cli, bundled in Chest_Imaging_Platform extension)
PerkEvaluator (loadable, bundled in PerkTutor extension)
PerturbParticles (cli, bundled in Chest_Imaging_Platform extension)
PETIndiC (scripted, bundled in PET-IndiC extension)
PETLiverUptakeMeasurement (cli, bundled in PETLiverUptakeMeasurement extension)
PETStandardUptakeValueComputation (cli, built-in)
PETSUVImageMaker (cli, bundled in LongitudinalPETCT extension)
PETTumorSegmentation (loadable, bundled in PETTumorSegmentation extension)
Philips4dUsDicomPatcher (scripted, bundled in SlicerHeart extension)
PickAndPaint (scripted, bundled in PickAndPaintExtension extension)
PivotCalibration (loadable, bundled in SlicerIGT extension)
PkModeling (cli, bundled in PkModeling extension)
PlanarImage (loadable, bundled in SlicerRT extension)
plastimatch_slicer_bspline (cli, bundled in SlicerRT extension)
plastimatch_slicer_landwarp (cli, bundled in SlicerRT extension)
PlastimatchPy (loadable, bundled in SlicerRT extension)
PlmRegister (scripted, bundled in SlicerRT extension)
PlusModelCatalogBrowser (scripted, bundled in SlicerIGT extension)
PlusRemote (scripted, bundled in SlicerIGT extension)
ProbeVolumeWithModel (cli, built-in)
PythonMetricsCalculator (scripted, bundled in PerkTutor extension)
Q3DC (scripted, bundled in Q3DC extension)
QuadEdgeSurfaceMesher (cli, bundled in SlicerProstate extension)
QualityControl (cli, bundled in Chest_Imaging_Platform extension)
QuantitativeIndicesCLI (cli, bundled in PET-IndiC extension)
QuantitativeIndicesTool (scripted, bundled in PET-IndiC extension)
QuantitativeReporting (scripted, bundled in QuantitativeReporting extension)
QuickTCGA (loadable, bundled in SlicerPathology extension)
ReadDicomWriteTags (cli, bundled in Chest_Imaging_Platform extension)
ReadNRRDsWriteVTK (cli, bundled in Chest_Imaging_Platform extension)
ReadVidaWriteCIP (cli, bundled in Chest_Imaging_Platform extension)
ReadVTKWriteNRRDs (cli, bundled in Chest_Imaging_Platform extension)
ReadWriteImageData (cli, bundled in Chest_Imaging_Platform extension)
ReadWriteRegionAndTypePoints (cli, bundled in Chest_Imaging_Platform extension)
Reformat (loadable, built-in)
RegionType (loadable, bundled in Chest_Imaging_Platform extension)
RegionTypeLocationsToROIVolume (cli, bundled in Chest_Imaging_Platform extension)
RegisterCT (cli, bundled in Chest_Imaging_Platform extension)
RegisterLabelMaps (cli, bundled in Chest_Imaging_Platform extension)
RegisterLungAtlas (cli, bundled in Chest_Imaging_Platform extension)
RemapLabelMap (cli, bundled in Chest_Imaging_Platform extension)
RemoveChestTypeFromLabelMapUsingParticles (cli, bundled in Chest_Imaging_Platform extension)
RemoveParticlesFromParticlesDataSet (cli, bundled in Chest_Imaging_Platform extension)
ResampleCT (cli, bundled in Chest_Imaging_Platform extension)
ResampleDTIlogEuclidean (cli, bundled in ResampleDTIlogEuclidean extension)
ResampleDTIVolume (cli, built-in)
ResampleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
ResampleScalarVectorDWIVolume (cli, built-in)
RescaleLabelMap (cli, bundled in Chest_Imaging_Platform extension)
ResectionVolume (scripted, bundled in ResectionPlanner extension)
ROBEXBrainExtraction (cli, bundled in ROBEXBrainExtraction extension)
RobustStatisticsSegmenter (cli, built-in)
SampleData (scripted, built-in)
ScanConvertCurvilinearArray (cli, bundled in SlicerITKUltrasound extension)
ScanConvertPhasedArray3D (cli, bundled in SlicerITKUltrasound extension)
ScanConvertSliceSeries (cli, bundled in SlicerITKUltrasound extension)
ScarVisualization (scripted, bundled in Cardiac_MRI_Toolkit extension)
ScatteredTransform (cli, bundled in ScatteredTransform extension)
SceneViews (loadable, built-in)
ScreenCapture (scripted, built-in)
SEG2NRRD (cli)
segimage2itkimage (cli, bundled in DCMQI extension)
Segmentations (loadable, built-in)
SegmentationSmoothing (cli, bundled in SlicerProstate extension)
SegmentCAD (scripted, bundled in OpenCAD extension)
SegmentComparison (loadable, bundled in SlicerRT extension)
SegmentEditor (scripted, built-in)
SegmentEditorFastMarching (scripted, bundled in SegmentEditorExtraEffects extension)
