Difference between revisions of "CCA:Atlases:MRI Brain Atlas 2010:ColorFile"
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[[Slicer3:LUTs_and_Ontologies|Back to LUT and ontologies page]] | [[Slicer3:LUTs_and_Ontologies|Back to LUT and ontologies page]] | ||
+ | |||
+ | *Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords | ||
+ | * [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format. | ||
+ | |||
[[Category:LabelPage]] | [[Category:LabelPage]] | ||
Line 48: | Line 52: | ||
| 0 | | 0 | ||
| background | | background | ||
− | | | + | | rgba(0,0,0,0.0) |
| The background label is included here because it isn't an anatomical structure. | | The background label is included here because it isn't an anatomical structure. | ||
|} | |} | ||
Line 61: | Line 65: | ||
! radlex_id | ! radlex_id | ||
! radlex_structure_id | ! radlex_structure_id | ||
+ | ! cca_atlas_id | ||
! notes | ! notes | ||
|- | |- | ||
Line 69: | Line 74: | ||
| RID16998 | | RID16998 | ||
| RID16998 | | RID16998 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 74: | Line 80: | ||
| 4 | | 4 | ||
| left lateral ventricle | | left lateral ventricle | ||
− | | rgb( | + | | rgb(90,105,215) |
− | | | + | | RID13807 |
− | | | + | | RID13807 |
+ | | | ||
| | | | ||
|- | |- | ||
Line 82: | Line 89: | ||
| 5 | | 5 | ||
| temporal horn of left lateral ventricle | | temporal horn of left lateral ventricle | ||
− | | rgb( | + | | rgb(90,170,215) |
| RID13803 | | RID13803 | ||
| RID13803 | | RID13803 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int7 | | int7 | ||
| 7 | | 7 | ||
− | | white matter of cerebellum | + | | white matter of left hemisphere of cerebellum |
− | | rgb( | + | | rgb(180,210,120) |
| RID17313 | | RID17313 | ||
− | | | + | | RID17313 |
+ | | | ||
| | | | ||
|- | |- | ||
Line 98: | Line 107: | ||
| 8 | | 8 | ||
| left cerebellar cortex | | left cerebellar cortex | ||
− | | rgb(230, | + | | rgb(230,150,35) |
| RID15574 | | RID15574 | ||
| RID15574 | | RID15574 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 106: | Line 116: | ||
| 10 | | 10 | ||
| left thalamus | | left thalamus | ||
− | | rgb(0, | + | | rgb(0,120,15) |
| RID13496 | | RID13496 | ||
| RID13496 | | RID13496 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 114: | Line 125: | ||
| 11 | | 11 | ||
| left caudate nucleus | | left caudate nucleus | ||
− | | rgb( | + | | rgb(120,185,220) |
| RID21020 | | RID21020 | ||
| RID21020 | | RID21020 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 122: | Line 134: | ||
| 12 | | 12 | ||
| left putamen | | left putamen | ||
− | | rgb( | + | | rgb(175,20,130) |
| RID21015 | | RID21015 | ||
| RID21015 | | RID21015 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 130: | Line 143: | ||
| 13 | | 13 | ||
| left globus pallidus pars externa | | left globus pallidus pars externa | ||
− | | rgb( | + | | rgb(10,50,255) |
− | | | + | | RID18435 |
− | | | + | | RID18435 |
| | | | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
| | | | ||
|- | |- | ||
Line 146: | Line 152: | ||
| 15 | | 15 | ||
| fourth ventricle | | fourth ventricle | ||
− | | rgb( | + | | rgb(90,105,215) |
| RID7147 | | RID7147 | ||
| RID7147 | | RID7147 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 157: | Line 164: | ||
| RID26565 | | RID26565 | ||
| RID26565 | | RID26565 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 162: | Line 170: | ||
| 18 | | 18 | ||
| left amygdala | | left amygdala | ||
− | | rgb( | + | | rgb(105,255,255) |
| RID15698 | | RID15698 | ||
| RID15698 | | RID15698 | ||
+ | | | ||
+ | | | ||
+ | |- | ||
+ | | int19 | ||
+ | | 19 | ||
+ | | cerebral aqueduct | ||
+ | | rgb(55,225,218) | ||
+ | | RID7171 | ||
+ | | RID7171 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int24 | | int24 | ||
| 24 | | 24 | ||
− | | third ventricle | + | | third ventricle |
− | | rgb( | + | | rgb(90,105,215) |
| RID7137 | | RID7137 | ||
| RID7137 | | RID7137 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 179: | Line 198: | ||
| left globus pallidus pars interna | | left globus pallidus pars interna | ||
| rgb(255,165,0) | | rgb(255,165,0) | ||
− | | | + | | RID18438 |
− | | | + | | RID18438 |
+ | | | ||
| | | | ||
|- | |- | ||
Line 189: | Line 209: | ||
| RID21022 | | RID21022 | ||
| RID21022 | | RID21022 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 194: | Line 215: | ||
| 27 | | 27 | ||
| left middle cerebellar peduncle | | left middle cerebellar peduncle | ||
− | | rgb(0,255, | + | | rgb(0,255,130) |
| RID18080 | | RID18080 | ||
| RID18080 | | RID18080 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int28 | | int28 | ||
| 28 | | 28 | ||
− | | left hypothalamus | + | | unsegmented region of left hypothalamus |
− | | rgb(165, | + | | rgb(165,40,40) |
| RID6639 | | RID6639 | ||
| RID6639 | | RID6639 | ||
+ | | CCAX-RID6639-L-U | ||
| | | | ||
|- | |- | ||
| int31 | | int31 | ||
| 31 | | 31 | ||
− | | choroid plexus of left | + | | choroid plexus of left cerebral hemisphere |
− | | rgb( | + | | rgb(90,105,215) |
| RID27793 | | RID27793 | ||
| RID27793 | | RID27793 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 218: | Line 242: | ||
| 34 | | 34 | ||
| left superior cerebellar peduncle | | left superior cerebellar peduncle | ||
− | | rgb( | + | | rgb(120,135,50) |
| RID18078 | | RID18078 | ||
| RID18078 | | RID18078 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int35 | | int35 | ||
| 35 | | 35 | ||
− | | pons | + | | unsegmented region of pons |
− | | rgb( | + | | rgb(50,50,135) |
| RID6728 | | RID6728 | ||
| RID6728 | | RID6728 | ||
+ | | CCAX-RID6728-U | ||
| | | | ||
|- | |- | ||
| int40 | | int40 | ||
| 40 | | 40 | ||
− | | midbrain | + | | unsegmented region of midbrain |
− | | rgb(205, | + | | rgb(205,60,80) |
| RID6768 | | RID6768 | ||
| RID6768 | | RID6768 | ||
+ | | CCAX-RID6768-U | ||
| | | | ||
|- | |- | ||
Line 242: | Line 269: | ||
| 41 | | 41 | ||
| white matter of right cerebral hemisphere | | white matter of right cerebral hemisphere | ||
− | | rgb( | + | | rgb(200,225,200) |
| RID16997 | | RID16997 | ||
| RID16997 | | RID16997 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 250: | Line 278: | ||
| 43 | | 43 | ||
| right lateral ventricle | | right lateral ventricle | ||
− | | rgb( | + | | rgb(90,105,215) |
− | | | + | | RID13806 |
− | | | + | | RID13806 |
+ | | | ||
| | | | ||
|- | |- | ||
Line 258: | Line 287: | ||
| 44 | | 44 | ||
| temporal horn of right lateral ventricle | | temporal horn of right lateral ventricle | ||
