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Title

Authors

1998

Collection

Reference

Lower Left Temporal Lobe MRI Volumes in Patients with First-episode Schizophrenia Compared with Psychotic Patients with First-episode Affective Disorder and Normal Subjects

Hirayasu Y., Shenton M.E., Salisbury D.F., Dickey C.C., Fischer I.A., Mazzoni P., Kisler T., Arakaki H., Kwon J.S., Anderson J.E., Yurgelun-Todd D., Tohen M., McCarley R.W.

Oct-1998

SPL, PNL, SLICER

Am J Psychiatry. 1998 Oct;155(10):1384-91.

Title

Authors

1999

Collection

Reference

An Integrated Visualization System for Surgical Planning and Guidance using Image Fusion and Interventional Imaging

Gering D.T., Nabavi A., Kikinis R., Grimson W.E.L., Hata N., Everett P., Jolesz F.A., Wells III W.M.

Sep-1999

SPL, NAC, NCIGT, SLICER, SNR

Int Conf Med Image Comput Comput Assist Interv. 1999;2:809-819.

Title

Authors

2000

Collection

Reference

Interventional and Intraoperative Magnetic Resonance Imaging

Kettenbach J., Kacher D.F., Koskinen S.K., Silverman S.G., Nabavi A., Gering D., Tempany C.M., Schwartz R.B., Kikinis R., Black P.M., Jolesz F.A.

Jan-2000

SPL, NCIGT, SLICER

Annu Rev Biomed Eng. 2000;2:661-90.

Volume Assessment of the Normal Female Cervix with MR Imaging: Comparison of the Segmentation Technique and Two Geometric Formula

Dumanli H., Fielding J.R., Gering D.T., Kikinis R.

Jul-2000

SPL, SLICER

Acad Radiol. 2000 Jul;7(7):502-5.

Planum Temporale and Heschl Gyrus Volume Reduction in Schizophrenia: A Magnetic Resonance Imaging Study of First-Episode Patients

Hirayasu Y., McCarley R.W., Salisbury D.F., Tanaka S., Kwon J.S., Frumin M., Snyderman D., Yurgelun-Todd D., Kikinis R., Jolesz F.A., Shenton M.E.

Jul-2000

SPL, NAC, PNL, SLICER

Arch Gen Psychiatry. 2000 Jul;57(7):692-9.

Separation of Conjoined Twins with the Twin Reversed-arterial-perfusion Sequence After Prenatal Planning with Three-dimensional Modeling

Norwitz E.R., Hoyte L.P., Jenkins K.J., van der Velde M.E., Ratiu P., Rodriguez-Thompson D., Wilkins-Haug L., Tempany C.M., Fishman S.J.

Aug-2000

SPL, NCIGT, SLICER

N Engl J Med. 2000 Aug 10;343(6):399-402.

Transperineal Magnetic Resonance Image Guided Prostate Biopsy.

D'Amico A.V., Tempany C.M., Cormack R., Hata N., Jinzaki M., Tuncali K., Weinstein M., Richie J.P.

Aug-2000

SPL, NCIGT, SLICER, SNR

J Urol. 2000 Aug;164(2):385-7.

diSNei: A Collaborative Environment for Medical Images Analysis and Visualization

Alberola-Lopez C., Cardenes R., Martın M., Martın M.A., Rodrıguez-Florido M.A., Ruiz-Alzola J.

Oct-2000

SPL, LMI, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2000;3:814-823.

Distributed Modular Computer−Integrated Surgical Robotic Systems: Architecture for Intelligent Object Distribution

Schorr O., Hata N., Bzostek A., Kumar R., Burghart C., Taylor R.H., Kikinis R.

Oct-2000

SPL, NA-MIC, NAC, SLICER, SNR

Int Conf Med Image Comput Comput Assist Interv. 2000;3:979-987.

A 3-D System for Planning and Simulating Minimally-Invasive Distraction Osteogenesis of the Facial Skeleton

Everett P.C., Seldin E.B., Troulis M., Kaban L.B., Kikinis R.

Oct-2000

SPL, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2000;3:1029-1039.

Distributed Modular Computer-Integrated Surgical Robotic Systems: Implementation using Modular Software and Networked Systems

Bzostek A., Kumar R., Hata N., Schorr O., Kikinis R., Taylor R.H.

Oct-2000

NAC, NA-MIC, SLICER, SNR, SPL

Int Conf Med Image Comput Comput Assist Interv. 2000;3:969-978.

Pre- and Intra-operative Planning and Simulation of Percutaneous Tumor Ablation

Butz T., Warfield S.K., Tuncali K., Silverman S.G., van Sonnenberg E., Jolesz F.A., Kikinis R.

Oct-2000

SPL, NCIGT, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2000;3:317-326.

MR Compatible Surgical Assist Robot: System Integration and Preliminary Feasibility Study

Chinzei K., Hata N., Jolesz F.A., Kikinis R.

Oct-2000

SPL, NCIGT, SLICER, SNR

Int Conf Med Image Comput Comput Assist Interv. 2000;3:921-930.

Simulation of Corticospinal Tract Displacement in Patients with Brain Tumors

Kaus M.R., Nabavi A., Mamisch C.T., Wells III W.M., Jolesz F.A., Kikinis R.

Oct-2000

SPL, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2000;3:9-18.

Title

Authors

2001

Collection

Reference

Integration of Interventional MRI with Computer-assisted Surgery

Jolesz F.A., Nabavi A., Kikinis R.

Jan-2001

NCIGT, NAC, SLICER, SPL

J Magn Reson Imaging. 2001 Jan;13(1):69-77.

Neurosurgical Procedures in a 0.5 Tesla, Open-Configuration Intraoperative MRI: Planning, Visualization And Navigation

Nabavi A., Kacher D.F., Gering D.T., Pergolizzi R.S.

Jan-2001

NAC, SLICER, SPL

Automedica 2001; 00:1-35.

Automated segmentation of MR images of brain tumors

Kaus M.R., Warfield S.K., Nabavi A., Black P.M., Jolesz F.A., Kikinis R.

Feb-2001

SPL, NAC, SLICER

Radiology. 2001 Feb;218(2):586-91.

Advances in Biomedical Imaging

Tempany C.M., McNeil B.J.

Feb-2001

NCIGT, SLICER

JAMA. 2001 Feb 7;285(5):562-7.

In-utero Three-dimensional Magnetic Resonance Imaging of Fetal Brains

Schierlitz L., Dumanli H., Robinson J.N., Burrows P.E., Schreyer A.G., Kikinis R., Jolesz F.A., Tempany C.M.

Apr-2001

SPL, NCIGT, SLICER

Lancet. 2001 Apr 14;357(9263):1177-8.

Serial Intraoperative Magnetic Resonance Imaging of Brain Shift

Nabavi A., Black P.M., Gering D.T., Westin C-F., Mehta V., Pergolizzi R.S., Ferrant M., Warfield S.K., Hata N., Schwartz R.B., Wells III W.M., Kikinis R., Jolesz F.A.

Apr-2001

NAC, LMI, NCIGT, SLICER, SNR, SPL

Neurosurgery. 2001 Apr;48(4):787-97; discussion 797-8.

Annotation of Processed Image Data in Surgical Planning and its Visualization with a Java3D Based Browser Visualization with a Java3D Based Browser

Sennst D-A.

May-2001

SPL, SLICER

Master's Thesis, University of Heidelberg, Germany, 2001

An Integrated Visualization System for Surgical Planning and Guidance Using Image Fusion and an Open MR

Gering D.T., Nabavi A., Kikinis R., Hata N., O'Donnell L.J., Grimson W.E.L., Jolesz F.A., Black P.M., Wells III W.M.

Jun-2001

SPL, NAC, NCIGT, SLICER, SNR

J Magn Reson Imaging. 2001 Jun;13(6):967-75.

A Functional Magnetic Resonance Imaging Study of Auditory Mismatch in Schizophrenia

Wible C.G., Kubicki M., Yoo S-S., Kacher D.F., Salisbury D.F., Anderson M.C., Shenton M.E., Hirayasu Y., Kikinis R., Jolesz F.A., McCarley R.W.

Jun-2001

PNL, NCIGT, SLICER, SPL

Am J Psychiatry. 2001 Jun;158(6):938-43.

Two- and 3-dimensional MRI Comparison of Levator Ani Structure, Volume, and Integrity in Women With Stress Incontinence and Prolapse

Hoyte L., Schierlitz L., Zou K.H., Flesh G., Fielding J.R.

Jul-2001

SPL, SLICER

Am J Obstet Gynecol. 2001 Jul;185(1):11-9.

