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Title

Authors

2009

Collection

Reference

MRI signal intensity based B-Spline nonrigid registration for pre- and intraoperative imaging during prostate brachytherapy

Oguro S., Tokuda J., Elhawary H., Haker S., Kikinis R., Tempany C.M.C., Hata N.

Nov-2009

SNR, NA-MIC, NAC, NCIGT, Prostate Group, SLICER, SPL

J Magn Reson Imaging. 2009 Nov;30(5):1052-8.

Increased sensitivity to effects of normal aging and Alzheimer's disease on cortical thickness by adjustment for local variability in gray/white contrast: a multi-sample MRI study

Westlye L.T., Walhovd K.B., Dale A.M., Espeseth T., Reinvang I., Raz N., Agartz I., Greve D.N., Fischl B., Fjell A.M.

Oct-2009

NA-MIC, SLICER

Neuroimage. 2009 Oct 1;47(4):1545-57.

New Expectation Maximization Segmentation Pipeline in Slicer 3

Rannou N., Jaume S., Pieper S., Kikinis R.

Sep-2009

NA-MIC, SLICER, SPL

Insight Journal, Sep 15, 2009. pp.1-47.

Intra-operative Multimodal Non-rigid Registration of the Liver for Navigated Tumor Ablation

Elhawary H., Oguro S., Tuncali K., Morrison P.R., Shyn P.B., Tatli S., Silverman S.G., Hata N.

Sep-2009

SNR, SLICER, SPL

Int Conf Med Image Comput Comput Assist Interv. 2009;12(Pt 1):837-844.

Optimal Transseptal Puncture Location for Robot Assisted Left Atrial Catheter Ablation

Jayender J., Patel R., Michaud G., Hata N.

Sep-2009

SNR, SLICER, SPL

Int Conf Med Image Comput Comput Assist Interv. 2009;12(Pt 1):1-8.

Localization of brain white matter hyperintensities and urinary incontinence in community-dwelling older adults

Kuchel G.A., Moscufo N., Guttmann C.R., Zeevi N., Wakefield D., Schmidt J., Dubeau C.E., Wolfson L.

Aug-2009

CNI, SLICER

J Gerontol A Biol Sci Med Sci. 2009 Aug;64(8):902-9.

Perk Station-Percutaneous surgery training and performance measurement platform

Vikal S., U-Thainual P., Carrino J.A., Iordachita I., Fischer G.S., Fichtinger G.

Jun-2009

SLICER, NA-MIC

Comput Med Imaging Graph. 2009 Jun 16.

Consistent neuroanatomical age-related volume differences across multiple samples

Walhovd K.B., Westlye L.T., Amlien I., Espeseth T., Reinvang I., Raz N., Agartz I., Salat D.H., Greve D.N., Fischl B., Dale A.M., Fjell A.M.

Jun-2009

SLICER

Neurobiol Aging. 2009 Jun 29.

Tumor ablation therapy of liver cancers with an open magnetic resonance imaging-based navigation system

Maeda T., Hong J., Konishi K., Nakatsuji T., Yasunaga T., Yamashita Y., Taketomi A., Kotoh K., Enjoji M., Nakashima H., Tanoue K., Maehara Y., Hashizume M.

May-2009

SLICER, SNR

Surg Endosc. 2009 May;23(5):1048-53.

Clinical application of curvilinear distraction osteogenesis for correction of mandibular deformities

Kaban L.B., Seldin E.B., Kikinis R., Yeshwant K., Padwa B.L., Troulis M.J.

May-2009

NAC, SLICER, SPL

J Oral Maxillofac Surg. 2009 May;67(5):996-1008.

Brain Regional Lesion Burden and Impaired Mobility in the Elderly

Moscufo N., Guttmann C.R.G., Meier D., Csapo I., Hildenbrand P.G., Healy B., Schmidt J., Wolfson L.

May-2009

NAC, CNI, SLICER

Neurobiol Aging. 2009 May 8.

In vivo hippocampal measurement and memory: a comparison of manual tracing and automated segmentation in a large community-based sample

Cherbuin N., Anstey K.J., Réglade-Meslin C., Sachdev P.S.