− | | rgb( | + | | rgb(90,170,215) |
| RID13802 | | RID13802 | ||
| RID13802 | | RID13802 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int46 | | int46 | ||
| 46 | | 46 | ||
− | | white matter of cerebellum | + | | white matter of right hemisphere of cerebellum |
− | | rgb( | + | | rgb(180,210,120) |
| RID17312 | | RID17312 | ||
− | | | + | | RID17312 |
+ | | | ||
| | | | ||
|- | |- | ||
Line 274: | Line 305: | ||
| 47 | | 47 | ||
| right cerebellar cortex | | right cerebellar cortex | ||
− | | rgb(230, | + | | rgb(230,150,35) |
| RID15573 | | RID15573 | ||
| RID15573 | | RID15573 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 282: | Line 314: | ||
| 49 | | 49 | ||
| right thalamus | | right thalamus | ||
− | | rgb(0, | + | | rgb(0,120,15) |
| RID13495 | | RID13495 | ||
| RID13495 | | RID13495 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 290: | Line 323: | ||
| 50 | | 50 | ||
| right caudate nucleus | | right caudate nucleus | ||
− | | rgb( | + | | rgb(120,185,220) |
| RID21019 | | RID21019 | ||
| RID21019 | | RID21019 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 298: | Line 332: | ||
| 51 | | 51 | ||
| right putamen | | right putamen | ||
− | | rgb( | + | | rgb(175,20,130) |
| RID21014 | | RID21014 | ||
| RID21014 | | RID21014 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 306: | Line 341: | ||
| 52 | | 52 | ||
| right globus pallidus pars externa | | right globus pallidus pars externa | ||
− | | rgb( | + | | rgb(15,50,255) |
− | | | + | | RID18434 |
− | | | + | | RID18434 |
+ | | | ||
| | | | ||
|- | |- | ||
Line 314: | Line 350: | ||
| 53 | | 53 | ||
| right hippocampus | | right hippocampus | ||
− | | rgb(220, | + | | rgb(220,215,20) |
| RID26564 | | RID26564 | ||
| RID26564 | | RID26564 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 322: | Line 359: | ||
| 54 | | 54 | ||
| right amygdala | | right amygdala | ||
− | | rgb( | + | | rgb(105,255,255) |
| RID15699 | | RID15699 | ||
| RID15699 | | RID15699 | ||
| | | | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
| | | | ||
|- | |- | ||
Line 341: | Line 371: | ||
| RID21021 | | RID21021 | ||
| RID21021 | | RID21021 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int60 | | int60 | ||
| 60 | | 60 | ||
− | | right hypothalamus | + | | unsegmented region of right hypothalamus |
− | | rgb(165, | + | | rgb(165,40,40) |
| RID6639 | | RID6639 | ||
| RID6639 | | RID6639 | ||
+ | | CCAX-RID6639-R-U | ||
| | | | ||
|- | |- | ||
Line 354: | Line 386: | ||
| 61 | | 61 | ||
| medulla oblongata | | medulla oblongata | ||
− | | rgb(135, | + | | rgb(135,205,235) |
| RID6681 | | RID6681 | ||
| RID6681 | | RID6681 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int63 | | int63 | ||
| 63 | | 63 | ||
− | | choroid plexus of right | + | |choroid plexus of right cerebral hemisphere |
− | | rgb( | + | | rgb(90,105,215) |
| RID27792 | | RID27792 | ||
| RID27792 | | RID27792 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 370: | Line 404: | ||
| 66 | | 66 | ||
| left substantia nigra | | left substantia nigra | ||
− | | rgb( | + | | rgb(120,135,50) |
| RID20742 | | RID20742 | ||
| RID20742 | | RID20742 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 378: | Line 413: | ||
| 71 | | 71 | ||
| right substantia nigra | | right substantia nigra | ||
− | | rgb( | + | | rgb(120,135,50) |
| RID20741 | | RID20741 | ||
| RID20741 | | RID20741 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 389: | Line 425: | ||
| RID6576 | | RID6576 | ||
| RID6576 | | RID6576 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 394: | Line 431: | ||
| 78 | | 78 | ||
| left optic tract | | left optic tract | ||
− | | rgb(255, | + | | rgb(255,150,10) |
| RID22698 | | RID22698 | ||
| RID22698 | | RID22698 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 402: | Line 440: | ||
| 79 | | 79 | ||
| left red nucleus | | left red nucleus | ||
− | | rgb(255, | + | | rgb(255,150,10) |
| RID20702 | | RID20702 | ||
| RID20702 | | RID20702 | ||
+ | | | ||
+ | | | ||
+ | |- | ||
+ | | int83 | ||
+ | | 83 | ||
+ | | right globus pallidus pars interna | ||
+ | | rgb(15,50,255) | ||
+ | | RID18437 | ||
+ | | RID18437 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 410: | Line 458: | ||
| 84 | | 84 | ||
| right red nucleus | | right red nucleus | ||
− | | rgb(255, | + | | rgb(255,220,185) |
| RID20701 | | RID20701 | ||
| RID20701 | | RID20701 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 418: | Line 467: | ||
| 85 | | 85 | ||
| optic chiasm | | optic chiasm | ||
− | | rgb(234, | + | | rgb(234,170,30) |
| RID6641 | | RID6641 | ||
| RID6641 | | RID6641 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 429: | Line 479: | ||
| RID6525 | | RID6525 | ||
| RID6525 | | RID6525 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 434: | Line 485: | ||
| 100 | | 100 | ||
| left mammillothalamic tract | | left mammillothalamic tract | ||
− | | rgb( | + | | rgb(125,140,180) |
− | | | + | | RID17575 |
− | | RID17563 | + | | RID17575 |
+ | | CCAX-RID17563-L | ||
| | | | ||
|- | |- | ||
Line 442: | Line 494: | ||
| 142 | | 142 | ||
| anterior commissure | | anterior commissure | ||
− | | rgb( | + | | rgb(220,225,70) |
| RID6911 | | RID6911 | ||
| RID6911 | | RID6911 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 450: | Line 503: | ||
| 200 | | 200 | ||
| right mammillothalamic tract | | right mammillothalamic tract | ||
− | | rgb(0,50, | + | | rgb(0,50,130) |
− | | | + | | RID17574 |
− | | RID17563 | + | | RID17574 |
+ | | CCAX-RID17563-R | ||
| | | | ||
|- | |- | ||
Line 458: | Line 512: | ||
| 216 | | 216 | ||
| right optic tract | | right optic tract | ||
− | | rgb(255, | + | | rgb(255,205,100) |
| RID22697 | | RID22697 | ||
| RID22697 | | RID22697 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int1000 | | int1000 | ||
| 1000 | | 1000 | ||
− | | left insula | + | | unsegmented region of left insula |
| rgb(125,5,25) | | rgb(125,5,25) | ||
| RID13871 | | RID13871 | ||
| RID13871 | | RID13871 | ||
+ | | CCAX-RID13871-U | ||
| | | | ||
|- | |- | ||
| int1001 | | int1001 | ||
| 1001 | | 1001 | ||
− | | left superior temporal gyrus ( | + | | left superior temporal gyrus (banks of left superior temporal sulcus) |
| rgb(25,100,40) | | rgb(25,100,40) | ||
+ | | RID20309 | ||
| RID13889 | | RID13889 | ||
− | | | + | | |
| | | | ||
|- | |- | ||
| int1002 | | int1002 | ||
| 1002 | | 1002 | ||
− | | left cingulate gyrus | + | | caudal part of left anterior cingulate gyrus |