MR Imaging-guided Prostate Biopsy with Surgical Navigation Software: Device Validation and Feasibility

Hata N., Jinzaki M., Kacher D., Cormak R., Gering D., Nabavi A., Silverman S.G., D A.V., Kikinis R., Jolesz F.A., Tempany C.M.

Jul-2001

SPL, NAC, NCIGT, SLICER, SNR

Radiology. 2001 Jul;220(1):263-8.

Variations in Levator Ani Volume and Geometry in Women: The Application of MR Based 3D Reconstruction in Evaluating Pelvic Floor Dysfunction

Hoyte L., Fielding J.R., Versi E., Mamisch C., Kolvenbach C., Kikinis R.

Aug-2001

SPL, SLICER

Arch Esp Urol. 2001 Jul-Aug;54(6):532-9.

CURVES: Curve Evolution for Vessel Segmentation

Lorigo L.M., Faugeras O.D., Grimson W.E.L., Keriven R., Kikinis R., Nabavi A., Westin C-F.

Sep-2001

NAC, LMI, SLICER, SPL

Med Image Anal. 2001 Sep;5(3):195-206.

Linear Measurements in 2-dimensional Pelvic Floor imaging: The Impact of Slice Tilt Angles on measurement Reproducibility

Hoyte L., Ratiu P.

Sep-2001

SPL, SLICER

Am J Obstet Gynecol. 2001 Sep;185(3):537-44.

Semi-Automatic Medical Image Segmentation

O'Donnell L.

Oct-2001

SPL, SLICER

Master's Thesis, MIT, 2001.

An Interactive Virtual Endoscopy Tool

Nain D., Haker S., Kikinis R., Grimson W.E.L.

Oct-2001

SPL, NAC, SLICER

Satellite Workshop Int Conf Med Image Comput Comput Assist Interv. 2001;4.

Double Cervix and Vagina with Septate Uterus: An Uncommon Müllerian Malformation

Hundley A.F., Fielding J.R., Hoyte L.

Nov-2001

SPL, SLICER

Obstet Gynecol. 2001 Nov;98(5 Pt 2):982-5.

Evaluation of Three-dimensional Finite Element-based Deformable Registration of Pre- and Intraoperative Prostate Imaging

Bharatha A., Hirose M., Hata N., Warfield S.K., Ferrant M., Zou K.H., Suarez-Santana E., Ruiz-Alzola J., D A., Cormack R.A., Kikinis R., Jolesz F.A., Tempany C.M.

Dec-2001

SPL, NCIGT, SLICER, SNR

Med Phys. 2001 Dec;28(12):2551-60.

Title

Authors

2002

Collection

Reference

High-Resolution Line Scan Diffusion Tensor MR Imaging of White Matter Fiber Tract Anatomy

Mamata H., Mamata Y., Westin C-F., Shenton M.E., Kikinis R., Jolesz F.A., Maier S.E.

Jan-2002

SPL, LMI, NAC, NCIGT, PNL, SLICER

Am J Neuroradiol. 2002 Jan;23(1):67-75.

Tumor Detection by Virtual Cystoscopy with Color Mapping of Bladder Wall Thickness

Fielding J.R., Hoyte L., Okon S.A., Schreyer A., Lee J., Zou K.H., Warfield S.K., Richie J.P., Loughlin K.R., O’Leary M.P., Doyle C.J., Kikinis R.

Feb-2002

SPL, SLICER

J Urol. 2002 Feb;167(2 Pt 1):559-62.

Processing and Visualization for Diffusion Tensor MRI

Westin C-F., Maier S.E., Mamata H., Nabavi A., Jolesz F.A., Kikinis R.

Jun-2002

SPL, LMI, NAC, NCIGT, SLICER

Med Image Anal. 2002 Jun;6(2):93-108.

3D Visualisation of the Middle Ear and Adjacent Structures Using Reconstructed Multi-slice CT Datasets, Correlating 3D Images and Virtual Endoscopy to the 2D Cross-sectional Images

Rodt T., Ratiu P., Becker H., Bartling S., Kacher D.F., Anderson M., Jolesz F.A., Kikinis R.

Sep-2002

SPL, NCIGT, SLICER

Neuroradiology. 2002 Sep;44(9):783-90.

New Approaches to Estimation of White Matter Connectivity in Diffusion Tensor MRI: Elliptic PDEs and Geodesics in a Tensor-Warped Space

O'Donnell L., Haker S., Westin C-F.

Sep-2002

LMI, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2002;5(Pt 1):459-466.

Technical Developments for MR-Guided Microwave Thermocoagulation Therapy of Liver Tumors

Morikawa S., Inubushi T., Kurumi Y., Naka S., Sato K., Tani T., Hata N., Seshan V., Haque H.A.

Sep-2002

SNR, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2002;5(Pt 2):52-59.

Diffusion Tensor Imaging and Its Application to Neuropsychiatric Disorders

Kubicki M., Westin C-F., Maier S.E., Mamata H., Frumin M., Ersner-Hershfield H., Kikinis R., Jolesz F.A., McCarley R.W., Shenton M.E.

Dec-2002

SPL, LMI, NAC, PNL, SLICER

Harv Rev Psychiatry. 2002 Nov-Dec;10(6):324-36.

Title

Authors

2003

Collection

Reference

Progressive Decrease of Left Superior Temporal Gyrus Gray Matter Volume in Patients With First-Episode Schizophrenia

Kasai K., Shenton M.E., Salisbury D.F., Hirayasu Y., Lee C-U., Ciszewski A.A., Yurgelun-Todd D., Kikinis R., Jolesz F.A., McCarley R.W.

Jan-2003

SPL, NCIGT, PNL, SLICER

Am J Psychiatry. 2003 Jan;160(1):156-64.

Planning, Simulation and Assistance with Intraoperative MRI.

Chinzei K., Warfield S.K., Hata N., Tempany C.M., Jolesz F.A., Kikinis R.

Mar-2003

SNR, CRL, NAC, NCIGT, SLICER, SPL

Minim Invasive Ther Allied Technol. 2003 Mar;12(1):59-64.

MR imaging-guided Focused Ultrasound Surgery of Uterine Leiomyomas: A Feasibility Study

Tempany C.M., Stewart E.A., McDannold N., Quade B.J., Jolesz F.A., Hynynen K.

Mar-2003

FUS, NCIGT, SLICER

Radiology. 2003 Mar;226(3):897-905.

Three-dimensional Magnetic Resonance Imaging Assessment of Levator Ani Morphologic Features in Different Grades of Prolapse

Singh K., Jakab M., Reid W.M.N., Berger L.A., Hoyte L.

Apr-2003

SPL, SLICER

Am J Obstet Gynecol. 2003 Apr;188(4):910-5.

Incorporation of Diffusion Tensor MRI in Non-Rigid Registration for Image-Guided Neurosurgery

Kemper C.A.

Jun-2003

SPL, SLICER

Master's Thesis, MIT, 2003.

Surgical Navigation in The Open MRI

Nabavi A., Gering D.T., Kacher D.F., Talos I-F., Wells III W.M., Kikinis R., Black P.M., Jolesz F.A.

Jun-2003

SPL, CRL, NAC, NCIGT, SLICER, SNR

Acta Neurochir Suppl. 2003;85:121-5.

Three-dimensional Reconstruction of Magnetic Resonance Images of The Anal Sphincter and Correlation Between Sphincter Volume and Pressure

Cornella J.L., Hibner M., Fenner D.E., Kriegshauser J.S., Hentz J., Magrina J.F.

Jul-2003

SLICER

Am J Obstet Gynecol. 2003 Jul;189(1):130-5.

Holographic Video Display of Time-series Volumetric Medical Data

Plesniak W.J., Halle M., Pieper S.D., Wells III W.M., Jakab M., Meier D.S., Benton S.A., Guttmann C.R.G., Kikinis R.

Oct-2003

SPL, CNI, NAC, SLICER

Proceedings of the 14th IEEE Visualization Conference 2003;

The Association of Cartilage Volume with Knee Pain

Hunter D.J., March L., Sambrook P.N.

Oct-2003

SLICER

Osteoarthritis Cartilage. 2003 Oct;11(10):725-9.

Differences and Similarities in Insular and Temporal Pole MRI Gray Matter Volume Abnormalities in First-episode Schizophrenia and Affective Psychosis

Kasai K., Shenton M.E., Salisbury D.F., Onitsuka T., Toner S.K., Yurgelun-Todd D., Kikinis R., Jolesz F.A., McCarley R.W.

Nov-2003

NAC, NCIGT, PNL, SLICER, SPL

Arch Gen Psychiatry. 2003 Nov;60(11):1069-77.