Apr-2009

SLICER

PLoS One. 2009;4(4):e5265.

Integration of the Vascular Modeling Toolkit in 3D Slicer

Hähn D.

Apr-2009

SLICER, SPL

Student Research Project 2009 Apr;

Demographic and biological influences on cognitive reserve

Kaplan R.F., Cohen R.A., Moscufo N., Guttmann C., Chasman J., Buttaro M., Hall C.H., Wolfson L.

Mar-2009

CNI, SLICER

J Clin Exp Neuropsychol. 2009 Mar 31:1-9.

Multimodal imaging in mild cognitive impairment: Metabolism, morphometry and diffusion of the temporal-parietal memory network

Walhovd K.B., Fjell A.M., Amlien I., Grambaite R., Stenset V., Bjørnerud A., Reinvang I., Gjerstad L., Cappelen T., Due-Tønnessen P., Fladby T.

Mar-2009

SLICER

Neuroimage. 2009 Mar 1;45(1):215-23.

Spiny versus stubby: 3D reconstruction of human myenteric (type I) neurons

Lindig T.M., Kumar V., Kikinis R., Pieper S., Schrödl F., Neuhuber W.L., Brehmer A.

Jan-2009

SLICER, NA-MIC, NAC, SPL

Histochem Cell Biol. 2009 Jan;131(1):1-12.

A role for self-gravity at multiple length scales in the process of star formation

Goodman A.A., Rosolowsky E.W., Borkin M.A., Foster J.B., Halle M., Kauffmann J., Pineda J.E.

Jan-2009

NA-MIC, SLICER, SPL

Nature. 2009 Jan 1;457(7225):63-6.

MR-guided prostate interventions with 3D Slicer and the NA-MIC Kit

Pace D., Oguro S., Haker S., Hata N.

Jan-2009

NA-MIC, Download Data, NAC, NCIGT, Prostate Group, SLICER, SNR

NCIGT-SNR Tutorial. 2009 January;

Title

Authors

2008

Collection

Reference

An integrated system for planning, navigation and robotic assistance for skull base surgery

Xia T., Baird C., Jallo G., Hayes K., Nakajima N., Hata N., Kazanzides P.

Dec-2008

SLICER, NA-MIC, NAC, NCIGT, SNR, SPL

Int J Med Robot. 2008 Dec;4(4):321-30.

Image Guided Therapy in Slicer3: Planning for Image Guided Neurosurgery

Pace D., Hata N.

Nov-2008

NA-MIC, Download Data, NAC, NCIGT, SLICER, SNR

NCIGT-SNR Tutorial. 2008 November;

The relationship between diffusion tensor imaging and volumetry as measures of white matter properties

Fjell A.M., Westlye L.T., Greve D.N., Fischl B., Benner T., van der Kouwe A.J.W., Salat D., Bjørnerud A., Due-Tønnessen P., Walhovd K.B.

Oct-2008

SLICER

Neuroimage. 2008 Oct 1;42(4):1654-68.

A rhesus monkey reference label atlas for template driven segmentation

Wisco J.J., Rosene D.L., Killiany R.J., Moss M.B., Warfield S.K., Egorova S., Wu Y., Liptak Z., Warner J., Guttmann C.R.G.

Oct-2008

CNI, NAC, SLICER

J Med Primatol. 2008 Oct;37(5):250-60.

Uterine Leiomyomas: MR Imaging–guided Focused Ultrasound Surgery-Imaging Predictors of Success

Lénárd Z.M., McDannold N.J., Fennessy F.M., Stewart E.A., Jolesz F.A., Hynynen K., Tempany C.M.

Oct-2008

FUS, NCIGT, Prostate Group, SLICER

Radiology. 2008 Oct;249(1):187-94.

An MRI study of age-related white and gray matter volume changes in the rhesus monkey

Wisco J.J., Killiany R.J., Guttmann C.R.G., Warfield S.K., Moss M.B., Rosene D.L.

Oct-2008

CNI, CRL, NAC, SLICER

Neurobiol Aging. 2008 Oct;29(10):1563-75.