| rgb(125,100,160) | | rgb(125,100,160) | ||
| RID26841 | | RID26841 | ||
| RID26841 | | RID26841 | ||
+ | | CCAX-RID26841-S | ||
| | | | ||
|- | |- | ||
| int1003 | | int1003 | ||
| 1003 | | 1003 | ||
− | | left middle frontal gyrus | + | | posterior part of left middle frontal gyrus |
| rgb(100,25,0) | | rgb(100,25,0) | ||
− | | | + | | RID26835 |
− | | | + | | RID14075 |
+ | | | ||
| | | | ||
|- | |- | ||
Line 499: | Line 558: | ||
| left cuneus | | left cuneus | ||
| rgb(220,20,100) | | rgb(220,20,100) | ||
+ | | RID20356 | ||
| RID26552 | | RID26552 | ||
− | | | + | | |
| | | | ||
|- | |- | ||
Line 506: | Line 566: | ||
| 1006 | | 1006 | ||
| left ambiens gyrus | | left ambiens gyrus | ||
− | | rgb( | + | | rgb(185,15,10) |
| RID26595 | | RID26595 | ||
| RID26595 | | RID26595 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 517: | Line 578: | ||
| RID26541 | | RID26541 | ||
| RID26541 | | RID26541 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int1008 | | int1008 | ||
| 1008 | | 1008 | ||
− | | left inferior parietal lobule | + | | unsegmented region of left inferior parietal lobule |
− | | rgb( | + | | rgb(180,90,185) |
− | | | + | | RID27590 |
| RID14108 | | RID14108 | ||
+ | | CCAX-RID14108-U | ||
| | | | ||
|- | |- | ||
Line 531: | Line 594: | ||
| left inferior temporal gyrus | | left inferior temporal gyrus | ||
| rgb(180,40,120) | | rgb(180,40,120) | ||
+ | | RID20315 | ||
| RID13893 | | RID13893 | ||
− | | | + | | |
| | | | ||
|- | |- | ||
| int1010 | | int1010 | ||
| 1010 | | 1010 | ||
− | | left cingulate gyrus | + | | isthmus of left cingulate gyrus |
| rgb(140,20,140) | | rgb(140,20,140) | ||
| RID20384 | | RID20384 | ||
| RID14043 | | RID14043 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 547: | Line 612: | ||
| left lateral occipital gyrus | | left lateral occipital gyrus | ||
| rgb(20,30,140) | | rgb(20,30,140) | ||
+ | | RID20353 | ||
| RID13938 | | RID13938 | ||
− | | | + | | |
| | | | ||
|- | |- | ||
| int1012 | | int1012 | ||
| 1012 | | 1012 | ||
− | | left orbital | + | | left lateral orbital gyrus |
| rgb(35,75,50) | | rgb(35,75,50) | ||
− | | | + | | RID20293 |
− | | | + | | RID13924 |
+ | | | ||
| | | | ||
|- | |- | ||
Line 565: | Line 632: | ||
| RID20359 | | RID20359 | ||
| RID26554 | | RID26554 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 571: | Line 639: | ||
| left straight gyrus | | left straight gyrus | ||
| rgb(200,35,75) | | rgb(200,35,75) | ||
− | | | + | | RID20278 |
− | | | + | | RID13906 |
+ | | | ||
| | | | ||
|- | |- | ||
Line 581: | Line 650: | ||
| RID20312 | | RID20312 | ||
| RID13891 | | RID13891 | ||
+ | | | ||
+ | | | ||
+ | |- | ||
+ | | int1016 | ||
+ | | 1016 | ||
+ | | left parahippocampal gyrus | ||
+ | | rgb(250,250,250) | ||
+ | | RID20306 | ||
+ | | RID13956 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 586: | Line 665: | ||
| 1017 | | 1017 | ||
| left paracentral lobule | | left paracentral lobule | ||
− | | rgb( | + | | rgb(60,175,80) |
| RID27593 | | RID27593 | ||
| RID14112 | | RID14112 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 594: | Line 674: | ||
| 1018 | | 1018 | ||
| opercular part of left inferior frontal gyrus | | opercular part of left inferior frontal gyrus | ||
− | | rgb( | + | | rgb(70,180,30) |
| RID22705 | | RID22705 | ||
| RID13978 | | RID13978 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 605: | Line 686: | ||
| RID22708 | | RID22708 | ||
| RID13981 | | RID13981 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 613: | Line 695: | ||
| RID22702 | | RID22702 | ||
| RID13975 | | RID13975 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 621: | Line 704: | ||
| RID25841 | | RID25841 | ||
| RID25841 | | RID25841 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 626: | Line 710: | ||
| 1022 | | 1022 | ||
| left postcentral gyrus | | left postcentral gyrus | ||
− | | rgb( | + | | rgb(195,40,40) |
| RID20334 | | RID20334 | ||
| RID13928 | | RID13928 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int1023 | | int1023 | ||
| 1023 | | 1023 | ||
− | | left cingulate gyrus | + | | left posterior cingulate gyrus |
| rgb(220,180,220) | | rgb(220,180,220) | ||
| RID20378 | | RID20378 | ||
| RID14049 | | RID14049 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 642: | Line 728: | ||
| 1024 | | 1024 | ||
| left precentral gyrus | | left precentral gyrus | ||
− | | rgb( | + | | rgb(95,75,175) |
| RID20275 | | RID20275 | ||
| RID13912 | | RID13912 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 653: | Line 740: | ||
| RID20346 | | RID20346 | ||
| RID13963 | | RID13963 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int1026 | | int1026 | ||
| 1026 | | 1026 | ||
− | | left cingulate gyrus | + | | rostral part of left anterior cingulate gyrus |
| rgb(80,20,140) | | rgb(80,20,140) | ||
| RID26838 | | RID26838 | ||
| RID26838 | | RID26838 | ||
− | | | + | | CCAX-RID26838-S |
+ | | look at structure id | ||
|- | |- | ||
| int1027 | | int1027 | ||
| 1027 | | 1027 | ||
− | | left middle frontal gyrus | + | | anterior part of left middle frontal gyrus |
| rgb(75,50,125) | | rgb(75,50,125) | ||
| RID26832 | | RID26832 | ||
| RID14069 | | RID14069 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int1028 | | int1028 | ||
| 1028 | | 1028 | ||
− | | left superior frontal gyrus | + | | left superior frontal gyrus |
− | | rgb( | + | | rgb(50,160,150) |
| RID20269 | | RID20269 | ||
| RID13903 | | RID13903 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int1029 | | int1029 | ||
| 1029 | | 1029 | ||
− | | left superior parietal lobule | + | | left superior parietal lobule |
| rgb(20,180,140) | | rgb(20,180,140) | ||
− | | | + | | RID20343 |
− | | RID14110 | + | | RID14110 |
| | | | ||
+ | | may include precuneus in labeling | ||
|- | |- | ||
| int1030 | | int1030 | ||
Line 693: | Line 785: | ||
| RID20309 | | RID20309 | ||
| RID13889 | | RID13889 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int1031 | | int1031 | ||
| 1031 | | 1031 | ||
− | | left | + | | left supramarginal gyrus |
| rgb(80,160,20) | | rgb(80,160,20) | ||
− | | RID20337 | + | | RID20337 |
− | | | + | | RID13930 |
| | | | ||
+ | | May include angular gyrus | ||
|- | |- | ||
| int1032 | | int1032 | ||
Line 709: | Line 803: | ||
| RID26767 | | RID26767 | ||
| RID20409 | | RID20409 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 717: | Line 812: | ||
| RID26770 | | RID26770 | ||
| RID20416 | | RID20416 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int1034 | | int1034 | ||