Progressive Decrease of Left Heschl Gyrus and Planum Temporale Gray Matter Volume in First-Episode Schizophrenia. A Longitudinal Magnetic Resonance Imaging Study

Kasai K., Shenton M.E., Salisbury D.F., Hirayasu Y., Onitsuka T., Spencer M.H., Yurgelun-Todd D.A., Kikinis R., Jolesz F.A., McCarley R.W.

Nov-2003

SPL, NAC, NCIGT, PNL, SLICER

Arch Gen Psychiatry. 2003 Aug;60(8):766-75.

Genetic Contribution to Cartilage Volume in Women: A Classical Twin Study

Hunter D.J., Snieder H., March L., Sambrook P.N.

Dec-2003

SLICER

Rheumatology (Oxford). 2003 Dec;42(12):1495-500.

Advanced Computer Assistance for Magnetic Resonance-guided Microwave Thermocoagulation of Liver Tumors

Morikawa S., Inubushi T., Kurumi Y., Naka S., Sato K., Demura K., Tani T., Haque H.A., Tokuda J., Hata N.

Dec-2003

SLICER, SNR

Acad Radiol. 2003 Dec;10(12):1442-9.

Title

Authors

2004

Collection

Reference

Prefrontal Cortical Thickness in First-Episode Psychosis: A Magnetic Resonance Imaging Study

Wiegand L.C., Warfield S.K., Levitt J.J., Hirayasu Y., Salisbury D.F., Heckers S., Dickey C.C., Kikinis R., Jolesz F.A., McCarley R.W., Shenton M.E.

Jan-2004

PNL, CRL, NAC, SLICER, SPL

Biol Psychiatry. 2004 Jan 15;55(2):131-40.

3D SLICER

Pieper S., Halle M., Kikinis R.

Apr-2004

SPL, NAC, SLICER

Proceedings of the 1st IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2004; 1:632-635.

Improved Watershed Transform for Medical Image Segmentation Using Prior Information

Grau V., Mewes A.U.J., Alcañiz M., Kikinis R., Warfield S.K.

Apr-2004

SPL, CRL, NAC, SLICER

IEEE Trans Med Imaging. 2004 Apr;23(4):447-58.

The tale of Phineas Gage, digitally remastered

Ratiu P., Talos I-F., Haker S., Lieberman D., Everett P.

May-2004

SPL, NAC, SLICER

J Neurotrauma. 2004 May;21(5):637-43.

Abnormal Association between Reduced Magnetic Mismatch Field to Speech Sounds and Smaller Left Planum Temporale Volume in Schizophrenia

Yamasue H., Yamada H., Yumoto M., Kamio S., Kudo N., Uetsuki M., Abe O., Fukuda R., Aoki S., Ohtomo K., Iwanami A., Kato N., Kasai K.

Jun-2004

SLICER

Neuroimage. 2004 Jun;22(2):720-7.

Method for Combining Information from White Matter Fiber Tracking and Gray Matter Parcellation

Park H-J., Kubicki M., Westin C-F., Talos I-F., Brun A., Peiper S., Kikinis R., Jolesz F.A., McCarley R.W., Shenton M.E.

Sep-2004

SPL, LMI, NAC, NCIGT, PNL, SLICER

Am J Neuroradiol. 2004 Sep;25(8):1318-24.

Decreases in Ventricular Volume Correlate with Decreases in Ventricular Pressure in Idiopathic Normal Pressure Hydrocephalus Patients who Experienced Clinical Improvement After Implantation With Adjustable Valve Shunts

McConnell K.A., Zou K.H., Chabrerie A.V., Bailey N.O., Black P.M.

Sep-2004

NCIGT, SLICER

Neurosurgery. 2004 Sep;55(3):582-92; discussion 592-3.

Improved Non-rigid Registration of Prostate MRI

du Bois d'Aische A., De Craene M., Haker S., Weisenfeld N., Tempany C.M., Macq B., Warﬁeld S.K.

Sep-2004

SPL, CRL, NAC, NCIGT, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2004;7(Pt 1):845-852.

Levator ani Thickness Variations in Symptomatic and Asymptomatic Women Using Magnetic Resonance-based 3-dimensional Color Mapping

Hoyte L., Jakab M., Warfield S.K., Shott S., Flesh G., Fielding J.R.

Sep-2004

CRL, NAC, SLICER

Am J Obstet Gynecol. 2004 Sep;191(3):856-61.

Middle and Inferior Temporal Gyrus Gray Matter Volume Abnormalities in Chronic Schizophrenia: An MRI Study

Onitsuka T., Shenton M.E., Salisbury D.F., Dickey C.C., Kasai K., Toner S.K., Frumin M., Kikinis R., Jolesz F.A., McCarley R.W.

Sep-2004

SPL, PNL, SLICER

Am J Psychiatry. 2004 Sep;161(9):1603-11.

A Statistically Based Flow for Image Segmentation

Pichon E., Tannenbaum A., Kikinis R.

Sep-2004

SPL, NAC, SLICER

Med Image Anal. 2004 Sep;8(3):267-74.

Flexible Frameworks for Medical Multimedia

Halle M., Kikinis R., Plesniak W., Pieper S., McKenna M., Jolesz F.A.

Oct-2004

SPL, NA-MIC, NAC, SLICER

Proceedings of the 12th annual ACM International Conference on Multimedia 2004;12(4):768-775.

DTI and Impulsivity in Schizophrenia: A First Voxelwise Correlational Analysis

Hoptman M.J., Ardekani B.A., Butler P.D., Nierenberg J., Javitt D.C., Lim K.O.

Nov-2004

SLICER

Neuroreport. 2004 Nov 15;15(16):2467-70.

Title

Authors

2005

Collection

Reference

A Finite Element Method Model to Simulate Laser Interstitial Thermo Therapy in Anatomical Inhomogeneous Regions

Mohammed Y., Verhey J.F.

Jan-2005

SLICER

Biomed Eng Online. 2005 Jan 4;4(1):2.

An In Vivo MRI Study of Prefrontal Cortical Complexity in First-Episode Psychosis

Wiegand L.C., Warfield S.K., Levitt J.J., Hirayasu Y., Salisbury D.F., Heckers S., Bouix S., Schwartz D., Spencer M., Dickey C.C., Kikinis R., Jolesz F.A., McCarley R.W., Shenton M.E.

Jan-2005

PNL, CRL, NAC, SLICER, SPL

Am J Psychiatry. 2005 Jan;162(1):65-70.

Diffusion Tensor Magnetic Resonance imaging in Multiple Sclerosis

Goldberg-Zimring D., Mewes A.U.J., Maddah M., Warfield S.K.

Jan-2005

CRL, NAC, SLICER

J Neuroimaging. 2005;15(4 Suppl):68S-81S.

Analysis of Skeletal Movements in Mandibular Distraction Osteogenesis

Yeshwant K., Seldin E.B., Gateno J., Everett P., White C.L., Kikinis R., Kaban L.B., Troulis M.J.

Mar-2005

SPL, SLICER

J Oral Maxillofac Surg. 2005 Mar;63(3):335-40.

A Computer-assisted Approach to Planning Multidimensional Distraction Osteogenesis

Yeshwant K.C., Seldin E.B., Kikinis R., Kaban L.B.

Mar-2005

SPL, SLICER

Atlas Oral Maxillofac Surg Clin North Am. 2005 Mar;13(1):1-12.

Late Gestation Cerebellar Growth Is Rapid and Impeded by Premature Birth

Limperopoulos C., Soul J.S., Gauvreau K., Huppi P.S., Warfield S.K., Bassan H., Robertson R.L., Volpe J.J., du Plessis A.J.

Mar-2005

CRL, NAC, SLICER

Pediatrics. 2005 Mar;115(3):688-95.

Non-rigid Registration of a 3D Ultrasound and a MR Image Data Set of the Female Pelvic Floor Using a Biomechanical Model

Verhey J.F., Wisser J., Warfield S.K., Rexilius J., Kikinis R.

Mar-2005

SPL, CRL, NAC, SLICER

Biomed Eng Online. 2005 Mar 18;4(1):19.

Statistical Validation of Brain Tumor Shape Approximation via Spherical Harmonics for Image-Guided Neurosurgery

Goldberg-Zimring D., Talos I-F., Bhagwat J.G., Haker S.J., Black P.M., Zou K.H.

Apr-2005

SPL, NCIGT, SLICER

Acad Radiol. 2005 Apr;12(4):459-66.

Vaginal Thickness, Cross-Sectional Area, and Perimeter in Women with and Those without Prolapse

Hsu Y., Chen L., Delancey J.O.L., Ashton-Miller J.A.

May-2005

SLICER

Obstet Gynecol. 2005 May;105(5 Pt 1):1012-7.