SegmentEditorFloodFilling (scripted, bundled in SegmentEditorExtraEffects extension)
SegmentEditorWatershed (scripted, bundled in SegmentEditorExtraEffects extension)
SegmentLungAirways (cli, bundled in Chest_Imaging_Platform extension)
SegmentLungLobes (cli, bundled in Chest_Imaging_Platform extension)
SegmentMorphology (loadable, bundled in SlicerRT extension)
SegmentStatistics (scripted, built-in)
SequenceBrowser (loadable, bundled in Sequences extension)
Sequences (loadable, bundled in Sequences extension)
ShapeQuantifier (scripted, bundled in ShapeQuantifier extension)
ShapeQuantifierCore (scripted, bundled in ShapeQuantifier extension)
ShortCutCore (loadable, bundled in SlicerPathology extension)
SimpleFilters (scripted, built-in)
SimpleRegionGrowingSegmentation (cli, built-in)
SkullStripper (cli, bundled in SkullStripper extension)
SlicerAstroDataProbe (scripted, bundled in SlicerAstro extension)
SlicerPathology (scripted, bundled in SlicerPathology extension)
SlicerToKiwiExporter (scripted, bundled in SlicerToKiwiExporter extension)
SliceTracker (scripted, bundled in SliceTracker extension)
SliceTrackerRegistration (scripted, bundled in SliceTracker extension)
SliceTrackerZFrameRegistration (scripted, bundled in SliceTracker extension)
SobolevSegmenter (cli, bundled in SobolevSegmenter extension)
SpacingAwareCurvatureDiffusion (cli, bundled in IASEM extension)
SpinalCurvatureMeasurement (scripted, bundled in Scoliosis extension)
SplitLeftLungRightLung (cli, bundled in Chest_Imaging_Platform extension)
SubjectHierarchy (loadable, built-in)
SubtractScalarVolumes (cli, built-in)
SurfaceRegistration (scripted, bundled in CMFreg extension)
SurfaceToolbox (scripted, built-in)
SUVFactorCalculator (cli, bundled in PETDICOMExtension extension)
SwissSkullStripper (cli, bundled in SwissSkullStripper extension)
SyntheticRTDose (scripted, bundled in MarginCalculator extension)
T1Mapping (cli, bundled in T1Mapping extension)
Tables (loadable, built-in)
TCIABrowser (scripted, bundled in TCIABrowser extension)
Terminologies (loadable, built-in)
TextureModel (scripted, bundled in SlicerIGT extension)
ThresholdScalarVolume (cli, built-in)
tid1500reader (cli, bundled in DCMQI extension)
tid1500writer (cli, bundled in DCMQI extension)
TrackerStabilizer (loadable, bundled in TrackerStabilizer extension)
TractographyDisplay (loadable, bundled in SlicerDMRI extension)
TractographyInteractiveSeeding (loadable, bundled in SlicerDMRI extension)
TractographyLabelMapSeeding (cli, bundled in SlicerDMRI extension)
TransferRegionAndTypeIndicesToFromPoints (cli, bundled in Chest_Imaging_Platform extension)
TransformFusion (loadable, bundled in SlicerIGT extension)
TransformRecorder (loadable, bundled in PerkTutor extension)
Transforms (loadable, built-in)
UKFTractography (cli, bundled in UKFTractography extension)
UltrasoundSnapshots (loadable, bundled in SlicerIGT extension)
Units (loadable, built-in)
ValveView (scripted, bundled in SlicerHeart extension)
VBRAINSDemonWarp (cli, built-in)
VectorToScalarVolume (scripted, built-in)
VesselnessFiltering (scripted, bundled in VMTK extension)
VffFileReader (loadable, bundled in SlicerRT extension)
ViewControllers (loadable, built-in)
Viewpoint (scripted, bundled in SlicerIGT extension)
VirtualReality (loadable, bundled in SlicerVirtualReality extension)
VolumeClipToLabel (scripted, bundled in SliceTracker extension)
VolumeClipWithModel (scripted, bundled in VolumeClip extension)
VolumeClipWithRoi (scripted, bundled in VolumeClip extension)
VolumeRendering (loadable, built-in)
VolumeResliceDriver (loadable, bundled in SlicerIGT extension)
Volumes (loadable, built-in)
VotingBinaryHoleFillingImageFilter (cli, built-in)
VTK_to_DICOMTract (cli, bundled in SlicerDMRI extension)
Wasp (scripted, bundled in Wasp extension)
Watchdog (loadable, bundled in SlicerIGT extension)
Welcome (loadable, built-in)
WindowLevelEffect (scripted, bundled in WindowLevelEffect extension)
WorkflowSegmentation (loadable, bundled in PerkTutor extension)
XnatSlicer (scripted, bundled in XNATSlicer extension)
ZFrameCalibration (cli, bundled in SliceTracker extension)