| 1034 | | 1034 | ||
− | | left transverse temporal | + | | left transverse temporal gyrus |
| rgb(150,150,200) | | rgb(150,150,200) | ||
| RID20330 | | RID20330 | ||
| RID26543 | | RID26543 | ||
+ | | | ||
| | | | ||
|- | |- | ||
− | | int2000 | + | | int1035 |
+ | | 1035 | ||
+ | | limen of left insula | ||
+ | | rgb(145,50,65) | ||
+ | | RID26595 | ||
+ | | | ||
+ | | | ||
+ | | | ||
+ | |- | ||
+ | | int2000 | ||
| 2000 | | 2000 | ||
− | | right insula | + | | unsegmented region of right insula |
− | | rgb( | + | | rgb(80,196,98) |
| RID13870 | | RID13870 | ||
| RID13870 | | RID13870 | ||
+ | | CCAX-RID13870-U | ||
| | | | ||
|- | |- | ||
| int2001 | | int2001 | ||
| 2001 | | 2001 | ||
− | | right superior temporal gyrus ( | + | | right superior temporal gyrus (banks of right superior temporal sulcus) |
| rgb(25,100,40) | | rgb(25,100,40) | ||
| RID20308 | | RID20308 | ||
| RID13888 | | RID13888 | ||
+ | | | ||
+ | | | ||
+ | |- | ||
+ | | int2002 | ||
+ | | 2002 | ||
+ | | caudal part of right anterior cingulate gyrus | ||
+ | | rgb(125,100,160) | ||
+ | | RID26840 | ||
+ | | RID26840 | ||
+ | | CCAX-RID26840-S | ||
| | | | ||
|- | |- | ||
| int2003 | | int2003 | ||
| 2003 | | 2003 | ||
− | | right middle frontal gyrus | + | | posterior part of right middle frontal gyrus |
| rgb(100,25,0) | | rgb(100,25,0) | ||
| RID26834 | | RID26834 | ||
| RID14074 | | RID14074 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 757: | Line 875: | ||
| RID20355 | | RID20355 | ||
| RID26551 | | RID26551 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 763: | Line 882: | ||
| right ambiens gyrus | | right ambiens gyrus | ||
| rgb(220,20,100) | | rgb(220,20,100) | ||
− | | | + | | RID26594 |
− | | | + | | RID26594 |
+ | | | ||
| | | | ||
|- | |- | ||
Line 773: | Line 893: | ||
| RID20317 | | RID20317 | ||
| RID26540 | | RID26540 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int2008 | | int2008 | ||
| 2008 | | 2008 | ||
− | | right | + | | unsegmented region of right inferior parietal lobule |
− | | rgb( | + | | rgb(185,90,185) |
| RID15673 | | RID15673 | ||
| RID14107 | | RID14107 | ||
+ | | CCAX-RID14107-U | ||
| | | | ||
|- | |- | ||
Line 789: | Line 911: | ||
| RID20314 | | RID20314 | ||
| RID13892 | | RID13892 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int2010 | | int2010 | ||
| 2010 | | 2010 | ||
− | | right cingulate gyrus | + | | isthmus of right cingulate gyrus |
| rgb(140,20,140) | | rgb(140,20,140) | ||
| RID20383 | | RID20383 | ||
| RID14042 | | RID14042 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 805: | Line 929: | ||
| RID20352 | | RID20352 | ||
| RID13937 | | RID13937 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int2012 | | int2012 | ||
| 2012 | | 2012 | ||
− | | right orbital | + | | right lateral orbital gyrus |
| rgb(35,75,50) | | rgb(35,75,50) | ||
| RID20292 | | RID20292 | ||
| RID13923 | | RID13923 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 821: | Line 947: | ||
| RID20358 | | RID20358 | ||
| RID26553 | | RID26553 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 829: | Line 956: | ||
| RID20277 | | RID20277 | ||
| RID13905 | | RID13905 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 837: | Line 965: | ||
| RID20311 | | RID20311 | ||
| RID13890 | | RID13890 | ||
+ | | | ||
| | | | ||
|- | |- | ||
− | | int2017 | + | | int2016 |
+ | | 2016 | ||
+ | | right parahippocampal gyrus | ||
+ | | rgb(45,165,45) | ||
+ | | RID20305 | ||
+ | | RID13955 | ||
+ | | | ||
+ | | | ||
+ | |- | ||
+ | | int2017 | ||
| 2017 | | 2017 | ||
| right paracentral lobule | | right paracentral lobule | ||
− | | rgb( | + | | rgb(105,205,105) |
| RID27592 | | RID27592 | ||
| RID14111 | | RID14111 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 853: | Line 992: | ||
| RID22704 | | RID22704 | ||
| RID13977 | | RID13977 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 861: | Line 1,001: | ||
| RID22707 | | RID22707 | ||
| RID13980 | | RID13980 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 869: | Line 1,010: | ||
| RID22701 | | RID22701 | ||
| RID13974 | | RID13974 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 877: | Line 1,019: | ||
| RID25840 | | RID25840 | ||
| RID25840 | | RID25840 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 882: | Line 1,025: | ||
| 2022 | | 2022 | ||
| right postcentral gyrus | | right postcentral gyrus | ||
− | | rgb( | + | | rgb(195,40,40) |
| RID20333 | | RID20333 | ||
| RID13927 | | RID13927 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int2023 | | int2023 | ||
| 2023 | | 2023 | ||
− | | right cingulate gyrus | + | | right posterior cingulate gyrus |
| rgb(220,180,220) | | rgb(220,180,220) | ||
| RID20377 | | RID20377 | ||
| RID14048 | | RID14048 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 898: | Line 1,043: | ||
| 2024 | | 2024 | ||
| right precentral gyrus | | right precentral gyrus | ||
− | | rgb( | + | | rgb(95,75,175) |
| RID20274 | | RID20274 | ||
| RID13911 | | RID13911 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 909: | Line 1,055: | ||
| RID20345 | | RID20345 | ||
| RID13962 | | RID13962 | ||
+ | | | ||
| | | | ||
+ | |- | ||
+ | | int2026 | ||
+ | | 2026 | ||
+ | | rostral part of right anterior cingulate gyrus | ||
+ | | rgb(80,20,140) | ||
+ | | RID26837 | ||
+ | | RID26837 | ||
+ | | CCAX-RID26837-S | ||
+ | | look at structure id | ||
|- | |- | ||
| int2027 | | int2027 | ||
| 2027 | | 2027 | ||
− | | right middle frontal gyrus | + | | anterior part of right middle frontal gyrus |
| rgb(75,50,125) | | rgb(75,50,125) | ||
| RID26831 | | RID26831 | ||
| RID14068 | | RID14068 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 922: | Line 1,079: | ||
| 2028 | | 2028 | ||
| right superior frontal gyrus | | right superior frontal gyrus | ||
− | | rgb( | + | | rgb(50,160,150) |
| RID20268 | | RID20268 | ||
| RID13902 | | RID13902 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 934: | Line 1,092: | ||
| RID14109 | | RID14109 | ||
| | | | ||
+ | | may include precuneus | ||
|- | |- | ||
| int2030 | | int2030 | ||
| 2030 | | 2030 | ||
− | | right superior temporal gyrus | + | | right superior temporal gyrus |
| rgb(140,220,220) | | rgb(140,220,220) | ||
| RID20308 | | RID20308 | ||
| RID13888 | | RID13888 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 950: | Line 1,110: | ||
| RID13929 | | RID13929 | ||
| | | | ||
+ | | may include angular gyrus | ||
|- | |- | ||
| int2032 | | int2032 | ||
Line 957: | Line 1,118: | ||