Registration and Fusion of CT and MRI of the Temporal Bone

Bartling S., Peldschus K., Rodt T., Kral F., Matthies H., Kikinis R., Becker H.

May-2005

SPL, SLICER

J Comput Assist Tomogr. 2005 May-Jun;29(3):305-10.

Three-dimensional Reconstruction and Volumetry of Intracranial Haemorrhage and its Mass Effect

Strik H.M., Borchert H., Fels C., Knauth M., Rienhoff O., Bähr M., Verhey J.F.

Jun-2005

SPL, SLICER

Neuroradiology. 2005 Jun;47(6):417-24.

Rigid Overlay of Volume Sonography and MR Image Data of the Female Pelvic Floor Using a Fiducial Based Alignment--Feasibility Due to a Case Series

Verhey J.F., Wisser J., Keller T., Westin C-F., Kikinis R.

Jun-2005

SPL, LMI, SLICER

Comput Med Imaging Graph. 2005 Jun;29(4):243-9.

DTI and MTR abnormalities in schizophrenia: analysis of white matter integrity

Kubicki M., Park H-J., Westin C-F., Nestor P.G., Mulkern R.V., Maier S.E., Niznikiewicz M.A., Connor E.E., Levitt J.J., Frumin M., Kikinis R., Jolesz F.A., McCarley R.W., Shenton M.E.

Jul-2005

PNL, LMI, NAC, SLICER, SPL

Neuroimage. 2005 Jul 15;26(4):1109-18.

Magnetic Resonance-guided Prostate Interventions

Haker S., Mulkern R.V., Roebuck J.R., Barnes A.S., Dimaio S.P., Hata N., Tempany C.M.

Oct-2005

Prostate Group, NCIGT, SLICER, SNR

Top Magn Reson Imaging. 2005 Oct;16(5):355-68.

Impaired Trophic Interactions Between the Cerebellum and the Cerebrum Among Preterm Infants

Limperopoulos C., Soul J.S., Haidar H., Huppi P.S., Bassan H., Warfield S.K., Robertson R.L., Moore M., Akins P., Volpe J.J., du Plessis A.J.

Oct-2005

NAC, CRL, SLICER

Pediatrics. 2005 Oct;116(4):844-50.

2D Rigid Registration of MR Scans using the 1D Binary Projections

Kotsas P.D.

Nov-2005

SLICER

Enformatika Transactions on Engineering, Computing and Technology, November 2005; 9:157-161.

Robust Non-Rigid Registration to Capture Brain Shift from Intra-Operative MRI

Clatz O., Delingette H., Talos I-F., Golby A.J., Kikinis R., Jolesz F.A., Ayache N., Warfield S.K.

Nov-2005

SPL, CRL, NAC, NCIGT, SLICER

IEEE Trans Med Imaging. 2005 Nov;24(11):1417-27.

Open-configuration MR-guided Microwave Thermocoagulation Therapy for Metastatic Liver Tumors from Breast Cancer

Abe H., Kurumi Y., Naka S., Shiomi H., Umeda T., Naitoh H., Endo Y., Hanasawa K., Morikawa S., Tani T.

Dec-2005

SLICER

Breast Cancer. 2005;12(1):26-31.

Racial Differences in Pelvic Morphology Among Asymptomatic Nulliparous Women as Seen on Three-dimensional Magnetic Resonance Images

Hoyte L., Thomas J., Foster R.T., Shott S., Jakab M., Weidner A.C.

Dec-2005

SPL, SLICER

Am J Obstet Gynecol. 2005 Dec;193(6):2035-40.

Group-Slicer: a collaborative extension of 3D-Slicer

Simmross-Wattenberg F., Carranza-Herrezuelo N., Palacios-Camarero C., Casaseca-de-la-Higuera P., Martin-Fernandez M.A., Aja-Fernandez S., Ruiz-Alzola J., Westin C-F., Alberola-Lopez C.

Dec-2005

NAC, LMI, SLICER

J Biomed Inform. 2005 Dec;38(6):431-42.

Reproducibility of Functional MR Imaging: Preliminary Results of Prospective Multi-institutional Study Performed by Biomedical Informatics Research Network

Zou K.H., Greve D.N., Wang M., Pieper S.D., Warfield S.K., White N.S., Manandhar S., Brown G.G., Vangel M.G., Kikinis R., Wells III W.M.

Dec-2005

NAC, CRL, SLICER, SPL

Radiology. 2005 Dec;237(3):781-9.

Magnetic Resonance Imaging and 3-Dimensional Analysis of External Anal Sphincter Anatomy

Hsu Y., Fenner D.E., Weadock W.J., DeLancey J.O.L.

Dec-2005

SLICER

Obstet Gynecol. 2005 Dec;106(6):1259-65.

The Application of DTI to Investigate White Matter Abnormalities in Schizophrenia

Kubicki M., Westin C-F., McCarley R.W., Shenton M.E.

Dec-2005

LMI, PNL, SLICER

Ann N Y Acad Sci. 2005 Dec;1064:134-48.

Title

Authors

2006

Collection

Reference

A Web Portal that Enables Collaborative Use of Advanced Medical Image Processing and Informatics Tools through the Biomedical Informatics Research Network (BIRN)

Murphy S.N., Mendis M.E., Grethe J.S., Gollub R.L., Kennedy D., Rosen B.R.

Jan-2006

SLICER

AMIA Annu Symp Proc. 2006:579-83.

Robot-assisted Needle Placement in Open-MRI: System Architecture, Integration and Validation

DiMaio S.P., Pieper S., Chinzei C., Hata N., Balogh E., Fichtinger G., Tempany C.M., Kikinis R.

Jan-2006

SPL, NCIGT, SLICER, SNR

Stud Health Technol Inform. 2006;119:126-31.

Preliminary Study on Digitized Nasal and Temporal Bone Anatomy

Li X-P., Han D-M., Xia Y., Zhou G-H.

Jan-2006

SLICER

Clin Anat. 2006 Jan;19(1):32-6.

A Dorsolateral Prefrontal Cortex Semi-Automatic Segmenter

Al-Hakim R., Nain D., Melonakos J., Tannenbaum A., Fallon J.

Feb-2006

NA-MIC, SLICER

Proceedings of SPIE Medical Imaging 2006; 6144:170-177.

Measurement of the Pubic Portion of the Levator ani Muscle in Women with Unilateral Defects in 3D Models from MR Images

Chen L., Hsu Y., Ashton-Miller J.A., DeLancey J.O.L.

Mar-2006

SLICER

Int J Gynaecol Obstet. 2006 Mar;92(3):234-41.

Integrated Image and function-guided Surgery in Eloquent Cortex: A Technique Report

O'Shea J.P., Whalen S., Branco D.M., Petrovich N., Knierim K., Golby A.J.

Mar-2006

NCIGT, SLICER

Int J Med Robot. 2006 Mar;2(1):75-83.

Finite-element-method (FEM) Model Generation of Time-resolved 3D Echocardiographic Geometry Data for Mitral-valve Volumetry

Verhey J.F., Nathan N.S., Rienhoff O., Kikinis R., Rakebrandt F., D'Ambra M.N.

Mar-2006

SPL, NCIGT, SLICER

Biomed Eng Online. 2006 Mar 3;5:17.

Segmentation of Newborn Brain MRI

Weisenfeld N.I., Mewes A.U.J., Warﬁeld S.K.

Apr-2006

SPL, CRL, NAC, SLICER

Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 1:766-769.

The NA-MIC Kit: ITK, VTK, Pipelines, Grids and 3D Slicer as an Open Platform for the Medical Image Computing Community

Pieper S., Lorensen B., Schroeder W., Kikinis R.

Apr-2006

SPL, NA-MIC, NAC, SLICER

Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 1:698-701.

Measurement of Cortical Thickness in 3D Brain MRI Data: Validation of the Laplacian Method

Haidar H., Soul J.S.

Apr-2006

SPL, SLICER

J Neuroimaging. 2006 Apr;16(2):146-53.

Appearance of the Levator Ani Muscle Subdivisions in Magnetic Resonance Images

Margulies R.U., Hsu Y., Kearney R., Stein T., Umek W.H., DeLancey J.O.L.

May-2006

SLICER

Obstet Gynecol. 2006 May;107(5):1064-9.

Magnetic Resonance and the Human Brain: Anatomy, Function and Metabolism

Talos I-F., Mian A.Z., Zou K.H., Hsu L., Goldberg-Zimring D., Haker S., Bhagwat J.G., Mulkern R.V.

May-2006

NAC, NCIGT, SLICER, SPL

Cell Mol Life Sci. 2006 May;63(10):1106-24. Review.

Cerebral White Matter Analysis Using Diffusion Imaging

O'Donnell L.