@@ Line 1: / Line 1: @@
 <noinclude>{{documentation/versioncheck}}</noinclude>
-=Modules by Category=
-==Core Modules==
-{{documentation/{{documentation/version}}/Developers/random-image}}
+{{:Documentation/{{documentation/version}}/ModuleExtensionListing}}
-*[[Documentation/{{documentation/version}}/Modules/Annotations|Annotations]] (Nicole Aucoin)
-*[[Documentation/{{documentation/version}}/Modules/Colors|Colors]] (Nicole Aucoin)
-*[[Documentation/{{documentation/version}}/Modules/Data|Data]] (Julien Finet)
-*[[Documentation/{{documentation/version}}/Modules/DICOM|DICOM]] (Steve Pieper)
-*[[Documentation/{{documentation/version}}/Modules/Editor|Editor]] (Steve Pieper)
-**[[Documentation/{{documentation/version}}/Modules/Editor/WatershedFromMarkers|WatershedFromMarkers]] (Bradley Lowekamp) {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/Markups|Markups]] (Nicole Aucoin)
-*[[Documentation/{{documentation/version}}/Modules/Models|Models]] (Nicole Aucoin)
-*[[Documentation/{{documentation/version}}/Modules/SceneViews|SceneViews]] (Nicole Aucoin)
-*[[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]] (Alex Yarmarkovich)
-*[[Documentation/{{documentation/version}}/Modules/ViewControllers|View Controllers]] (Jim Miller)
-*[[Documentation/{{documentation/version}}/Modules/Volumes|Volumes]] (Steve Pieper)
-*[[Documentation/{{documentation/version}}/Modules/VolumeRendering|Volume Rendering]] (Julien Finet)
-*[[Documentation/{{documentation/version}}/Modules/SlicerWelcome|Welcome to Slicer]] (Wendy Plesniak)
-==Wizards==
-==Informatics==
-*[[Documentation/{{documentation/version}}/Modules/DataStore|Data Store]] (Charles Marion)
-*[[Documentation/{{documentation/version}}/Modules/SampleData|Sample Data]] (Steve Pieper)
-==Registration==
-*[[:Category:Documentation/{{documentation/version}}/Modules/Registration|Introduction to Registration]] (Dominik Meier)
-*[[Documentation/{{documentation/version}}/Modules/BRAINSFit|General Brainsfit Registration]] (Hans Johnson)
-*[[Documentation/{{documentation/version}}/Modules/BRAINSResample|Resample Image (BRAINS)]] (Hans Johnson)
-*Specialized
-**[[Documentation/{{documentation/version}}/Modules/ACPCTransform|ACPC Transform]] (Nicole Aucoin)
-**[[Documentation/{{documentation/version}}/Modules/BRAINSDemonWarp|Demon Registration (BRAINS)]] (Hans Johnson)
-**[[Documentation/{{documentation/version}}/Modules/FiducialRegistration|Fiducial Registration]] (Stephen Aylward) {{wip}}
-**Vector Demon Registration (Hans Johnson)
-**[[Documentation/{{documentation/version}}/Modules/Reformat|Reformat]] (Michael Jeulin-Lagarrigue)
-**[[Documentation/{{documentation/version}}/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]] (Yi Gao) {{wip}}
-==Segmentation==
-*[[Documentation/{{documentation/version}}/Modules/EMSegment Easy|EMSegment Easy (no atlas)]] (Kilian Pohl)
-*[[Documentation/{{documentation/version}}/Modules/EMSegmenter|EMSegment (with atlas)]] (Kilian Pohl)
-*[[Documentation/{{documentation/version}}/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] (Jim Miller, Harini Veeraraghavan)
-*[[Documentation/{{documentation/version}}/Modules/KSliceInteractiveSegmenter|KSlice Interactive Segmenter]] (Ivan Kolesov, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )
-*[[Documentation/{{documentation/version}}/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice Interactive Segmenter]] (Ivan Kolesov, LiangJia Zhu, Yi Gao, Peter Karasev, Patricio Vela, Allen Tannenbaum, Karl Fritscher, Steve Pieper )
-*[[Documentation/{{documentation/version}}/Modules/Editor|Editor]] (Steve Pieper)
-*Specialized
-**[[Documentation/{{documentation/version}}/Modules/EMSegment Command-line | EMSegment Command-line]] (Kilian Pohl)
-**[[Documentation/{{documentation/version}}/Modules/ForegroundMasking|Foreground Masking (BRAINS)]] (Hans Johnson)
-**[[Documentation/{{documentation/version}}/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] (Yi Gao)
-**[[Documentation/{{documentation/version}}/Modules/LAScarSegmenter|Left Atrial Scar Segmenter]] (Liangjia Zhu)
-**[[Documentation/{{documentation/version}}/Modules/LASegmenter|Left Atrium Segmenter]] (Liangjia Zhu)
-==Quantification==
-*[[Documentation/{{documentation/version}}/Modules/DataProbe|Data Probe]] (Steve Pieper)
-*[[Documentation/{{documentation/version}}/Modules/LabelStatistics|Label Statistics]] (Steve Pieper)
-*[[Documentation/{{documentation/version}}/Modules/PETStandardUptakeValueComputation|PET Standard Uptake Value Computation]] (Nicole Aucoin)
-*[[Documentation/{{documentation/version}}/Modules/SNR Measurement|SNR Measurement]] (Babak Matinfar)
-==Diffusion==
-*DWI to Full Brain Tractography (Demian Wasserman) {{wip}}
-*Denoising
-**[[Documentation/{{documentation/version}}/Modules/DWIJointRicianLMMSEFilter|DWI Joint Rician LMMSE Image Filter]] (Demian Wasserman) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/DWIRicianLMMSEFilter|DWI Rician LMMSE Filter]] (Demian Wasserman) {{wip}}
-*Tractography
-**[[Documentation/{{documentation/version}}/Modules/TractographyDisplay|Tractography Display]] (Demian Wasserman) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/TractographyFiducialSeeding|Tractography Interactive Seeding]] (Alex Yarmarkovich)
-**[[Documentation/{{documentation/version}}/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]] (Demian Wasserman) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/UKFTractography|UKF Tractography]]
-*Utilities
-**[[Documentation/{{documentation/version}}/Modules/DWIToDTIEstimation|DWI To DTI Estimation]] (Demian Wasserman) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]] (Demian Wasserman)
-**[[Documentation/{{documentation/version}}/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]] (Demian Wasserman) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/ResampleDTIVolume|Resample DTI Volume]] (Demian Wasserman) {{wip}}
-*Data Conversion
-**[[Documentation/{{documentation/version}}/Modules/DTIImport|DTIImport]] {{wip}} (Sonia Pujol)
-**[[Documentation/{{documentation/version}}/Modules/DTIExport|DTIExport]] {{wip}} (Sonia Pujol)
-**[[Documentation/{{documentation/version}}/Modules/FiberBundleToLabelMap|Fiber Bundle to Label Map]] (Steve Pieper)
-==IGT==
-*[[Documentation/{{documentation/version}}/Modules/OpenIGTLinkIF| OpenIGTLink IF]] (Junichi Tokuda) {{wip}}
-==Filtering==
-*[[Documentation/{{documentation/version}}/Modules/N4ITKBiasFieldCorrection | N4ITK Bias Field Correction]] (Andrey Fedorov)
-*[[Documentation/{{documentation/version}}/Modules/CheckerBoardFilter|CheckerBoard Filter]] (Jim Miller) {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/ExtractSkeleton|Extract Skeleton]] (Jim Miller) {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/HistogramMatching|Histogram Matching]] (Jim Miller) {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/ImageLabelCombine|Image Label Combine]] (Alex Yarmarkovich)