| RID26766 | | RID26766 | ||
| RID20408 | | RID20408 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 965: | Line 1,127: | ||
| RID26769 | | RID26769 | ||
| RID20415 | | RID20415 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int2034 | | int2034 | ||
| 2034 | | 2034 | ||
− | | right transverse temporal | + | | right transverse temporal gyrus |
| rgb(150,150,200) | | rgb(150,150,200) | ||
| RID20329 | | RID20329 | ||
| RID26542 | | RID26542 | ||
| | | | ||
+ | | | ||
+ | |- | ||
+ | | int2035 | ||
+ | | 2035 | ||
+ | | limen of right insula | ||
+ | | rgb(110, 150, 120) | ||
+ | | RID26594 | ||
+ | | | ||
+ | | | ||
+ | | | ||
|- | |- | ||
| int2108 | | int2108 | ||
| 2108 | | 2108 | ||
− | | right angular and supramarginal gyri | + | | right angular and supramarginal gyri (obsolete label) |
| rgb(230,250,230) | | rgb(230,250,230) | ||
| RID22701 | | RID22701 | ||
| RID13974 | | RID13974 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 989: | Line 1,163: | ||
| RID15701 | | RID15701 | ||
| RID15701 | | RID15701 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 997: | Line 1,172: | ||
| RID15700 | | RID15700 | ||
| RID15700 | | RID15700 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int3002 | | int3002 | ||
| 3002 | | 3002 | ||
− | | right | + | | right mammillary body |
| rgb(130,155,95) | | rgb(130,155,95) | ||
| RID26776 | | RID26776 | ||
| RID26776 | | RID26776 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int3003 | | int3003 | ||
| 3003 | | 3003 | ||
− | | left | + | | left mammillary body |
| rgb(155,230,255) | | rgb(155,230,255) | ||
| RID26777 | | RID26777 | ||
| RID26777 | | RID26777 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 1,018: | Line 1,196: | ||
| 3004 | | 3004 | ||
| corpus callosum | | corpus callosum | ||
− | | rgb( | + | | rgb(250,240,20) |
| RID6915 | | RID6915 | ||
| RID6915 | | RID6915 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 1,029: | Line 1,208: | ||
| RID18106 | | RID18106 | ||
| RID18106 | | RID18106 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 1,037: | Line 1,217: | ||
| RID18107 | | RID18107 | ||
| RID18107 | | RID18107 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 1,045: | Line 1,226: | ||
| RID15529 | | RID15529 | ||
| RID15529 | | RID15529 | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 1,053: | Line 1,235: | ||
| RID15522 | | RID15522 | ||
| RID15522 | | RID15522 | ||
+ | | | ||
| | | | ||
|- | |- | ||
| int3012 | | int3012 | ||
| 3012 | | 3012 | ||
− | | neurohypophysis | + | | unsegmented region of neurohypophysis |
| rgb(220,180,205) | | rgb(220,180,205) | ||
| RID6645 | | RID6645 | ||
| RID6645 | | RID6645 | ||
+ | | CCAX-RID6645-U | ||
| | | | ||
|} | |} | ||
Line 1,089: | Line 1,273: | ||
| 502 | | 502 | ||
| right medial geniculate body | | right medial geniculate body | ||
− | | rgb(125,250, | + | | rgb(125,250,20) |
− | | style="background:# | + | | style="background:#7DFA14"| |
| RID20560 | | RID20560 | ||
| RID20560 | | RID20560 | ||
Line 1,096: | Line 1,280: | ||
| 503 | | 503 | ||
| left medial geniculate body | | left medial geniculate body | ||
− | | rgb(125,250, | + | | rgb(125,250, 20) |
− | | style="background:# | + | | style="background:#7DFA14"| |
| RID20561 | | RID20561 | ||
| RID20561 | | RID20561 | ||
Line 1,103: | Line 1,287: | ||
| 504 | | 504 | ||
| right lateral geniculate body | | right lateral geniculate body | ||
− | | rgb( | + | | rgb(100,180,255) |
− | | style="background:# | + | | style="background:#64B4FF"| |
| RID20562 | | RID20562 | ||
| RID20562 | | RID20562 | ||
Line 1,110: | Line 1,294: | ||
| 505 | | 505 | ||
| left lateral geniculate body | | left lateral geniculate body | ||
− | | rgb( | + | | rgb(100,180,255) |
− | | style="background:# | + | | style="background:#64B4FF"| |
| RID20563 | | RID20563 | ||
| RID20563 | | RID20563 | ||
Line 1,117: | Line 1,301: | ||
| 506 | | 506 | ||
| right pulvinar | | right pulvinar | ||
− | | rgb(63, | + | | rgb(63,105,225) |
− | | style="background:# | + | | style="background:#3F69E1"| |
| RID20564 | | RID20564 | ||
| RID20564 | | RID20564 | ||
Line 1,124: | Line 1,308: | ||
| 507 | | 507 | ||
| left pulvinar | | left pulvinar | ||
− | | rgb(63, | + | | rgb(63,105,225) |
− | | style="background:# | + | | style="background:#3F69E1"| |
| RID20565 | | RID20565 | ||
| RID20565 | | RID20565 | ||
Line 1,131: | Line 1,315: | ||
| 508 | | 508 | ||
| right anterior thalamic nucleus | | right anterior thalamic nucleus | ||
− | | rgb(255,25, | + | | rgb(255,25,130) |
− | | style="background:# | + | | style="background:#FF1982; color:#fff"|in the old SPL-BrainAtlas-Colorfile.txt ''L'' and ''R'' are mislabeled (switched) |
| RID20544 | | RID20544 | ||
| RID20544 | | RID20544 | ||
Line 1,138: | Line 1,322: | ||
| 509 | | 509 | ||
| left anterior thalamic nucleus | | left anterior thalamic nucleus | ||
− | | rgb(255,25, | + | | rgb(255,25,130) |
− | | style="background:# | + | | style="background:#FF1982; color:#fff"|in the old SPL-BrainAtlas-Colorfile.txt ''L'' and ''R'' are mislabeled (switched) |
| RID20545 | | RID20545 | ||
| RID20545 | | RID20545 | ||
Line 1,145: | Line 1,329: | ||
| 510 | | 510 | ||
| right dorsomedial thalamic nucleus | | right dorsomedial thalamic nucleus | ||
− | | rgb(60, | + | | rgb(60,190,130) |
| style="background:#3CBD82"| | | style="background:#3CBD82"| | ||
| RID20535 | | RID20535 | ||
Line 1,152: | Line 1,336: | ||
| 511 | | 511 | ||
| left dorsomedial thalamic nucleus | | left dorsomedial thalamic nucleus | ||
− | | rgb(60, | + | | rgb(60,190,130) |
| style="background:#3CBD82"| | | style="background:#3CBD82"| | ||
| RID20536 | | RID20536 | ||
Line 1,159: | Line 1,343: | ||
| 512 | | 512 | ||
| right centromedian thalamic nucleus | | right centromedian thalamic nucleus | ||
− | | rgb( | + | | rgb(190,180,105) |
− | | style="background:# | + | | style="background:#BEB469"| |
| RID20568 | | RID20568 | ||
| RID20568 | | RID20568 | ||
Line 1,166: | Line 1,350: | ||
| 513 | | 513 | ||
| left centromedian thalamic nucleus | | left centromedian thalamic nucleus | ||
− | | rgb( | + | | rgb(190,180,105) |
− | | style="background:# | + | | style="background:#BEB469"| |
| RID20569 | | RID20569 | ||
| RID20569 | | RID20569 | ||
Line 1,173: | Line 1,357: | ||
| 514 | | 514 | ||
| right ventral anterior thalamic nucleus | | right ventral anterior thalamic nucleus | ||
− | | rgb( | + | | rgb(255,213,0) |
− | | style="background:# | + | | style="background:#FFD500"| |