May-2006

LMI, NA-MIC, NAC, SLICER

Ph.D. Thesis, MIT, 2006.

Supratentorial Low-Grade Glioma Resectability: Statistical Predictive Analysis Based on Anatomic MR Features and Tumor Characteristics

Talos I-F., Zou K.H., Ohno-Machado L., Bhagwat J.G., Kikinis R., Black P.M., Jolesz F.A.

May-2006

NAC, NCIGT, SLICER, SPL

Radiology. 2006 May;239(2):506-13.

A Method for Clustering White Matter Fiber Tracts

O'Donnell L., Kubicki M., Shenton M.E., Dreusicke M.H., Grimson W.E.L., Westin C-F.

May-2006

SPL, LMI, NA-MIC, NAC, PNL, SLICER

AJNR Am J Neuroradiol. 2006 May;27(5):1032-6.

A Preliminary DTI Study Showing no Brain Structural Change Associated with Adolescent Cannabis Use

DeLisi L.E., Bertisch H.C., Szulc K.U., Majcher M., Brown K., Bappal A., Ardekani B.A.

May-2006

SLICER

Harm Reduct J. 2006 May 9;3:17.

A Ceratopsid Dinosaur Parietal from New Mexico and its Implications for Ceratopsid Biogeography and Systematics

Farke A.A., Williamson T.E.

Jun-2006

SLICER

Journal of Vertebrate Paleontology 2006; 26:1018-1020.

Developmental Response to Cold Stress in Cranial Morphology of Rattus: Implications for the Interpretation of Climatic Adaptation in Fossil Hominins

Rae T.C., Vidarsdottir U.S., Jeffery A. N., Steegmann Jr T.

Jun-2006

SLICER

Proceedings of the Royal Society B: Biological Sciences 2006; 273:2605-2610.

Habitual Use of the Primate Forelimb is Reflected in the Material Properties of Subchondral Bone in the Distal Radius

Carlson K.J., Patel B.A.

Jun-2006

SLICER

J Anat. 2006 Jun;208(6):659-70.

Fornix Integrity and Hippocampal Volume in Male Schizophrenic Patients

Kuroki N., Kubicki M., Nestor P.G., Salisbury D.F., Park H-J., Levitt J.J., Woolston S., Frumin M., Niznikiewicz M., Westin C-F., Maier S.E., McCarley R.W., Shenton M.E.

Jul-2006

PNL, LMI, NA-MIC, SLICER

Biol Psychiatry. 2006 Jul 1;60(1):22-31.

MRI Time Series Modeling of MS Lesion Development.

Meier D.S., Guttmann C.R.G.

Aug-2006

CNI, NAC, SLICER

Neuroimage. 2006 Aug 15;32(2):531-7.

A Bayesian Approach for Stochastic White Matter Tractography

Friman O., Farnebäck G., Westin C-F.

Aug-2006

SPL, LMI, NAC, SLICER

IEEE Trans Med Imaging. 2006 Aug;25(8):965-78.

Functional MRI of Memory in the Hippocampus: Laterality Indices May Be More Meaningful if Calculated from Whole Voxel Distributions

Branco D.M., Suarez R.O., Whalen S., O'Shea J.P., Nelson A.P., da Costa J.C., Golby A.J.

Aug-2006

SPL, NCIGT, SLICER

Neuroimage. 2006 Aug 15;32(2):592-602.

Diffusion Tensor Visualization with Glyph Packing

Kindlmann G., Westin C-F.

Sep-2006

LMI, NAC, NCIGT, SLICER

IEEE Trans Vis Comput Graph 2006 Sep-Oct;12(5):1329-35.

Automated Segmentation of Multiple Sclerosis Lesion Subtypes with Multichannel MRI.

Wu Y., Warfield S.K., Tan I.L., Wells III W.M., Meier D.S., van Schijndel R.A., Barkhof F., Guttmann C.R.G.

Sep-2006

CNI, CRL, NAC, SLICER

Neuroimage. 2006 Sep;32(3):1205-15.

Image-guided Neurosurgery at Brigham and Women’s Hospital

DiMaio S.P., Archip N., Hata N., Talos I-F., Warfield S.K., Majumdar A., Mcdannold N., Hynynen K., Morrison P.R., Wells III W.M., Kacher D.F., Ellis R.E., Golby A.J., Black P.M., Jolesz F.A., Kikinis R.

Sep-2006

NCIGT, CRL, FUS, NA-MIC, SLICER, SNR, SPL

IEEE Eng Med Biol Mag. 2006 Sep-Oct;25(5):67-73.

Atlas Guided Identification of Brain Structures by Combining 3D Segmentation and SVM Classification

Akselrod-Ballin A., Galun M., Gomori M.J., Basri R., Brandt A.

Oct-2006

SLICER, Miscellaneous

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):209-16.

Affine and Deformable Registration Based on Polynomial Expansion

Farneback G., Westin C-F.

Oct-2006

SPL, LMI, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 1):857-64.

Fiber Bundle Estimation and Parameterization

Niethammer M., Bouix S., Westin C-F., Shenton M.E.

Oct-2006

PNL, LMI, NA-MIC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):252-9.

Diffusion k-tensor Estimation from Q-ball Imaging Using Discretized Principal Axes

Bergmann O., Kindlmann G., Lundervold A., Westin C-F.

Oct-2006

LMI, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):268-75.

Quantification of Levator Ani Cross-sectional Area Differences between Women with and those without Prolapse

Hsu Y., Chen L., Huebner M., Ashton-Miller J.A., DeLancey J.O.L.

Oct-2006

SLICER

Obstet Gynecol. 2006 Oct;108(4):879-83.

High-Dimensional White Matter Atlas Generation and Group Analysis

O'Donnell L., Westin C-F.

Oct-2006

LMI, NA-MIC, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):243-51.

Toward Real-Time Image Guided Neurosurgery Using Distributed and Grid Computing

Chrisochoides N., Fedorov A., Kot A., Archip N., Black P.M., Clatz O., Golby A.J., Kikinis R., Warfield S.K.

Oct-2006

SPL, CRL, SLICER

Proceedings of the ACM/IEEE conference on Supercomputing 2006; 37-50.

Characterizing the Shape of Anatomical Structures With Poisson’s Equation

Haidar H., Bouix S., Levitt J.J., McCarley R.W., Shenton M.E., Soul J.S.

Oct-2006

PNL, NA-MIC, SLICER

IEEE Trans Med Imaging. 2006 Oct;25(10):1249-57.

Liver Metastases: 3D Shape-based Analysis of CT Scans for Detection of Local Recurrence after Radiofrequency Ablation

Bricault I., Kikinis R., Morrison P.R., Vansonnenberg E., Tuncali K., Silverman S.G.

Oct-2006

SLICER, NCIGT, SPL

Radiology. 2006 Oct;241(1):243-50.

Novel Image Processing Techniques to Better Understand White Matter Disruption in Multiple Sclerosis

Goldberg-Zimring D., Warfield S.K.

Oct-2006

CRL, NAC, SLICER

Autoimmun Rev. 2006 Oct;5(8):544-8.

Segmentation of Thalamic Nuclei from DTI Using Spectral Clustering

Ziyan U., Tuch D., Westin C-F.

Oct-2006

LMI, NA-MIC, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):807-14.

Accurate Airway Wall Estimation Using Phase Congruency

San Jose Estepar R., Washko G.G., Silverman E.K., Reilly J.J., Kikinis R., Westin C-F.

Oct-2006

SPL, LMI, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):125-34.

Towards Scarless Surgery: An Endoscopic-Ultrasound Navigation System for Transgastric Access Procedures

San Jose Estepar R., Washko G.G., Silverman E.K., Reilly J.J., Kikinis R., Westin C-F.

Oct-2006

SPL, CIGL, LMI, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 1):445-53.

3D Histological Reconstruction of Fiber Tracts and Direct Comparison with Diffusion Tensor MRI Tractography

Dauguet J., Peled S., Berezovskii V., Delzescaux T., Warﬁeld S.K., Born R., Westin C-F.

Oct-2006

NA-MIC, LMI, NAC, NCIGT, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 1):109-16.

Early Detection of Schizophrenia by Diffusion Weighted Imaging

DeLisi L.E., Szulc K.U., Bertisch H., Majcher M., Brown K., Bappal A., Branch C.A., Ardekani B.A.

Nov-2006

SLICER

Psychiatry Res. 2006 Nov 22;148(1):61-6.

Middle and Inferior Temporal Gyrus Gray Matter Volume Abnormalities in First-Episode Schizophrenia: An MRI Study

Kuroki N., Shenton M.E., Salisbury D.F., Hirayasu Y., Onitsuka T., Ersner-Hershfield H., Yurgelun-Todd D., Kikinis R., Jolesz F.A., McCarley R.W.

