SlicerWiki - Recent changes [en]

Slicer4:Developers

2010-09-09T13:42:02Z

Projects:

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	{\|width="800px" border="1"		{\|width="800px" border="1"
	\|-		\|-
-	\|style="background:#ddf" width="60%"\|'''~~Slicer3~~ Projects'''	+	\|style="background:#ddf" width="60%"\|'''Slicer4 Projects'''
	\|bgcolor="#ddf" valign="top"\|'''Key People'''<br/>Bold names are responsible for an aspect of the project.		\|bgcolor="#ddf" valign="top"\|'''Key People'''<br/>Bold names are responsible for an aspect of the project.
	\|-		\|-

File:SlicerAnnotationsV2-Large.png

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uploaded a new version of "[[File:SlicerAnnotationsV2-Large.png]]"

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Slicer4:UIDesign

2010-09-08T20:57:24Z

Toolbar Icons for Slicer Base Modules:

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	\|-		\|-
	\| SlicerAnnotationsV2.png		\| SlicerAnnotationsV2.png
-	\| [[image:SlicerAnnotationsV2-Large.png ]]	+	\| [[image:SlicerAnnotationsV2-Large.png]]
	\| [[image:SlicerAnnotationsV2-Medium.png]]		\| [[image:SlicerAnnotationsV2-Medium.png]]
	\| [[image:SlicerAnnotationsV2-Small.png]]		\| [[image:SlicerAnnotationsV2-Small.png]]

File:SlicerAnnotationsV2-Large.png

2010-09-08T20:55:53Z

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Slicer4:UIDesign

2010-09-08T20:53:21Z

Toolbar Icons for Slicer Base Modules:

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	\|-		\|-
	\| SlicerAnnotationsV2.png		\| SlicerAnnotationsV2.png
-	\| [[image:SlicerAnnotationsV2-Large.png]]	+	\| [[image:SlicerAnnotationsV2-Large.png ]]
	\| [[image:SlicerAnnotationsV2-Medium.png]]		\| [[image:SlicerAnnotationsV2-Medium.png]]
	\| [[image:SlicerAnnotationsV2-Small.png]]		\| [[image:SlicerAnnotationsV2-Small.png]]

File:SlicerAnnotationsV2-Large.png

2010-09-08T20:49:26Z

uploaded a new version of "[[File:SlicerAnnotationsV2-Large.png]]"

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Slicer4:UIDesign

2010-09-08T20:46:51Z

Toolbar Icons for Slicer Base Modules:

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	\| [[image:SlicerFiducials-Original.png]]		\| [[image:SlicerFiducials-Original.png]]
	\| Slicer4 Application Toolbar		\| Slicer4 Application Toolbar
		+	\|-
		+	\| SlicerAnnotationsV2.png
		+	\| [[image:SlicerAnnotationsV2-Large.png]]
		+	\| [[image:SlicerAnnotationsV2-Medium.png]]
		+	\| [[image:SlicerAnnotationsV2-Small.png]]
		+	\| [[image:SlicerAnnotationsV2-Original.png]]
		+	\| Slicer4 Application Toolbar
	\|-		\|-
	\| SlicerAnnotations.png		\| SlicerAnnotations.png
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	\| [[image:SlicerAnnotations-Original.png]]		\| [[image:SlicerAnnotations-Original.png]]
	\| Slicer4 Application Toolbar		\| Slicer4 Application Toolbar
-	\|-
-	~~\| SlicerAnnotationsV2.png~~
-	~~\| [[image:SlicerAnnotationsV2-Large.png]]~~
-	~~\| [[image:SlicerAnnotationsV2-Medium.png]]~~
-	~~\| [[image:SlicerAnnotationsV2-Small.png]]~~
-	~~\| [[image:SlicerAnnotationsV2-Original.png]]~~
-	~~\| Slicer4 Application Toolbar (pick which one to use!)~~
	\|-		\|-
	\| SlicerEMSegment.png		\| SlicerEMSegment.png

File:SlicerAnnotationsV2-Large.png

2010-09-08T20:40:51Z

uploaded a new version of "[[File:SlicerAnnotationsV2-Large.png]]"

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File:SlicerAnnotationsV2-Original.png

2010-09-08T20:39:48Z

uploaded "[[File:SlicerAnnotationsV2-Original.png]]"

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File:SlicerAnnotationsV2-Large.png

2010-09-08T20:39:01Z

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File:SlicerAnnotationsV2-Medium.png