| RID20929 | | RID20929 | ||
| RID20929 | | RID20929 | ||
Line 1,180: | Line 1,364: | ||
| 515 | | 515 | ||
| left ventral anterior thalamic nucleus | | left ventral anterior thalamic nucleus | ||
− | | rgb( | + | | rgb(255,213,0) |
− | | style="background:# | + | | style="background:#FFD500"| |
| RID20930 | | RID20930 | ||
| RID20930 | | RID20930 | ||
Line 1,201: | Line 1,385: | ||
| 518 | | 518 | ||
| right lateral posterior thalamic nucleus | | right lateral posterior thalamic nucleus | ||
− | | rgb( | + | | rgb(205,130,0) |
− | | style="background:# | + | | style="background:#CD8200"| |
| RID20927 | | RID20927 | ||
| RID20927 | | RID20927 | ||
Line 1,208: | Line 1,392: | ||
| 519 | | 519 | ||
| left lateral posterior thalamic nucleus | | left lateral posterior thalamic nucleus | ||
− | | rgb( | + | | rgb(205,130,0) |
− | | style="background:# | + | | style="background:#CD8200"| |
| RID20928 | | RID20928 | ||
| RID20928 | | RID20928 | ||
Line 1,215: | Line 1,399: | ||
| 520 | | 520 | ||
| right lateral dorsal thalamic nucleus | | right lateral dorsal thalamic nucleus | ||
− | | rgb(175, | + | | rgb(175,190,220) |
− | | style="background:# | + | | style="background:#AFBEDC"| |
| RID20925 | | RID20925 | ||
| RID20925 | | RID20925 | ||
Line 1,222: | Line 1,406: | ||
| 521 | | 521 | ||
| left lateral dorsal thalamic nucleus | | left lateral dorsal thalamic nucleus | ||
− | | rgb(175, | + | | rgb(175,190,220) |
− | | style="background:# | + | | style="background:#AFBEDC"| |
| RID20926 | | RID20926 | ||
| RID20926 | | RID20926 | ||
Line 1,229: | Line 1,413: | ||
| 522 | | 522 | ||
| right ventral posteromedial thalamic nucleus | | right ventral posteromedial thalamic nucleus | ||
− | | rgb(225, | + | | rgb(225,170,105) |
− | | style="background:# | + | | style="background:#FFAA69"| |
| RID20506 | | RID20506 | ||
| RID20506 | | RID20506 | ||
Line 1,236: | Line 1,420: | ||
| 523 | | 523 | ||
| left ventral posteromedial thalamic nucleus | | left ventral posteromedial thalamic nucleus | ||
− | | rgb(225, | + | | rgb(225,170,105) |
− | | style="background:# | + | | style="background:#FFAA69"| |
| RID20507 | | RID20507 | ||
| RID20507 | | RID20507 | ||
Line 1,243: | Line 1,427: | ||
| 524 | | 524 | ||
| right ventral posterolateral thalamic nucleus | | right ventral posterolateral thalamic nucleus | ||
− | | rgb( | + | | rgb(230,130,130) |
− | | style="background:# | + | | style="background:#E68282"| |
| RID20504 | | RID20504 | ||
| RID20504 | | RID20504 | ||
Line 1,250: | Line 1,434: | ||
| 525 | | 525 | ||
| left ventral posterolateral thalamic nucleus | | left ventral posterolateral thalamic nucleus | ||
− | | rgb( | + | | rgb(230,130,130) |
− | | style="background:# | + | | style="background:#E68282"| |
| RID20505 | | RID20505 | ||
| RID20505 | | RID20505 | ||
Line 1,257: | Line 1,441: | ||
=== Extra Freesurfer labels === | === Extra Freesurfer labels === | ||
− | |||
− | + | See [[Slicer3:Freesurfer_labels]]. | |
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Latest revision as of 21:57, 9 August 2012
Home < CCA:Atlases:MRI Brain Atlas 2010:ColorFile
Back to LUT and ontologies page
- Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
- Go here to create a text file in Slicer LUT format.
Title
NAC CCA Core 2010 MRI Brain Atlas
Description
This file contains the label information for the 2010 MRI Brain Atlas from the NAC CCA Core.
Credits
- Authors
- Ion-Florin Talos MD
- Michael Halle PhD
- Institutions
- Center for Computational Anatomy Core, Neuroimage Analysis Center, Surgical Planning Lab, Brigham and Women's Hospital
- Grants
- Neuroimage Analysis Center (NAC), National Institutes of Health (NIH), National Center for Research Resources (NCRR), NIH P41 RR13218.
- Creation Date
- 02/16/2009
Imports
Lookup table information can be imported from other pages by adding links to those pages in a section like this one named "Imports".
The atlas doesn't currently import any such files.
Lookup table information
Any tables defined with class "labelpagetable" in the wiki markup will be interpreted as part of the color file description. The information in the tables are concatenated. For color file construction, the tables need to have columns named "integer_label", "text_label", and "color". These columns can appear in any order. Other columns can be included (for example, "notes").
Multiple tables can be used to organize large sets of labels for efficient viewing and editing.
The "color" column uses either CSS3-type color descriptions or raw integer values to describe the red, green, blue, and possibly alpha values of the color.
Non-anatomic entities
integer_label | text_label | color | notes |
---|---|---|---|
0 | background | rgba(0,0,0,0.0) | The background label is included here because it isn't an anatomical structure. |
Atlas lookup table
id | integer_label | text_label | color | radlex_id | radlex_structure_id | cca_atlas_id | notes |
---|---|---|---|---|---|---|---|
int2 | 2 | white matter of left cerebral hemisphere | rgb(245,245,245) | RID16998 | RID16998 | ||
int4 | 4 | left lateral ventricle | rgb(90,105,215) | RID13807 | RID13807 | ||
int5 | 5 | temporal horn of left lateral ventricle | rgb(90,170,215) | RID13803 | RID13803 | ||
int7 | 7 | white matter of left hemisphere of cerebellum | rgb(180,210,120) | RID17313 | RID17313 | ||
int8 | 8 | left cerebellar cortex | rgb(230,150,35) | RID15574 | RID15574 | ||
int10 | 10 | left thalamus | rgb(0,120,15) | RID13496 | RID13496 | ||
int11 | 11 | left caudate nucleus | rgb(120,185,220) | RID21020 | RID21020 | ||
int12 | 12 | left putamen | rgb(175,20,130) | RID21015 | RID21015 | ||
int13 | 13 | left globus pallidus pars externa | rgb(10,50,255) | RID18435 | RID18435 | ||
int15 | 15 | fourth ventricle | rgb(90,105,215) | RID7147 | RID7147 | ||
int17 | 17 | left hippocampus | rgb(220,216,20) | RID26565 | RID26565 | ||
int18 | 18 | left amygdala | rgb(105,255,255) | RID15698 | RID15698 | ||
int19 | 19 | cerebral aqueduct | rgb(55,225,218) | RID7171 | RID7171 | ||
int24 | 24 | third ventricle | rgb(90,105,215) | RID7137 | RID7137 | ||
int25 | 25 | left globus pallidus pars interna | rgb(255,165,0) | RID18438 | RID18438 | ||
int26 | 26 | left nucleus accumbens | rgb(165,0,255) | RID21022 | RID21022 | ||
int27 | 27 | left middle cerebellar peduncle | rgb(0,255,130) | RID18080 | RID18080 | ||
int28 | 28 | unsegmented region of left hypothalamus | rgb(165,40,40) | RID6639 | RID6639 | CCAX-RID6639-L-U | |