Dec-2006

SPL, NA-MIC, NAC, PNL, SLICER

Am J Psychiatry. 2006 Dec;163(12):2103-10.

Title

Authors

2007

Collection

Reference

A Review of Diffusion Tensor Imaging Studies in Schizophrenia

Kubicki M., McCarley R.W., Westin C-F., Park H-J., Maier S.E., Kikinis R., Jolesz F.A., Shenton M.E.

Jan-2007

PNL, LMI, MIPG, NAC, SLICER, SPL

J Psychiatr Res. 2007 Jan-Feb;41(1-2):15-30.

Development of a Three-dimensional Multiscale Agent-based Tumor Model: Simulating Gene-protein Interaction Profiles, Cell Phenotypes and Multicellular Patterns in Brain Cancer

Zhang L., Athale C.A., Deisboeck T.S.

Jan-2007

SPL, SLICER

J Theor Biol. 2007 Jan 7;244(1):96-107.

The Uncinate Fasciculus and Extraversion in Schizotypal Personality Disorder: A Diffusion Tensor Imaging Study

Gurrera R.J., Nakamura M., Kubicki M., Dickey C.C., Niznikiewicz M.A., Voglmaier M.M., McCarley R.W., Shenton M.E., Westin C-F., Maier S.E., Seidman L.J.

Feb-2007

PNL, LMI, MIPG, NA-MIC, SLICER

Schizophr Res. 2007 Feb;90(1-3):360-2.

Attentional Networks and Cingulum Bundle in Chronic Schizophrenia

Nestor P.G., Kubicki M., Spencer K.M., Niznikiewicz M., McCarley R.W., Shenton M.E.

Feb-2007

PNL, SLICER

Schizophr Res. 2007 Feb;90(1-3):308-15.

Morphology, Constraints, and Scaling of Frontal Sinuses in the Hartebeest, Alcelaphus Buselaphus (Mammalia: Artiodactyla, Bovidae)

Farke A.A.

Mar-2007

SPL, SLICER

J Morphol. 2007 Mar;268(3):243-53.

A Preliminary Study on the Relationship between Nasal Cavity and Maxillary Sinus Volumes

Butaric L., Broadfield D., McCarthy R.

Mar-2007

SLICER

Proceedings of the 76th Annual Meeting of the American Association of Physical Anthropologists 2007;

Origin and Insertion Points Involved in Levator Ani Muscle Defects

Margulies R.U., Huebner M., DeLancey J.O.L.

Mar-2007

SLICER

Am J Obstet Gynecol. 2007 Mar;196(3):251.e1-5.

Perinatal Risk Factors Altering Regional Brain Structure in the Preterm Infant

Thompson D.K., Warfield S.K., Carlin J.B., Pavlovic M., Wang H.X., Bear M., Kean M.J., Doyle L.W., Egan G.F., Inder T.E.

Mar-2007

CRL, NAC, SLICER

Brain. 2007 Mar;130(Pt 3):667-77

Registered, Sensor-Integrated Virtual Reality for Surgical Applications

King B.W., Reisner L.A., Klein M.D., Auner G.W., Pandya A.K.

Mar-2007

SLICER

Proceedings of the International Conference and Exhibition in Virtual Reality 2007; 277-278.

Volumetric Assessment of Tumor Infiltration of Adjacent White Matter Based on Anatomic MRI and Diffusion Tensor Tractography

Talos I-F., Zou K.H., Kikinis R., Jolesz F.A.

Apr-2007

SPL, NAC, NCIGT, SLICER

Acad Radiol. 2007 Apr;14(4):431-6.

Longitudinal in Vivo Reproducibility of Cartilage Volume and Surface in Osteoarthritis of the Knee

Brem M.H., Pauser J., Yoshioka H., Brenning A., Stratmann J., Hennig F.F., Kikinis R., Duryea J., Winalski C.S., Lang P.

Apr-2007

SPL, NA-MIC, NAC, SLICER

Skeletal Radiol. 2007 Apr;36(4):315-20.

Non-rigid Alignment of Pre-operative MRI, fMRI, and DT-MRI With Intra-operative MRI for Enhanced Visualization and Navigation in Image-guided Neurosurgery

Archip N., Clatz O., Whalen S., Kacher D., Fedorov A., Kot A., Chrisochoides N., Jolesz F.A., Golby A.J., Black P.M., Warfield S.K.

Apr-2007

CRL, NAC, NCIGT, SLICER

Neuroimage. 2007 Apr 1;35(2):609-624.

Functional Brain Mapping and Its Applications to Neurosurgery

Tharin S., Golby A.J.

Apr-2007

SPL, NCIGT, SLICER

Neurosurgery. 2007 Apr;60(4 Suppl 2):185-201; discussion 201-2.

Multiscale 3-D Shape Representation and Segmentation Using Spherical Wavelets

Nain D., Haker S., Bobick A., Tannenbaum A.

Apr-2007

SPL, NA-MIC, NAC, NCIGT, SLICER

IEEE Trans Med Imaging. 2007 Apr;26(4):598-618.

Occipital Lobe Gray Matter Volume in Male Patients with Chronic Schizophrenia: A Quantitative MRI Study

Onitsuka T., McCarley R.W., Kuroki N., Dickey C.C., Kubicki M., Demeo S.S., Frumin M., Kikinis R., Jolesz F.A., Shenton M.E.

May-2007

PNL, NA-MIC, SLICER, SPL

Schizophr Res. 2007 May;92(1-3):197-206.

EUS with CT Improves Efficiency and Structure Identification over Conventional EUS

Vosburgh K.G., Stylopoulos N., San Jose Estepar R., Ellis R.E., Samset E., Thompson C.C.

May-2007

CIGL, SLICER

Gastrointest Endosc. 2007 May;65(6):866-70.

On Evaluating Brain Tissue Classifiers without a Ground Truth

Bouix S., Martin Fernandez M., Ungar L., Nakamura M., Koo M.S., McCarley R.W., Shenton M.E.

Jul-2007

PNL, NA-MIC, NAC, SLICER

Neuroimage. 2007 Jul 15;36(4):1207-1224.

Displacement of Brain Regions in Preterm Infants with Non-synostotic Dolichocephaly Investigated by MRI

Mewes A.U.J., Zollei L., Huppi P.S., Als H., McAnulty G.B., Inder T.E., Wells III W.M., Warfield S.K.

Jul-2007

CRL, NAC, NCIGT, SLICER

Neuroimage. 2007 Jul 15;36(4):1074-1085.

Active Mean Fields: Solving the Mean Field Approximation in the Level Set Framework

Pohl K.M., Kikinis R., Wells III W.M.

Jul-2007

SPL, NA-MIC, NAC, NCIGT, SLICER

Inf Process Med Imaging. 2007;20:26-37.

Object Naming is a More Sensitive Measure of Speech Localization than Number Counting: Converging Evidence from Direct Cortical Stimulation and FMRI

Petrovich Brennan N.M., Whalen S., de Morales Branco D., O'Shea J.P., Norton I.H., Golby A.J.

Aug-2007

NCIGT, SLICER

Neuroimage. 2007; 37( Suppl 1):S100-8.

Surface Rendering-based Virtual Intraventricular Endoscopy: Retrospective Feasibility Study and Comparison to Volume Rendering-based Approach

Nakajima N., Wada J., Miki T., Haraoka J., Hata N.

Aug-2007

SNR, NCIGT, SLICER

NeuroImage 2007; 37(Suppl 1):S89-S99.

A Detailed 3D Model of the Guinea Pig Cochlea

Liu B., Gao X.L., Yin H.X., Luo S.Q., Lu J.

Sep-2007

SLICER

Brain Struct Funct. 2007 Sep;212(2):223-30.

Challenges in Image-guided Therapy System Design

DiMaio S.P., Kapur T., Cleary K., Aylward S., Kazanzides P., Vosburgh K.G., Ellis R., Duncan J., Farahani K., Lemke H., Peters T., Lorensen W., Gobbi D., Haller J., Clarke L., Pizer S., Taylor R., Galloway Jr R., Fichtinger G., Hata N., Lawson K., Tempany C.M., Kikinis R., Jolesz F.A.

Sep-2007

NCIGT, CIGL, NA-MIC, SLICER, SNR, SPL

NeuroImage 2007; 37(Suppl 1):S144-S151.

Creating physical 3D stereolithograph models of brain and skull

Kelley D.J., Farhoud M., Meyerand M.E., Nelson D.L., Ramirez L.F., Dempsey R.J., Wolf A.J., Alexander A.L., Davidson R.J.