Software Strategy for Robotic Transperineal Prostate Therapy in Closed-Bore MRI

Tokuda J., Fischer G.S., Csoma C., DiMaio S.P., Gobbi D.G., Fichtinger G., Tempany C.M., Hata N.

Sep-2008

NCIGT, NA-MIC, NAC, Prostate Group, SLICER, SNR

Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 2):701-709.

A generic framework for internet-based interactive applications of high-resolution 3-D medical image data

Liu D., Hua K.A., Sugaya K.

Sep-2008

SLICER

IEEE Trans Inf Technol Biomed. 2008 Sep;12(5):618-26.

3D modeling-based surgical planning in transsphenoidal pituitary surgery - preliminary results

Raappana A., Koivukangas J., Pirilä T.

Sep-2008

SLICER

Acta Otolaryngol. 2008 Sep;128(9):1011-8.

Image Guided Therapy in Slicer3: Introduction to Navigation using OpenIGTLink

Pace D., Tokuda J., Liu H., Hata N.

Jun-2008

NA-MIC, Download Data, NCIGT, SLICER, SNR

NCIGT-SNR Tutorial. 2008 June;

Image Guided Therapy in Slicer3: Advanced Tutorial on Navigation using OpenIGTLink

Pace D., Tokuda J., Liu H., Hata N.

Jun-2008

NA-MIC, Download Data, NCIGT, SLICER, SNR

NCIGT-SNR Tutorial. 2008 June;

A Mathematical Framework for Incorporating Anatomical Knowledge in DT-MRI Analysis

Maddah M., Zollei L., Grimson W.E.L., Westin C-F., Wells III W.M.

May-2008

SPL, LMI, NA-MIC, NAC, NCIGT, SLICER

Proceedings of the 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2008; 4543943: 105–108.

iTools: A Framework for Classification, Categorization and Integration of Computational Biology Resources.

Dinov I., Rubin D., Lorensen W., Dugan J., Ma J., Murphy S., Kirschner B., Bug W., Sherman M., Floratos A., Kennedy D., Jagadish H., Schmidt J., Athey B., Califano A., Musen M., Altman R., Kikinis R., Kohane I., Delp S., Parker D., Toga A.

May-2008

NA-MIC, SLICER, SPL

PLoS ONE 2008 May; 3(5): e2265.

Intrauterine growth restriction affects the preterm infant's hippocampus

Lodygensky G.A., Seghier M.L., Warfield S.K., Tolsa C.B., Sizonenko S., Lazeyras F., Huppi P.S.

Apr-2008

CRL, NAC, SLICER

Pediatr Res. 2008 Apr;63(4):438-43.

A Computer Modeling Tool for Comparing Novel ICD Electrode Orientations in Children and Adults

Jolley M., Stinstra J., Pieper S., Macleod R., Brooks D.H., Cecchin F., Triedman J.K.

Apr-2008

SLICER, NA-MIC, NAC

Heart Rhythm. 2008 Apr;5(4):565-572.

3D modeling-based surgical planning in transsphenoidal pituitary surgery - preliminary results

Raappana A., Koivukangas J., Pirilä T.

Mar-2008

SLICER

Acta Otolaryngol. 2008 Mar 10:1-8.

MR-Guided Prostate Interventions

Tempany C.M., Straus S., Hata N., Haker S.

Feb-2008

Prostate Group, NA-MIC, NCIGT, SLICER, SNR

J Magn Reson Imaging, 2008 Feb;27(2):356-67.

Lowering the barriers inherent in translating advances in neuroimage analysis to clinical research applications

Pujol S., Kikinis R., Gollub R.

Jan-2008

NA-MIC, SLICER, SPL

Acad Radiol. 2008 Jan;15(1):114-8.

Using magnetic resonance microscopy to study the growth dynamics of a glioma spheroid in collagen I: A case study

Huang S., Vader D., Wang Z., Stemmer-Rachamimov A., Weitz D.A., Dai G., Rosen B.R., Deisboeck T.S.

Jan-2008

SLICER

BMC Med Imaging. 2008 Jan 29;8:3.