int31 | 31 | choroid plexus of left cerebral hemisphere | rgb(90,105,215) | RID27793 | RID27793 | ||
int34 | 34 | left superior cerebellar peduncle | rgb(120,135,50) | RID18078 | RID18078 | ||
int35 | 35 | unsegmented region of pons | rgb(50,50,135) | RID6728 | RID6728 | CCAX-RID6728-U | |
int40 | 40 | unsegmented region of midbrain | rgb(205,60,80) | RID6768 | RID6768 | CCAX-RID6768-U | |
int41 | 41 | white matter of right cerebral hemisphere | rgb(200,225,200) | RID16997 | RID16997 | ||
int43 | 43 | right lateral ventricle | rgb(90,105,215) | RID13806 | RID13806 | ||
int44 | 44 | temporal horn of right lateral ventricle | rgb(90,170,215) | RID13802 | RID13802 | ||
int46 | 46 | white matter of right hemisphere of cerebellum | rgb(180,210,120) | RID17312 | RID17312 | ||
int47 | 47 | right cerebellar cortex | rgb(230,150,35) | RID15573 | RID15573 | ||
int49 | 49 | right thalamus | rgb(0,120,15) | RID13495 | RID13495 | ||
int50 | 50 | right caudate nucleus | rgb(120,185,220) | RID21019 | RID21019 | ||
int51 | 51 | right putamen | rgb(175,20,130) | RID21014 | RID21014 | ||
int52 | 52 | right globus pallidus pars externa | rgb(15,50,255) | RID18434 | RID18434 | ||
int53 | 53 | right hippocampus | rgb(220,215,20) | RID26564 | RID26564 | ||
int54 | 54 | right amygdala | rgb(105,255,255) | RID15699 | RID15699 | ||
int58 | 58 | right nucleus accumbens | rgb(255,165,0) | RID21021 | RID21021 | ||
int60 | 60 | unsegmented region of right hypothalamus | rgb(165,40,40) | RID6639 | RID6639 | CCAX-RID6639-R-U | |
int61 | 61 | medulla oblongata | rgb(135,205,235) | RID6681 | RID6681 | ||
int63 | 63 | choroid plexus of right cerebral hemisphere | rgb(90,105,215) | RID27792 | RID27792 | ||
int66 | 66 | left substantia nigra | rgb(120,135,50) | RID20742 | RID20742 | ||
int71 | 71 | right substantia nigra | rgb(120,135,50) | RID20741 | RID20741 | ||
int72 | 72 | pineal body | rgb(120,190,150) | RID6576 | RID6576 | ||
int78 | 78 | left optic tract | rgb(255,150,10) | RID22698 | RID22698 | ||
int79 | 79 | left red nucleus | rgb(255,150,10) | RID20702 | RID20702 | ||
int83 | 83 | right globus pallidus pars interna | rgb(15,50,255) | RID18437 | RID18437 | ||
int84 | 84 | right red nucleus | rgb(255,220,185) | RID20701 | RID20701 | ||
int85 | 85 | optic chiasm | rgb(234,170,30) | RID6641 | RID6641 | ||
int96 | 96 | pellucid septum | rgb(205,10,125) | RID6525 | RID6525 | ||
int100 | 100 | left mammillothalamic tract | rgb(125,140,180) | RID17575 | RID17575 | CCAX-RID17563-L | |
int142 | 142 | anterior commissure | rgb(220,225,70) | RID6911 | RID6911 | ||
int200 | 200 | right mammillothalamic tract | rgb(0,50,130) | RID17574 | RID17574 | CCAX-RID17563-R | |
int216 | 216 | right optic tract | rgb(255,205,100) | RID22697 | RID22697 | ||
int1000 | 1000 | unsegmented region of left insula | rgb(125,5,25) | RID13871 | RID13871 | CCAX-RID13871-U | |
int1001 | 1001 | left superior temporal gyrus (banks of left superior temporal sulcus) | rgb(25,100,40) | RID20309 | RID13889 | ||
int1002 | 1002 | caudal part of left anterior cingulate gyrus | rgb(125,100,160) | RID26841 | RID26841 | CCAX-RID26841-S | |
int1003 | 1003 | posterior part of left middle frontal gyrus | rgb(100,25,0) | RID26835 | RID14075 | ||
int1005 | 1005 | left cuneus | rgb(220,20,100) | RID20356 | RID26552 | ||
int1006 | 1006 | left ambiens gyrus | rgb(185,15,10) | RID26595 | RID26595 | ||
int1007 | 1007 | left fusiform gyrus | rgb(180,220,140) | RID26541 | RID26541 | ||
int1008 | 1008 | unsegmented region of left inferior parietal lobule | rgb(180,90,185) | RID27590 | RID14108 | CCAX-RID14108-U | |
int1009 | 1009 | left inferior temporal gyrus | rgb(180,40,120) | RID20315 | RID13893 | ||
int1010 | 1010 | isthmus of left cingulate gyrus | rgb(140,20,140) | RID20384 | RID14043 | ||
int1011 | 1011 | left lateral occipital gyrus | rgb(20,30,140) | RID20353 | RID13938 | ||
int1012 | 1012 | left lateral orbital gyrus | rgb(35,75,50) | RID20293 | RID13924 | ||
int1013 | 1013 | left lingual gyrus | rgb(225,140,140) | RID20359 | RID26554 | ||
int1014 | 1014 | left straight gyrus | rgb(200,35,75) | RID20278 | RID13906 | ||
int1015 | 1015 | left middle temporal gyrus | rgb(160,100,50) | RID20312 | RID13891 | ||
int1016 | 1016 | left parahippocampal gyrus | rgb(250,250,250) | RID20306 | RID13956 | ||
int1017 | 1017 | left paracentral lobule | rgb(60,175,80) | RID27593 | RID14112 | ||
int1018 | 1018 | opercular part of left inferior frontal gyrus | rgb(70,180,30) | RID22705 | RID13978 | ||
int1019 | 1019 | orbital part of left inferior frontal gyrus | rgb(220,180,140) | RID22708 | RID13981 | ||
int1020 | 1020 | triangular part of left inferior frontal gyrus | rgb(220,60,20) | RID22702 | RID13975 | ||
int1021 | 1021 | left visual cortex | rgb(120,100,60) | RID25841 | RID25841 | ||
int1022 | 1022 | left postcentral gyrus | rgb(195,40,40) | RID20334 | RID13928 | ||
int1023 | 1023 | left posterior cingulate gyrus | rgb(220,180,220) | RID20378 | RID14049 | ||
int1024 | 1024 | left precentral gyrus | rgb(95,75,175) | RID20275 | RID13912 | ||
int1025 | 1025 | left precuneus | rgb(160,140,180) | RID20346 | RID13963 | ||
int1026 | 1026 | rostral part of left anterior cingulate gyrus | rgb(80,20,140) | RID26838 | RID26838 | CCAX-RID26838-S | look at structure id |
int1027 | 1027 | anterior part of left middle frontal gyrus | rgb(75,50,125) | RID26832 | RID14069 | ||
int1028 | 1028 | left superior frontal gyrus | rgb(50,160,150) | RID20269 | RID13903 | ||
int1029 | 1029 | left superior parietal lobule | rgb(20,180,140) | RID20343 | RID14110 | may include precuneus in labeling | |
int1030 | 1030 | left superior temporal gyrus | rgb(140,220,220) | RID20309 | RID13889 | ||
int1031 | 1031 | left supramarginal gyrus | rgb(80,160,20) | RID20337 | RID13930 | May include angular gyrus | |
int1032 | 1032 | left frontal pole | rgb(100,0,100) | RID26767 | RID20409 | ||
int1033 | 1033 | left temporal pole | rgb(70,70,70) | RID26770 | RID20416 | ||
int1034 | 1034 | left transverse temporal gyrus | rgb(150,150,200) | RID20330 | RID26543 | ||
int1035 | 1035 | limen of left insula | rgb(145,50,65) | RID26595 | |||
int2000 | 2000 | unsegmented region of right insula | rgb(80,196,98) | RID13870 | RID13870 | CCAX-RID13870-U | |
int2001 | 2001 | right superior temporal gyrus (banks of right superior temporal sulcus) | rgb(25,100,40) | RID20308 | RID13888 | ||
int2002 | 2002 | caudal part of right anterior cingulate gyrus | rgb(125,100,160) | RID26840 | RID26840 | CCAX-RID26840-S | |