Oct-2007

SLICER

PLoS ONE. 2007 Oct 31;2(10):e1119.

Prior Knowledge Driven Multiscale Segmentation of Brain MRI

Akselrod-Ballin A., Galun M., Gomori J.M., Brandt A., Basri R.

Oct-2007

Miscellaneous, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2007;10(Pt 2):118-26.

Application of Open Source Image Guided Therapy Software in MR-guided Therapies

Hata N., Pieper S., Jolesz F.A., Tempany C.M., Black P.M., Morikawa S., Iseki H., Hashizume M., Kikinis R.

Oct-2007

SNR, NA-MIC, NAC, NCIGT, SLICER, SPL

Int Conf Med Image Comput Comput Assist Interv. 2007;10(Pt 1):491-8.

A White Matter Stochastic Tractography System

Ngo T.M., Westin C-F., Golland P.

Oct-2007

LMI, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2007;10(WS):94-104.

MindSeer: A Portable and Extensible Tool for Visualization of Structural and Functional Neuroimaging Data

Moore E.B., Poliakov A.V., Lincoln P., Brinkley J.F.

Oct-2007

SLICER

BMC Bioinformatics. 2007 Oct 15;8:389.

Non-rigid Registration of Pre-procedural MR Images with Intra- procedural Unenhanced CT Images for Improved Targeting of Tumors During Liver Radiofrequency Ablations

Archip N., Tatli S., Morrison P.R., Jolesz F.A., Warfield S.K., Silverman S.G.

Oct-2007

NCIGT, CRL, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2007;10(Pt 2):969-77.

The Open-source Neuroimaging Research Enterprise

Marcus D.S., Archie K.A., Olsen T.R., Ramaratnam M.

Nov-2007

SLICER

J Digit Imaging. 2007 Nov;20 Suppl 1:130-8.

3D Visualization and Simulation of Frontoorbital Advancement in Metopic Synostosis

Rodt T., Schlesinger A., Schramm A., Diensthuber M., Rittierodt M., Krauss J.K.

Nov-2007

SLICER

Childs Nerv Syst. 2007 Nov;23(11):1313-7.

Towards Scarless Surgery: An Endoscopic Ultrasound Navigation System for Transgastric Access Procedures

San Jose Estepar R., Stylopoulos N., Ellis R., Samset E., Westin C-F., Thompson C., Vosburgh K.G.

Nov-2007

LMI, CIGL, NAC, SLICER

Comput Aided Surg. 2007 Nov;12(6):311-24.

CAVASS: A Computer-assisted Visualization and Analysis Software System

Grevera G., Udupa J., Odhner D., Zhuge Y., Souza A., Iwanaga T., Mishra S.

Nov-2007

SLICER

J Digit Imaging. 2007 Nov;20 Suppl 1:101-18.

Title

Authors

2008

Collection

Reference

Using Magnetic Resonance Microscopy to Study the Growth Dynamics of a Glioma Spheroid in Collagen I: A Case Study

Huang S., Vader D., Wang Z., Stemmer-Rachamimov A., Weitz D.A., Dai G., Rosen B.R., Deisboeck T.S.

Jan-2008

SLICER

BMC Med Imaging. 2008 Jan 29;8:3.

Lowering the Barriers Inherent in Translating Advances in Neuroimage Analysis to Clinical Research Applications

Pujol S., Kikinis R., Gollub R.

Jan-2008

NA-MIC, SLICER, SPL

Acad Radiol. 2008 Jan;15(1):114-8.

MR-Guided Prostate Interventions

Tempany C.M., Straus S., Hata N., Haker S.

Feb-2008

Prostate Group, NA-MIC, NCIGT, SLICER, SNR

J Magn Reson Imaging, 2008 Feb;27(2):356-67.

3D modeling-based surgical planning in transsphenoidal pituitary surgery - preliminary results

Raappana A., Koivukangas J., Pirilä T.

Mar-2008

SLICER

Acta Otolaryngol. 2008 Mar 10:1-8.

Intrauterine Growth Restriction Affects the Preterm Infant's Hippocampus

Lodygensky G.A., Seghier M.L., Warfield S.K., Tolsa C.B., Sizonenko S., Lazeyras F., Huppi P.S.

Apr-2008

CRL, NAC, SLICER

Pediatr Res. 2008 Apr;63(4):438-43.

A Computer Modeling Tool for Comparing Novel ICD Electrode Orientations in Children and Adults

Jolley M., Stinstra J., Pieper S., Macleod R., Brooks D.H., Cecchin F., Triedman J.K.

Apr-2008

SLICER, NA-MIC, NAC

Heart Rhythm. 2008 Apr;5(4):565-572.

A Mathematical Framework for Incorporating Anatomical Knowledge in DT-MRI Analysis

Maddah M., Zollei L., Grimson W.E.L., Westin C-F., Wells III W.M.

May-2008

SPL, LMI, NA-MIC, NAC, NCIGT, SLICER

Proceedings of the 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2008; 4543943: 105–108.

iTools: A Framework for Classification, Categorization and Integration of Computational Biology Resources.

Dinov I., Rubin D., Lorensen W., Dugan J., Ma J., Murphy S., Kirschner B., Bug W., Sherman M., Floratos A., Kennedy D., Jagadish H., Schmidt J., Athey B., Califano A., Musen M., Altman R., Kikinis R., Kohane I., Delp S., Parker D., Toga A.

May-2008

NA-MIC, SLICER, SPL

PLoS ONE 2008 May; 3(5): e2265.

Image Guided Therapy in Slicer3: Introduction to Navigation using OpenIGTLink

Pace D., Tokuda J., Liu H., Hata N.

Jun-2008

NA-MIC, Download Data, NCIGT, SLICER, SNR

NCIGT-SNR Tutorial. 2008 June;

Image Guided Therapy in Slicer3: Advanced Tutorial on Navigation using OpenIGTLink

Pace D., Tokuda J., Liu H., Hata N.

Jun-2008

NA-MIC, Download Data, NCIGT, SLICER, SNR

NCIGT-SNR Tutorial. 2008 June;

Software Strategy for Robotic Transperineal Prostate Therapy in Closed-Bore MRI

Tokuda J., Fischer G.S., Csoma C., DiMaio S.P., Gobbi D.G., Fichtinger G., Tempany C.M., Hata N.

Sep-2008

NCIGT, NA-MIC, NAC, Prostate Group, SLICER, SNR

Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 2):701-709.

3D Modeling-based Surgical Planning in Transsphenoidal Pituitary Surgery - Preliminary Results

Raappana A., Koivukangas J., Pirilä T.

Sep-2008

SLICER

Acta Otolaryngol. 2008 Sep;128(9):1011-8.

A Generic Framework For Internet-based Interactive Applications of High-resolution 3-D Medical Image Data

Liu D., Hua K.A., Sugaya K.

Sep-2008

SLICER

IEEE Trans Inf Technol Biomed. 2008 Sep;12(5):618-26.

An MRI Study of Age-related White and Gray Matter Volume Changes in the Rhesus Monkey

Wisco J.J., Killiany R.J., Guttmann C.R.G., Warfield S.K., Moss M.B., Rosene D.L.

Oct-2008

CNI, CRL, NAC, SLICER

Neurobiol Aging. 2008 Oct;29(10):1563-75.

Uterine Leiomyomas: MR Imaging–guided Focused Ultrasound Surgery-Imaging Predictors of Success

Lénárd Z.M., McDannold N.J., Fennessy F.M., Stewart E.A., Jolesz F.A., Hynynen K., Tempany C.M.

Oct-2008

FUS, NCIGT, Prostate Group, SLICER

Radiology. 2008 Oct;249(1):187-94.

A Rhesus Monkey Reference Label Atlas for Template Driven Segmentation

Wisco J.J., Rosene D.L., Killiany R.J., Moss M.B., Warfield S.K., Egorova S., Wu Y., Liptak Z., Warner J., Guttmann C.R.G.

Oct-2008

CNI, NAC, SLICER

J Med Primatol. 2008 Oct;37(5):250-60.

The Relationship Between Diffusion Tensor Imaging and Volumetry as Measures of White Matter Properties

Fjell A.M., Westlye L.T., Greve D.N., Fischl B., Benner T., van der Kouwe A.J.W., Salat D., Bjørnerud A., Due-Tønnessen P., Walhovd K.B.

Oct-2008

SLICER

Neuroimage. 2008 Oct 1;42(4):1654-68.

Image Guided Therapy in Slicer3: Planning for Image Guided Neurosurgery

Pace D., Hata N.