2010-09-08T20:38:30Z

uploaded "[[File:SlicerAnnotationsV2-Medium.png]]"

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Slicer4:UIDesign

2010-09-08T20:37:41Z

Toolbar Icons for Slicer Base Modules:

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	\| [[image:SlicerAnnotations-Original.png]]		\| [[image:SlicerAnnotations-Original.png]]
	\| Slicer4 Application Toolbar		\| Slicer4 Application Toolbar
		+	\|-
		+	\| SlicerAnnotationsV2.png
		+	\| [[image:SlicerAnnotationsV2-Large.png]]
		+	\| [[image:SlicerAnnotationsV2-Medium.png]]
		+	\| [[image:SlicerAnnotationsV2-Small.png]]
		+	\| [[image:SlicerAnnotationsV2-Original.png]]
		+	\| Slicer4 Application Toolbar (pick which one to use!)
	\|-		\|-
	\| SlicerEMSegment.png		\| SlicerEMSegment.png

Slicer3:3.6 Final Issues

2010-09-08T20:23:14Z

TODO: Issues to fix for the 3.6.2 patch release:

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	* Make EMSegmenter works on 3D MRI brain images		* Make EMSegmenter works on 3D MRI brain images
	* [[Slicer3:Editor_Tuning_3.6.2\|Several tweaks to the Editor Module]] (Steve)		* [[Slicer3:Editor_Tuning_3.6.2\|Several tweaks to the Editor Module]] (Steve)
		+	* Ordering of the series by number in DICOM browser [http://na-mic.org/Mantis/view.php?id=965 965]

	=== DONE: Issues fixed for inclusion in Slicer 3.6.2 ===		=== DONE: Issues fixed for inclusion in Slicer 3.6.2 ===

File:SlicerEMSegment-Original.png

2010-09-08T18:58:27Z

uploaded "[[File:SlicerEMSegment-Original.png]]"

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Slicer4:UIDesign

2010-09-08T18:56:56Z

Toolbar Icons for Slicer Base Modules:

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	\| [[image:SlicerAnnotations-Small.png]]		\| [[image:SlicerAnnotations-Small.png]]
	\| [[image:SlicerAnnotations-Original.png]]		\| [[image:SlicerAnnotations-Original.png]]
		+	\| Slicer4 Application Toolbar
		+	\|-
		+	\| SlicerEMSegment.png
		+	\| [[image:SlicerEMSegment-Large.png]]
		+	\| [[image:SlicerEMSegment-Medium.png]]
		+	\| [[image:SlicerEMSegment-Small.png]]
		+	\| [[image:SlicerEMSegment-Original.png]]
	\| Slicer4 Application Toolbar		\| Slicer4 Application Toolbar
	\|-		\|-

File:SlicerAnnotations-Original.png

2010-09-08T15:29:18Z

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File:SlicerAnnotations-Small.png

2010-09-08T15:17:19Z

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File:SlicerAnnotations-Medium.png

2010-09-08T15:16:52Z

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File:SlicerAnnotations-Large.png

2010-09-08T15:16:19Z

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Slicer3:3.6 Final Issues

2010-09-08T15:10:44Z

TODO: Issues to fix for the 3.6.2 patch release:

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	* It seems that the camera does not transform correctly under transform node (NOT ASSIGNED). http://na-mic.org/Mantis/view.php?id=957		* It seems that the camera does not transform correctly under transform node (NOT ASSIGNED). http://na-mic.org/Mantis/view.php?id=957
	* in the editor module replace the words "Check Points" with the word "Undo" and compress saved label maps into stencils (Steve)		* in the editor module replace the words "Check Points" with the word "Undo" and compress saved label maps into stencils (Steve)
-	* EMSegmenter works on 3D MRI brain images	+	* Make EMSegmenter works on 3D MRI brain images
	* [[Slicer3:Editor_Tuning_3.6.2\|Several tweaks to the Editor Module]] (Steve)		* [[Slicer3:Editor_Tuning_3.6.2\|Several tweaks to the Editor Module]] (Steve)

File:SlicerAnnotations-Original.png

2010-09-07T20:55:45Z

uploaded a new version of "[[File:SlicerAnnotations-Original.png]]"

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File:SlicerAnnotations-Small.png

2010-09-07T20:55:22Z

uploaded a new version of "[[File:SlicerAnnotations-Small.png]]"

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File:SlicerAnnotations-Medium.png

