Slicer3:Module Documentation

From SlicerWiki

Contents 1 Slicer3 Base Modules 2 Converter Modules 3 Demonstration Modules 4 Diffusion Tensor Modules 4.1 Estimation 4.2 Test 5 Diffusion Weighted Imaging Modules 5.1 Test 6 Filtering Modules 6.1 Arithmetic 6.2 DWI 6.3 Denoising 6.4 Morphology 7 Model Generation Modules 8 Registration Modules 9 Segmentation Modules 10 Tractography Modules

Slicer3 Base Modules

• Cameras
• Color
• Data
• EMSegment
• Editor
• Fiducials
• Gradient Anisotropic Diffusion Filter
• Models
• NeuroNav
• QueryAtlas
• Qdec
• Slices
• Transforms
• Volumes

Converter Modules

• Create a DICOM Series
• GE DICOM to NRRD Converter

Demonstration Modules

• Execution Model Tour

Diffusion Tensor Modules

Estimation

• Diffusion Tensor Estimation

Test

• Simple IO Test

Diffusion Weighted Imaging Modules

Test

• Simple DWI IO Test

Filtering Modules

• Checkerboard Filter
• Histogram Matching
• Otsu Threshold
• Resample Volume
• Voting Binary Hole Filling
• Rician noise removal in tensor images

Arithmetic

• Add Images
• Subtract Images

DWI

• Rician noise removal in DWI

Denoising

• Curvature Anisotropic Diffusion
• Gradient Anisotropic Diffusion
• Median Filter

Morphology

• Grayscale Fill Hole
• Grayscale Grind Peak

Model Generation Modules

• Grayscale Model Maker
• Model Maker

Registration Modules

• Affine Registration
• Deformable BSpline Registration
• Linear Registration

Segmentation Modules

• Otsu Threshold Segmentation
• Simple Region Growing

Tractography Modules

• Tractography