Nov-2008

NA-MIC, Download Data, NAC, NCIGT, SLICER, SNR

NCIGT-SNR Tutorial. 2008 November;

An Integrated System For Planning, Navigation and Robotic Assistance For Skull Base Surgery

Xia T., Baird C., Jallo G., Hayes K., Nakajima N., Hata N., Kazanzides P.

Dec-2008

SLICER, NA-MIC, NAC, NCIGT, SNR, SPL

Int J Med Robot. 2008 Dec;4(4):321-30.

Title

Authors

2009

Collection

Reference

MR-guided Prostate Interventions with 3D Slicer and the NA-MIC Kit

Pace D., Oguro S., Haker S., Hata N.

Jan-2009

NA-MIC, Download Data, NAC, NCIGT, Prostate Group, SLICER, SNR

NCIGT-SNR Tutorial. 2009 January;

A Role For Self-gravity At Multiple Length Scales In The Process of Star Formation

Goodman A.A., Rosolowsky E.W., Borkin M.A., Foster J.B., Halle M., Kauffmann J., Pineda J.E.

Jan-2009

NA-MIC, SLICER, SPL

Nature. 2009 Jan 1;457(7225):63-6.

Spiny Versus Stubby: 3D Reconstruction of Human Myenteric (type I) Neurons

Lindig T.M., Kumar V., Kikinis R., Pieper S., Schrödl F., Neuhuber W.L., Brehmer A.

Jan-2009

SLICER, NA-MIC, NAC, SPL

Histochem Cell Biol. 2009 Jan;131(1):1-12.

Multimodal Imaging in Mild Cognitive Impairment: Metabolism, Morphometry and Diffusion of the Temporal-parietal Memory Network

Walhovd K.B., Fjell A.M., Amlien I., Grambaite R., Stenset V., Bjørnerud A., Reinvang I., Gjerstad L., Cappelen T., Due-Tønnessen P., Fladby T.

Mar-2009

SLICER

Neuroimage. 2009 Mar 1;45(1):215-23.

Demographic and Biological Influences on Cognitive Reserve

Kaplan R.F., Cohen R.A., Moscufo N., Guttmann C.R.G., Chasman J., Buttaro M., Hall C.H., Wolfson L.

Mar-2009

CNI, SLICER

J Clin Exp Neuropsychol. 2009 Mar 31:1-9.

In Vivo Hippocampal Measurement and Memory: A Comparison of Manual Tracing and Automated Segmentation in a Large Community-based Sample

Cherbuin N., Anstey K.J., Réglade-Meslin C., Sachdev P.S.

Apr-2009

SLICER

PLoS One. 2009;4(4):e5265.

Integration of the Vascular Modeling Toolkit in 3D Slicer

Hähn D.

Apr-2009

SLICER, SPL

Student Research Project 2009 Apr;

Origins of Intraoperative MRI

Mislow J.M.K., Golby A.J., Black P.M.

Apr-2009

NCIGT, SLICER

Neurosurg Clin N Am. 2009 Apr;20(2):137-46.

Brain Regional Lesion Burden and Impaired Mobility in the Elderly

Moscufo N., Guttmann C.R.G., Meier D., Csapo I., Hildenbrand P.G., Healy B., Schmidt J., Wolfson L.

May-2009

NAC, CNI, SLICER

Neurobiol Aging. 2009 May 8.

Clinical Application of Curvilinear Distraction Osteogenesis for Correction of Mandibular Deformities

Kaban L.B., Seldin E.B., Kikinis R., Yeshwant K., Padwa B.L., Troulis M.J.

May-2009

NAC, SLICER, SPL

J Oral Maxillofac Surg. 2009 May;67(5):996-1008.

Tumor Ablation Therapy of Liver Cancers with an Open Magnetic Resonance Imaging-based Navigation System

Maeda T., Hong J., Konishi K., Nakatsuji T., Yasunaga T., Yamashita Y., Taketomi A., Kotoh K., Enjoji M., Nakashima H., Tanoue K., Maehara Y., Hashizume M.

May-2009

SLICER, SNR

Surg Endosc. 2009 May;23(5):1048-53.

Consistent Neuroanatomical Age-related Volume Differences Across Multiple Samples

Walhovd K.B., Westlye L.T., Amlien I., Espeseth T., Reinvang I., Raz N., Agartz I., Salat D.H., Greve D.N., Fischl B., Dale A.M., Fjell A.M.

Jun-2009

SLICER

Neurobiol Aging. 2009 Jun 29.

Localization of Brain White Matter Hyperintensities and Urinary Incontinence in Community-dwelling Older Adults

Kuchel G.A., Moscufo N., Guttmann C.R.G., Zeevi N., Wakefield D., Schmidt J., Dubeau C.E., Wolfson L.

Aug-2009

CNI, SLICER

J Gerontol A Biol Sci Med Sci. 2009 Aug;64(8):902-9.

Intra-operative Multimodal Non-rigid Registration of the Liver for Navigated Tumor Ablation

Elhawary H., Oguro S., Tuncali K., Morrison P.R., Shyn P.B., Tatli S., Silverman S.G., Hata N.

Sep-2009

SNR, SLICER, SPL

Int Conf Med Image Comput Comput Assist Interv. 2009;12(Pt 1):837-844.

New Expectation Maximization Segmentation Pipeline in Slicer 3

Rannou N., Jaume S., Pieper S., Kikinis R.

Sep-2009

NA-MIC, SLICER, SPL

Insight Journal, Sep 15, 2009. pp.1-47.

Optimal Transseptal Puncture Location for Robot Assisted Left Atrial Catheter Ablation

Jayender J., Patel R., Michaud G., Hata N.

Sep-2009

SNR, SLICER, SPL

Int Conf Med Image Comput Comput Assist Interv. 2009;12(Pt 1):1-8.

An open-source real-time ultrasound reconstruction system for four-dimensional imaging of moving organs

Pace D., Gobbi D., Wedlake C., Gumprecht J., Boisvert J., Tokuda J., Hata N., Peters T.

Sep-2009

SLICER, NA-MIC, NAC, NCIGT, SNR, SPL

Int Conf Med Image Comput Comput Assist Interv. 2009;12(WS)

Increased Sensitivity to Effects of Normal Aging and Alzheimer's Disease on Cortical Thickness by Adjustment for Local Variability in Gray/White Contrast: A Multi-sample MRI Study

Westlye L.T., Walhovd K.B., Dale A.M., Espeseth T., Reinvang I., Raz N., Agartz I., Greve D.N., Fischl B., Fjell A.M.

Oct-2009

NA-MIC, SLICER

Neuroimage. 2009 Oct 1;47(4):1545-57.

MRI Signal Intensity Based B-Spline Nonrigid Registration for Pre- and Intraoperative Imaging During Prostate Brachytherapy

Oguro S., Tokuda J., Elhawary H., Haker S., Kikinis R., Tempany C.M., Hata N.

Nov-2009

SNR, NA-MIC, NAC, NCIGT, Prostate Group, SLICER, SPL

J Magn Reson Imaging. 2009 Nov;30(5):1052-8.

Title

Authors

2010

Collection

Reference

Perk Station-Percutaneous Surgery Training and Performance Measurement Platform

Vikal S., U-Thainual P., Carrino J.A., Iordachita I., Fischer G.S., Fichtinger G.

Jan-2010

SLICER, NA-MIC

Comput Med Imaging Graph. 2010 Jan;34(1):19-32.

Integrated Navigation and Control Software System for MRI-guided Robotic Prostate Interventions

Tokuda J., Fischer G.S., DiMaio S.P., Gobbi D.G., Csoma C., Mewes P.W., Fichtinger G., Tempany C.M., Hata N.

Jan-2010

NCIGT, NA-MIC, NAC, SLICER, SNR

Comput Med Imaging Graph. 2010 Jan;34(1):3-8.

Visualization of Image Data from Cells to Organisms

Walter T., Shattuck D.W., Baldock R., Bastin M.E., Carpenter A.E., Duce S., Ellenberg J., Fraser A., Hamilton N., Pieper S., Ragan M.A., Schneider J.E., Tomancak P., Hériché J-K.

Mar-2010

NA-MIC, NAC, SLICER

Nature Methods Supplement 2010 March; 7(3):S27-S41.

Open Core Control Software for Surgical Robots

Arata J., Kozuka H., Kim H.W., Takesue N., Vladimirov B., Sakaguchi M., Tokuda J., Hata N., Chinzei K., Fujimoto H.

May-2010

NCIGT, NA-MIC, SLICER, SNR

Int J Comput Assist Radiol Surg. 2010 May;5(3):211-20.

JHU-MNI-ss Atlas

Oishi K., Faria A.V., Mori S.

May-2010

Download Data, SLICER

JHU White Matter Atlas 2010 May;

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