2010-09-07T20:55:00Z

uploaded a new version of "[[File:SlicerAnnotations-Medium.png]]"

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File:SlicerAnnotations-Large.png

2010-09-07T20:54:26Z

uploaded a new version of "[[File:SlicerAnnotations-Large.png]]"

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File:SlicerAnnotations-Original.png

2010-09-07T20:28:12Z

uploaded "[[File:SlicerAnnotations-Original.png]]"

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Slicer4:UIDesign

2010-09-07T20:26:27Z

Toolbar Icons for Slicer Base Modules:

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	\| [[image:SlicerFiducials-Small.png]]		\| [[image:SlicerFiducials-Small.png]]
	\| [[image:SlicerFiducials-Original.png]]		\| [[image:SlicerFiducials-Original.png]]
		+	\| Slicer4 Application Toolbar
		+	\|-
		+	\| SlicerAnnotations.png
		+	\| [[image:SlicerAnnotations-Large.png]]
		+	\| [[image:SlicerAnnotations-Medium.png]]
		+	\| [[image:SlicerAnnotations-Small.png]]
		+	\| [[image:SlicerAnnotations-Original.png]]
	\| Slicer4 Application Toolbar		\| Slicer4 Application Toolbar
	\|-		\|-

File:SlicerAdvancedGear-Original.png

2010-09-07T20:25:39Z

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Slicer4:UIDesign

2010-09-07T20:23:59Z

Slicer Information Icons:

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	\| [[image:SlicerInfoRight-Small.png]]		\| [[image:SlicerInfoRight-Small.png]]
	\| [[image:SlicerInfoRight-Original.png]]		\| [[image:SlicerInfoRight-Original.png]]
		+	\| Slicer4 Application (anywhere)
		+	\|-
		+	\| SlicerAdvancedGear.png
		+	\| [[image:SlicerAdvancedGear-Large.png]]
		+	\| [[image:SlicerAdvancedGear-Medium.png]]
		+	\| [[image:SlicerAdvancedGear-Small.png]]
		+	\| [[image:SlicerAdvancedGear-Original.png]]
	\| Slicer4 Application (anywhere)		\| Slicer4 Application (anywhere)
	\|-		\|-
	\|}		\|}

Slicer4:QtPort/MeetingNotes

2010-09-07T15:29:57Z

Meeting Notes:

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	[[Slicer4:QtPort\|QtPort]]←		[[Slicer4:QtPort\|QtPort]]←
	=Meeting Notes=		=Meeting Notes=
		+	===August 12, 13 2010===
		+	http://www.na-mic.org/Wiki/index.php/QtAugust2010#Draft_Timeline_.26_To-Do_list

	===May 4, 2010===		===May 4, 2010===

Slicer-3-6-FAQ

2010-09-07T14:00:23Z

New page

[[Documentation-3.6#Introduction|Back to Slicer 3.6 Introduction]]

This page contains frequently asked questions related to Slicer 3.6

=Interactive Editor=
==I would like to segment more than one structure==
Use the [[Modules:Editor-Documentation-3.6|Per-Structure Volumes feature]] to create label volumes for each structure that you would like to segment interactively. After successful segmentation of all the structures, the individual label volumes can be merged.

=Diffusion=
==I have DICOM DWI images. What do I need to do to process them in Slicer?==
DWI formats are not properly standardized (as of 2010). In many cases, vendors put important information about gradients into the private fields. Our [[Modules:DicomToNRRD-3.6|DICOM to NRRD converter]] has an extensive library of such special cases. Convert your DWI images to a NRRD volume, before beginning the post processing.==

==I have streamlines from DTI and would like to find the subset which goes through a particular region==
The [[Modules:ROISelect-Documentation-3.6|ROI selection module]] in Slicer 3.6 allows to filter for streamlines which pass (or do not pass) through label map ROI's

Modules:Data-Documentation-3.6

2010-09-07T13:42:47Z

Usage:

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	* Edit Properties... for a specific node in order to change it's attributes (right mouse menu).		* Edit Properties... for a specific node in order to change it's attributes (right mouse menu).
	* Load and import MRML Scenes and individual datasets.		* Load and import MRML Scenes and individual datasets.
		+	* Harden transforms for models and volumes under transform nodes (edits the Orientation of the data so that it will be included when saving in standard file formats).

	===Examples, Use Cases & Tutorials===		===Examples, Use Cases & Tutorials===