int2003 | 2003 | posterior part of right middle frontal gyrus | rgb(100,25,0) | RID26834 | RID14074 | ||
int2005 | 2005 | right cuneus | rgb(220,20,100) | RID20355 | RID26551 | ||
int2006 | 2006 | right ambiens gyrus | rgb(220,20,100) | RID26594 | RID26594 | ||
int2007 | 2007 | right fusiform gyrus | rgb(180,220,140) | RID20317 | RID26540 | ||
int2008 | 2008 | unsegmented region of right inferior parietal lobule | rgb(185,90,185) | RID15673 | RID14107 | CCAX-RID14107-U | |
int2009 | 2009 | right inferior temporal gyrus | rgb(180,40,120) | RID20314 | RID13892 | ||
int2010 | 2010 | isthmus of right cingulate gyrus | rgb(140,20,140) | RID20383 | RID14042 | ||
int2011 | 2011 | right lateral occipital gyrus | rgb(20,30,140) | RID20352 | RID13937 | ||
int2012 | 2012 | right lateral orbital gyrus | rgb(35,75,50) | RID20292 | RID13923 | ||
int2013 | 2013 | right lingual gyrus | rgb(225,140,140) | RID20358 | RID26553 | ||
int2014 | 2014 | right straight gyrus | rgb(200,35,75) | RID20277 | RID13905 | ||
int2015 | 2015 | right middle temporal gyrus | rgb(160,100,50) | RID20311 | RID13890 | ||
int2016 | 2016 | right parahippocampal gyrus | rgb(45,165,45) | RID20305 | RID13955 | ||
int2017 | 2017 | right paracentral lobule | rgb(105,205,105) | RID27592 | RID14111 | ||
int2018 | 2018 | opercular part of right inferior frontal gyrus | rgb(220,180,140) | RID22704 | RID13977 | ||
int2019 | 2019 | orbital part of right inferior frontal gyrus | rgb(20,100,50) | RID22707 | RID13980 | ||
int2020 | 2020 | triangular part of right inferior frontal gyrus | rgb(220,60,20) | RID22701 | RID13974 | ||
int2021 | 2021 | right visual cortex | rgb(120,100,60) | RID25840 | RID25840 | ||
int2022 | 2022 | right postcentral gyrus | rgb(195,40,40) | RID20333 | RID13927 | ||
int2023 | 2023 | right posterior cingulate gyrus | rgb(220,180,220) | RID20377 | RID14048 | ||
int2024 | 2024 | right precentral gyrus | rgb(95,75,175) | RID20274 | RID13911 | ||
int2025 | 2025 | right precuneus | rgb(160,140,180) | RID20345 | RID13962 | ||
int2026 | 2026 | rostral part of right anterior cingulate gyrus | rgb(80,20,140) | RID26837 | RID26837 | CCAX-RID26837-S | look at structure id |
int2027 | 2027 | anterior part of right middle frontal gyrus | rgb(75,50,125) | RID26831 | RID14068 | ||
int2028 | 2028 | right superior frontal gyrus | rgb(50,160,150) | RID20268 | RID13902 | ||
int2029 | 2029 | right superior parietal lobule | rgb(20,180,140) | RID20342 | RID14109 | may include precuneus | |
int2030 | 2030 | right superior temporal gyrus | rgb(140,220,220) | RID20308 | RID13888 | ||
int2031 | 2031 | right supramarginal gyrus | rgb(80,160,20) | RID20336 | RID13929 | may include angular gyrus | |
int2032 | 2032 | right frontal pole | rgb(100,0,100) | RID26766 | RID20408 | ||
int2033 | 2033 | right temporal pole | rgb(70,70,70) | RID26769 | RID20415 | ||
int2034 | 2034 | right transverse temporal gyrus | rgb(150,150,200) | RID20329 | RID26542 | ||
int2035 | 2035 | limen of right insula | rgb(110, 150, 120) | RID26594 | |||
int2108 | 2108 | right angular and supramarginal gyri (obsolete label) | rgb(230,250,230) | RID22701 | RID13974 | ||
int3000 | 3000 | right claustrum | rgb(230,250,230) | RID15701 | RID15701 | ||
int3001 | 3001 | left claustrum | rgb(230,155,215) | RID15700 | RID15700 | ||
int3002 | 3002 | right mammillary body | rgb(130,155,95) | RID26776 | RID26776 | ||
int3003 | 3003 | left mammillary body | rgb(155,230,255) | RID26777 | RID26777 | ||
int3004 | 3004 | corpus callosum | rgb(250,240,20) | RID6915 | RID6915 | ||
int3005 | 3005 | right fornix of forebrain | rgb(35,235,155) | RID18106 | RID18106 | ||
int3007 | 3007 | left fornix of forebrain | rgb(75,35,115) | RID18107 | RID18107 | ||
int3008 | 3008 | infundibulum of neurohypophysis | rgb(35,195,35) | RID15529 | RID15529 | ||
int3011 | 3011 | adenohypophysis | rgb(235,225,115) | RID15522 | RID15522 | ||
int3012 | 3012 | unsegmented region of neurohypophysis | rgb(220,180,205) | RID6645 | RID6645 | CCAX-RID6645-U |
Thalamic Nuclei Expansion
integer_label | text_label | color | notes | radlex_id | radlex_structure_id |
---|---|---|---|---|---|
500 | right internal medullary lamina | rgb(200,200,200) | RID18025 | RID18025 | |
501 | left internal medullary lamina | rgb(200,200,200) | RID18026 | RID18026 | |
502 | right medial geniculate body | rgb(125,250,20) | RID20560 | RID20560 | |
503 | left medial geniculate body | rgb(125,250, 20) | RID20561 | RID20561 | |
504 | right lateral geniculate body | rgb(100,180,255) | RID20562 | RID20562 | |
505 | left lateral geniculate body | rgb(100,180,255) | RID20563 | RID20563 | |
506 | right pulvinar | rgb(63,105,225) | RID20564 | RID20564 | |
507 | left pulvinar | rgb(63,105,225) | RID20565 | RID20565 | |
508 | right anterior thalamic nucleus | rgb(255,25,130) | in the old SPL-BrainAtlas-Colorfile.txt L and R are mislabeled (switched) | RID20544 | RID20544 |
509 | left anterior thalamic nucleus | rgb(255,25,130) | in the old SPL-BrainAtlas-Colorfile.txt L and R are mislabeled (switched) | RID20545 | RID20545 |
510 | right dorsomedial thalamic nucleus | rgb(60,190,130) | RID20535 | RID20535 | |
511 | left dorsomedial thalamic nucleus | rgb(60,190,130) | RID20536 | RID20536 | |
512 | right centromedian thalamic nucleus | rgb(190,180,105) | RID20568 | RID20568 | |
513 | left centromedian thalamic nucleus | rgb(190,180,105) | RID20569 | RID20569 | |
514 | right ventral anterior thalamic nucleus | rgb(255,213,0) | RID20929 | RID20929 | |
515 | left ventral anterior thalamic nucleus | rgb(255,213,0) | RID20930 | RID20930 | |
516 | right ventral lateral thalamic nucleus | rgb(60,180,180) | RID20931 | RID20931 | |
517 | left ventral lateral thalamic nucleus | rgb(60,180,180) | RID20932 | RID20932 | |
518 | right lateral posterior thalamic nucleus | rgb(205,130,0) | RID20927 | RID20927 | |
519 | left lateral posterior thalamic nucleus | rgb(205,130,0) | RID20928 | RID20928 | |
520 | right lateral dorsal thalamic nucleus | rgb(175,190,220) | RID20925 | RID20925 | |
521 | left lateral dorsal thalamic nucleus | rgb(175,190,220) | RID20926 | RID20926 | |
522 | right ventral posteromedial thalamic nucleus | rgb(225,170,105) | RID20506 | RID20506 | |
523 | left ventral posteromedial thalamic nucleus | rgb(225,170,105) | RID20507 | RID20507 | |
524 | right ventral posterolateral thalamic nucleus | rgb(230,130,130) | RID20504 | RID20504 | |
525 | left ventral posterolateral thalamic nucleus | rgb(230,130,130) | RID20505 | RID20505 |