-*[[Documentation/{{documentation/version}}/Modules/ResampleScalarVectorDWIVolume|Resample Scalar/Vector/DWI Volume]] (Francois Budin) {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/ThresholdScalarVolume|Threshold Scalar Volume]] (Nicole Aucoin)
-*[[Documentation/{{documentation/version}}/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] (Jim Miller) {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/SimpleFilters|Simple Filters]] (Bradley Lowekamp) {{wip}}
-*Arithmetic
-**[[Documentation/{{documentation/version}}/Modules/AddScalarVolumes|Add Scalar Volumes]] (Jim Miller) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/CastScalarVolume| Cast Scalar Volume]] (Nicole Aucoin)
-**[[Documentation/{{documentation/version}}/Modules/MaskScalarVolume| Mask Scalar Volume]] (Nicole Aucoin)
-**[[Documentation/{{documentation/version}}/Modules/MultiplyScalarVolumes| Multiply Scalar Volumes]] (Jim Miller) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/SubtractScalarVolumes| Subtract Scalar Volumes]] (Jim Miller) {{wip}}
-*Denoising
-**[[Documentation/{{documentation/version}}/Modules/GradientAnisotropicDiffusion |Gradient Anisotropic Diffusion]] (Jim Miller) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] (Jim Miller) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] (Stephen Aylward) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/MedianImageFilter|Median Image Filter]] (Jim Miller) {{wip}}
-*Morphology
-**[[Documentation/{{documentation/version}}/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] (Jim Miller)
-**[[Documentation/{{documentation/version}}/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]] (Jim Miller) {{wip}}
-==Surface Models==
-*[[Documentation/{{documentation/version}}/Modules/GrayscaleModelMaker| Grayscale Model Maker]] (Jim Miller) {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/LabelMapSmoothing|Label Map Smoothing]] {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/MergeModels| Merge Models]] (Nicole Aucoin)
-*[[Documentation/{{documentation/version}}/Modules/ModelMaker| Model Maker]] (Nicole Aucoin)
-*[[Documentation/{{documentation/version}}/Modules/ModelToLabelMap| Model To LabelMap]] (Nicole Aucoin)
-*[[Documentation/{{documentation/version}}/Modules/ProbeVolumeWithModel| Probe Volume With Model]] (Lauren O'Donnell) {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/SurfaceToolbox| SurfaceToolbox]] (Luca Antiga)
-==Converters==
-*[[Documentation/{{documentation/version}}/Modules/CreateDICOMSeries|Create DICOM Series]] (Jim Miller) {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/Crop Volume|Crop Volume]] (Andrey Fedorov)
-*[[Documentation/{{documentation/version}}/Modules/DicomToNrrdConverter|Dicom to Nrrd Converter]] (Jim Miller)
-*[[Documentation/{{documentation/version}}/Modules/OrientScalarVolume| Orient Scalar Volume]] (Jim Miller)
-*[[Documentation/{{documentation/version}}/Modules/VectorToScalarVolume| Vector to Scalar Volume]] (Steve Pieper)
-{{wip}}
-==Endoscopy==
-*[[Documentation/{{documentation/version}}/Modules/Endoscopy|Endoscopy]] (Steve Pieper)
-=={{wip}} Work in Progress {{wip}}==
-* MultiVolume Support
-**[[Documentation/{{documentation/version}}/Modules/MultiVolumeImporter|MultiVolume Importer]] (Andrey Fedorov)