Title

Authors

2007

Collection

Reference

Towards scarless surgery: An endoscopic ultrasound navigation system for transgastric access procedures

San Jose Estepar R., Stylopoulos N., Ellis R., Samset E., Westin C-F., Thompson C., Vosburgh K.

Nov-2007

LMI, CIGL, NAC, SLICER

Comput Aided Surg. 2007 Nov;12(6):311-24.

3D visualization and simulation of frontoorbital advancement in metopic synostosis

Rodt T., Schlesinger A., Schramm A., Diensthuber M., Rittierodt M., Krauss J.K.

Nov-2007

SLICER

Childs Nerv Syst. 2007 Nov;23(11):1313-7.

CAVASS: a computer-assisted visualization and analysis software system

Grevera G., Udupa J., Odhner D., Zhuge Y., Souza A., Iwanaga T., Mishra S.

Nov-2007

SLICER

J Digit Imaging. 2007 Nov;20 Suppl 1:101-18.

The open-source neuroimaging research enterprise

Marcus D.S., Archie K.A., Olsen T.R., Ramaratnam M.

Nov-2007

SLICER

J Digit Imaging. 2007 Nov;20 Suppl 1:130-8.

Application of Open Source Image Guided Therapy Software in MR-guided Therapies

Hata N., Pieper S., Jolesz F.A., Tempany C.M., Black P.M., Morikawa S., Iseki H., Hashizume M., Kikinis R.

Oct-2007

SNR, NA-MIC, NAC, NCIGT, SLICER, SPL

Int Conf Med Image Comput Comput Assist Interv. 2007;10(Pt 1):491-8.

A White Matter Stochastic Tractography System

Ngo T.M., Westin C-F., Golland P.

Oct-2007

LMI, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2007;10(WS):94-104.

Creating physical 3D stereolithograph models of brain and skull

Kelley D.J., Farhoud M., Meyerand M.E., Nelson D.L., Ramirez L.F., Dempsey R.J., Wolf A.J., Alexander A.L., Davidson R.J.

Oct-2007

SLICER

PLoS ONE. 2007 Oct 31;2(10):e1119.

Prior Knowledge Driven Multiscale Segmentation of Brain MRI

Akselrod-Ballin A., Galun M., Gomori J.M., Brandt A., Basri R.

Oct-2007

Miscellaneous, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2007;10(Pt 2):118-26.

Non-rigid registration of pre-procedural MR images with intra- procedural unenhanced CT images for improved targeting of tumors during liver radiofrequency ablations

Archip N., Tatli S., Morrison P.R., Jolesz F.A., Warfield S.K., Silverman S.G.

Oct-2007

NCIGT, CRL, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2007;10(Pt 2):969-77.

MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data

Moore E.B., Poliakov A.V., Lincoln P., Brinkley J.F.

Oct-2007

SLICER

BMC Bioinformatics. 2007 Oct 15;8:389.

A detailed 3D model of the guinea pig cochlea

Liu B., Gao X.L., Yin H.X., Luo S.Q., Lu J.

Sep-2007

SLICER

Brain Struct Funct. 2007 Sep;212(2):223-30.

Challenges in image-guided therapy system design

DiMaio S.P., Kapur T., Cleary K., Aylward S., Kazanzides P., Vosburgh K., Ellis R., Duncan J., Farahani K., Lemke H., Peters T., Lorensen W., Gobbi D., Haller J., Clarke L., Pizer S., Taylor R., Galloway Jr R., Fichtinger G., Hata N., Lawson K., Tempany C.M., Kikinis R., Jolesz F.A.

Sep-2007

NCIGT, CIGL, NA-MIC, SLICER, SNR, SPL

NeuroImage 2007; 37(Suppl 1):S144-S151.

Object naming is a more sensitive measure of speech localization than number counting: Converging evidence from direct cortical stimulation and fMRI

Petrovich Brennan N.M., Whalen S., de Morales Branco D., O'Shea J.P., Norton I.H., Golby A.J.

Aug-2007

SPL, SLICER, NCIGT

Neuroimage. 2007;37 Suppl 1:S100-8.

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