-**[[Documentation/{{documentation/version}}/Modules/MultiVolumeExplorer|MultiVolume Explorer]] (Andrey Fedorov)
-==Developer Tools==
-*[[Documentation/{{documentation/version}}/Modules/Cameras|Cameras]] (Julien Finet) {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/EventBroker|Event Broker]] (Julien Finet) {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/ExecutionModelTour |Execution Model Tour]] (JC Fillion-Robin)  {{wip}}
-*[[Documentation/{{documentation/version}}/Modules/YOURMODULENAME|Module Template]] (JC Fillion-Robin)
-*Performance Tests
-*Tractography
-==Legacy==
-*Converters
-**[[Documentation/{{documentation/version}}/Modules/BSplineToDeformationField|BSpline To Deformation Field]]
-*Diffusion
-**Denoising
-***[[Documentation/{{documentation/version}}/Modules/DWIUnbiasedNonLocalMeansFilter|DWI Unbiased Non Local Means Filter]]
-*Filtering
-**[[Documentation/{{documentation/version}}/Modules/MRIBiasFieldCorrection|MRI Bias Field Correction]] (Sylvain Jaume) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]] (Bill Lorensen) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/ResampleScalarVolume|Resample Scalar Volume]] (Jim Miller) {{wip}}
-*Registration
-**[[Documentation/{{documentation/version}}/Modules/RigidRegistration|Rigid Registration]] (Jim Miller)  {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/AffineRegistration|Affine Registration]] (Daniel Blezek) {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/BSplineDeformableRegistration|BSpline Deformable Registration]] {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/ExpertAutomatedRegistration|Expert Automated Registration]] {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/LinearRegistration|Linear Registration]] {{wip}}
-**[[Documentation/{{documentation/version}}/Modules/MultiResolutionAffineRegistration|MultiResolution Affine Registration]] (Casey Goodlett){{wip}}
-<!--
-**[[Documentation/{{documentation/version}}/Modules/TestGridTransformRegistration|Test Grid Transform Registration]] {{wip}}
--->
-*Segmentation
-**[[Documentation/{{documentation/version}}/Modules/OtsuThresholdSegmentation|Otsu Threshold Segmentation]] (Bill Lorensen) {{wip}}

Difference between revisions of "Documentation/Nightly/Modules"

Latest revision as of 14:32, 29 October 2015

Modules by category

Astronomy

Cardiac

Cardiac MRI Toolkit

Chest Imaging Platform

Toolkit

Particles

Processing

Quantification

Registration

Segmentation

Utils

CIP

Converters

Developer Tools

DICOM Plugins

Editor Extensions

Matlab

Segment Editor Extensions

Utils

Diffusion

Diffusion Data Conversion

Diffusion Tensor Images

Diffusion Weighted Images

Import and Export

Process

Quantify

Tractography

Region-based

Utilities

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

Filter

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Converters

Legacy

Converters

Filtering

Registration

Work in Progress

Diffusion Tensor

Test

Libraries

Machine Learning

Margin Calculator

Mesh Generation

MeshGeneration

Microscopy

MultiVolume Support

Pathology

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiology

Radiotherapy

Registration

CMF Registration

Voxelbase Registration

Label Registration

Specialized

Segmentation

Specialized

Sequences

Slicelets

SlicerProstate

Surface Models

TestCases